>SRP54_ENTHI (O15821) Signal recognition particle 54 kDa protein (SRP54)|
          Length = 487

 Score = 30.8 bits (68), Expect = 0.85
 Identities = 19/73 (26%), Positives = 32/73 (43%)
 Frame = +1

Query: 82  LLKMARREGXXXXXXXXXXXXYYRHRGRNPSTVGSWHATTAASLDDDGLNQQAPLRSQRC 261
           +L M   +G            YY++RG  P+ VG       A     G  +Q  + ++R 
Sbjct: 103 VLMMVGLQGAGKTTTITKLALYYKNRGYKPAVVG-------ADTFRAGAYEQLQMNAKRA 155

Query: 262 GIPYWSKGSKQRS 300
           G+P++  G K+ S
Sbjct: 156 GVPFF--GIKEES 166

>ZN646_HUMAN (O15015) Zinc finger protein 646|
          Length = 1829

 Score = 29.6 bits (65), Expect = 1.9
 Identities = 14/36 (38%), Positives = 18/36 (50%)
 Frame = +1

Query: 181 GSWHATTAASLDDDGLNQQAPLRSQRCGIPYWSKGS 288
           GS   +T+  L+D GL +  P R   CG  Y   GS
Sbjct: 353 GSAELSTSGELEDSGLEEYRPFRCGDCGRTYRHAGS 388

>TYRP1_CHICK (O57405) 5,6-dihydroxyindole-2-carboxylic acid oxidase precursor|
           (EC 1.14.18.-) (DHICA oxidase) (Tyrosinase-related
           protein 1) (TRP-1) (TRP1)
          Length = 535

 Score = 28.5 bits (62), Expect = 4.2
 Identities = 18/65 (27%), Positives = 29/65 (44%)
 Frame = +1

Query: 148 YRHRGRNPSTVGSWHATTAASLDDDGLNQQAPLRSQRCGIPYWSKGSKQRSCSPSLSDTL 327
           + H G  P+ V +WH      L+ D  N    L+    G+PYW+  + Q +C     D +
Sbjct: 212 FSHEG--PAFV-TWHRYHLLQLERDMQNM---LQDSTFGLPYWNFATGQNTCDICSDDLM 265

Query: 328 RRRGS 342
             R +
Sbjct: 266 GARSN 270

>Y047_MYCPN (P75067) Hypothetical protein MG037 homolog (D09_orf451)|
          Length = 451

 Score = 28.1 bits (61), Expect = 5.5
 Identities = 20/54 (37%), Positives = 25/54 (46%)
 Frame = +2

Query: 11  ATFLDQHHRCLLLLDVSAHQIPLSC*KWQEEKDLPFLALRSPLALITGTEAGIP 172
           A FL QHH+  L L V  HQ                LA R+PL  ITG++  +P
Sbjct: 112 ANFLKQHHQ--LPLTVKIHQSSEG------------LAFRTPLVTITGSDQMVP 151

>TIM8A_FUGRU (Q90YI5) Mitochondrial import inner membrane translocase subunit|
           Tim8 A
          Length = 90

 Score = 27.7 bits (60), Expect = 7.2
 Identities = 9/16 (56%), Positives = 11/16 (68%)
 Frame = -3

Query: 205 QQLLHAMNRRCWDSCL 158
           QQL+H M   CWD C+
Sbjct: 26  QQLVHHMTEVCWDKCM 41

>GAT1_YEAST (P43574) Transcriptional regulatory protein GAT1|
          Length = 510

 Score = 27.7 bits (60), Expect = 7.2
 Identities = 21/58 (36%), Positives = 28/58 (48%), Gaps = 3/58 (5%)
 Frame = +1

Query: 166 NPSTVG---SWHATTAASLDDDGLNQQAPLRSQRCGIPYWSKGSKQRSCSPSLSDTLR 330
           NP   G   ++ A+ AAS   + LN  APL+SQ   IP        +  SPS+   LR
Sbjct: 377 NPGAAGKKKNYTASVAASKRKNSLNIVAPLKSQDIPIP--------KIASPSIPQYLR 426

>ATG4_CANGA (Q6FP20) Probable cysteine protease ATG4 (EC 3.4.22.-)|
           (Autophagy-related protein 4)
          Length = 483

 Score = 27.3 bits (59), Expect = 9.4
 Identities = 14/30 (46%), Positives = 19/30 (63%)
 Frame = -2

Query: 116 KEDPSLLAIFNSLEGFDELRHPEAANSGDV 27
           +E  SLL I N L+G D+ R P+  NS D+
Sbjct: 363 QEFTSLLTIVNVLDGMDQYRDPD-LNSNDI 391

>Y575_WOLSU (Q7M9Z1) UPF0323 lipoprotein WS0575 precursor|
          Length = 217

 Score = 27.3 bits (59), Expect = 9.4
 Identities = 15/26 (57%), Positives = 18/26 (69%), Gaps = 1/26 (3%)
 Frame = +1

Query: 4   KGGYFSRSTSPLFA-ASGCLSSSNPS 78
           KGGYF  S+SP  A +S   SSS+PS
Sbjct: 189 KGGYFGSSSSPSSAPSSSSSSSSSPS 214

>MMP11_HUMAN (P24347) Stromelysin-3 precursor (EC 3.4.24.-) (ST3) (SL-3) (Matrix|
           metalloproteinase-11) (MMP-11)
          Length = 488

 Score = 27.3 bits (59), Expect = 9.4
 Identities = 16/43 (37%), Positives = 20/43 (46%), Gaps = 5/43 (11%)
 Frame = +1

Query: 187 WHATTAASLDDDGLNQQAP-----LRSQRCGIPYWSKGSKQRS 300
           WHA   +S       Q+AP     LR  RCG+P  S G   R+
Sbjct: 51  WHAALPSSPAPAPATQEAPRPASSLRPPRCGVPDPSDGLSARN 93


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.315    0.128    0.398 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 49,323,078
Number of Sequences: 219361
Number of extensions: 910803
Number of successful extensions: 2507
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 2459
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2507
length of database: 80,573,946
effective HSP length: 94
effective length of database: 59,954,012
effective search space used: 1438896288
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)