ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name bastl33b03
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1NOMO2_HUMAN (Q5JPE7) Nodal modulator 2 precursor (pM5 protein 2) 95 8e-20
2NOMO3_HUMAN (P69849) Nodal modulator 3 precursor (pM5 protein 3) 95 8e-20
3NOMO1_HUMAN (Q15155) Nodal modulator 1 precursor (pM5) 95 8e-20
4RL7_DICDI (P11874) 60S ribosomal protein L7 30 4.0
5TNR17_MOUSE (O88472) Tumor necrosis factor receptor superfamily ... 30 4.0
6SPI3_VARV (P33831) Serine proteinase inhibitor 3 29 5.2

>NOMO2_HUMAN (Q5JPE7) Nodal modulator 2 precursor (pM5 protein 2)|
          Length = 1267

 Score = 95.1 bits (235), Expect = 8e-20
 Identities = 49/112 (43%), Positives = 70/112 (62%), Gaps = 3/112 (2%)
 Frame = +1

Query: 109 DEIDGCGGFVEASSGLAKPRRASESKFDYSDITVELCTVDGLVKESTQCAPN-GYYFIPV 285
           D + GCGGFV+           S+ + +YS I ++L T  G +K  T CAPN GY+ IP+
Sbjct: 34  DIVVGCGGFVK-----------SDVEINYSLIEIKLYTKHGTLKYQTDCAPNNGYFMIPL 82

Query: 286 YDKGSFVVRVKGPKGWSWKPETVPAVID--QNGCNGNADINFQFTGFTVSGK 435
           YDKG F+++++ P GWS++P TV   +D   + C    DINF FTGF+V+GK
Sbjct: 83  YDKGDFILKIEPPLGWSFEPTTVELHVDGVSDICTKGGDINFVFTGFSVNGK 134



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>NOMO3_HUMAN (P69849) Nodal modulator 3 precursor (pM5 protein 3)|
          Length = 1222

 Score = 95.1 bits (235), Expect = 8e-20
 Identities = 49/112 (43%), Positives = 70/112 (62%), Gaps = 3/112 (2%)
 Frame = +1

Query: 109 DEIDGCGGFVEASSGLAKPRRASESKFDYSDITVELCTVDGLVKESTQCAPN-GYYFIPV 285
           D + GCGGFV+           S+ + +YS I ++L T  G +K  T CAPN GY+ IP+
Sbjct: 34  DIVVGCGGFVK-----------SDVEINYSLIEIKLYTKHGTLKYQTDCAPNNGYFMIPL 82

Query: 286 YDKGSFVVRVKGPKGWSWKPETVPAVID--QNGCNGNADINFQFTGFTVSGK 435
           YDKG F+++++ P GWS++P TV   +D   + C    DINF FTGF+V+GK
Sbjct: 83  YDKGDFILKIEPPLGWSFEPTTVELHVDGVSDICTKGGDINFVFTGFSVNGK 134



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>NOMO1_HUMAN (Q15155) Nodal modulator 1 precursor (pM5)|
          Length = 1222

 Score = 95.1 bits (235), Expect = 8e-20
 Identities = 49/112 (43%), Positives = 70/112 (62%), Gaps = 3/112 (2%)
 Frame = +1

Query: 109 DEIDGCGGFVEASSGLAKPRRASESKFDYSDITVELCTVDGLVKESTQCAPN-GYYFIPV 285
           D + GCGGFV+           S+ + +YS I ++L T  G +K  T CAPN GY+ IP+
Sbjct: 34  DIVVGCGGFVK-----------SDVEINYSLIEIKLYTKHGTLKYQTDCAPNNGYFMIPL 82

Query: 286 YDKGSFVVRVKGPKGWSWKPETVPAVID--QNGCNGNADINFQFTGFTVSGK 435
           YDKG F+++++ P GWS++P TV   +D   + C    DINF FTGF+V+GK
Sbjct: 83  YDKGDFILKIEPPLGWSFEPTTVELHVDGVSDICTKGGDINFVFTGFSVNGK 134



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>RL7_DICDI (P11874) 60S ribosomal protein L7|
          Length = 245

 Score = 29.6 bits (65), Expect = 4.0
 Identities = 18/63 (28%), Positives = 31/63 (49%)
 Frame = +1

Query: 166 RRASESKFDYSDITVELCTVDGLVKESTQCAPNGYYFIPVYDKGSFVVRVKGPKGWSWKP 345
           +RA +   +Y     E   ++ + K S      G +++P   K +FV+R++G  G S KP
Sbjct: 49  KRAEKYVSEYHKTEREAIRLNRIAKNS------GTFYVPPAAKVAFVIRIRGINGVSPKP 102

Query: 346 ETV 354
             V
Sbjct: 103 RKV 105



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>TNR17_MOUSE (O88472) Tumor necrosis factor receptor superfamily member 17|
           (B-cell maturation protein)
          Length = 185

 Score = 29.6 bits (65), Expect = 4.0
 Identities = 22/88 (25%), Positives = 41/88 (46%), Gaps = 3/88 (3%)
 Frame = +1

Query: 112 EIDGCGGFVEASSGLAKPRRASESKFDYS-DITVELCTVDGLVKESTQCAPNGYYFIPVY 288
           ++DG     +A + L + R   +  F  S + TVE CT +  VK   +   + ++ +P  
Sbjct: 89  QLDGSAQLDKADTELTRIRAGDDRIFPRSLEYTVEECTCEDCVKSKPKGDSDHFFPLPAM 148

Query: 289 DKGS--FVVRVKGPKGWSWKPETVPAVI 366
           ++G+   V    G  G S  P  + +V+
Sbjct: 149 EEGATILVTTKTGDYGKSSVPTALQSVM 176



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>SPI3_VARV (P33831) Serine proteinase inhibitor 3|
          Length = 373

 Score = 29.3 bits (64), Expect = 5.2
 Identities = 19/54 (35%), Positives = 27/54 (50%)
 Frame = +1

Query: 112 EIDGCGGFVEASSGLAKPRRASESKFDYSDITVELCTVDGLVKESTQCAPNGYY 273
           +ID    F E  SGLAKP+    SK+ Y+D+T +         ++T C    YY
Sbjct: 75  KIDLGPAFTELISGLAKPK---TSKYTYTDLTYQSFV------DNTVCIKPSYY 119


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 57,631,105
Number of Sequences: 219361
Number of extensions: 1023528
Number of successful extensions: 2551
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 2472
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2542
length of database: 80,573,946
effective HSP length: 102
effective length of database: 58,199,124
effective search space used: 3026354448
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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