ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name bastl33b02
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1LOX21_HORVU (P93184) Lipoxygenase 2.1, chloroplast precursor (EC... 155 6e-38
2LOX22_HORVU (Q8GSM3) Lipoxygenase 2.2, chloroplast precursor (EC... 55 6e-08
3SYH_PROMM (Q7V4P3) Histidyl-tRNA synthetase (EC 6.1.1.21) (Histi... 30 3.5
4SFR16_MOUSE (Q8CFC7) Splicing factor, arginine/serine-rich 16 (S... 30 3.5
5ACSA2_PSEPK (Q88DW6) Acetyl-coenzyme A synthetase 2 (EC 6.2.1.1)... 29 6.0

>LOX21_HORVU (P93184) Lipoxygenase 2.1, chloroplast precursor (EC 1.13.11.12)|
           (LOX-100) (LOX2:Hv:1)
          Length = 936

 Score =  155 bits (391), Expect = 6e-38
 Identities = 78/102 (76%), Positives = 78/102 (76%)
 Frame = +3

Query: 141 MLTVTKPLVGGACXXXXXXXXXXTFVVPEARRKPGNGRRTSVSKVGXXXXXXXXXXXXXL 320
           MLT TKPLVGGAC          TFVVPEARRKPGNGRRTSVSKVG             L
Sbjct: 1   MLTATKPLVGGACAAPSSSARRRTFVVPEARRKPGNGRRTSVSKVGSTSTSTTTTTTTTL 60

Query: 321 SADSNGAAVGTVTRPDVHVQDRTHATEMKATVTVHMSKAAGV 446
           SADSNGAAVGTVTRPDVHVQDRTHATEMKATVTVHMSKAAGV
Sbjct: 61  SADSNGAAVGTVTRPDVHVQDRTHATEMKATVTVHMSKAAGV 102



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>LOX22_HORVU (Q8GSM3) Lipoxygenase 2.2, chloroplast precursor (EC 1.13.11.12)|
           (LOX2:Hv:2)
          Length = 932

 Score = 55.5 bits (132), Expect = 6e-08
 Identities = 39/97 (40%), Positives = 45/97 (46%), Gaps = 1/97 (1%)
 Frame = +3

Query: 141 MLTVTKPLVGGACXXXXXXXXXXTFVVPEARRKPG-NGRRTSVSKVGXXXXXXXXXXXXX 317
           M T TKPLVG             +F+V EARRKP  N RRT V                 
Sbjct: 1   MQTATKPLVGARAVPLSRRA---SFLVAEARRKPSTNARRTRVGSTSTTTTTTT------ 51

Query: 318 LSADSNGAAVGTVTRPDVHVQDRTHATEMKATVTVHM 428
           +  D NG A+ TV +P  H  D     EMKATV+VHM
Sbjct: 52  ILTDVNGPALTTVAKPG-HQYDLKQTVEMKATVSVHM 87



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>SYH_PROMM (Q7V4P3) Histidyl-tRNA synthetase (EC 6.1.1.21) (Histidine--tRNA|
           ligase) (HisRS)
          Length = 436

 Score = 29.6 bits (65), Expect = 3.5
 Identities = 14/43 (32%), Positives = 23/43 (53%)
 Frame = +3

Query: 318 LSADSNGAAVGTVTRPDVHVQDRTHATEMKATVTVHMSKAAGV 446
           ++   + A +   TRPD++V +R    E  A V  H  +AAG+
Sbjct: 320 INPSGSAARLRASTRPDLYVVNRGEQAERVALVIAHQLRAAGL 362



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>SFR16_MOUSE (Q8CFC7) Splicing factor, arginine/serine-rich 16 (Suppressor of|
           white-apricot homolog 2) (Clk4-associating SR-related
           protein)
          Length = 653

 Score = 29.6 bits (65), Expect = 3.5
 Identities = 22/66 (33%), Positives = 27/66 (40%)
 Frame = -1

Query: 225 RAPRTSSAGPTTTARHTRPRLAAWSQSASWVRYGVGYCATRWGGRLHRLGWFRPS*TVQP 46
           R+   S  G   + RH R R  +WS+S S  R    Y  +R  GR H  G  R       
Sbjct: 378 RSSSRSRRGYYRSGRHARSRSRSWSRSRSRSR---RYSRSRSRGRRHSDGGSRDGHRYSR 434

Query: 45  CPGRSG 28
            P R G
Sbjct: 435 SPARRG 440



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>ACSA2_PSEPK (Q88DW6) Acetyl-coenzyme A synthetase 2 (EC 6.2.1.1) (Acetate--CoA|
           ligase 2) (Acyl-activating enzyme 2)
          Length = 644

 Score = 28.9 bits (63), Expect = 6.0
 Identities = 20/64 (31%), Positives = 28/64 (43%), Gaps = 8/64 (12%)
 Frame = -1

Query: 171 PRLAAWSQSASWV--------RYGVGYCATRWGGRLHRLGWFRPS*TVQPCPGRSGKEEV 16
           P+  A SQSA+          R  V    T W  +  RL W +P  +VQ C   +GK   
Sbjct: 8   PQALAVSQSAALTPEDYRRLYRQSVEDPDTFWAEQAKRLDWIKPWSSVQQCDLHTGKARW 67

Query: 15  MEGS 4
            +G+
Sbjct: 68  FDGA 71


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 53,141,587
Number of Sequences: 219361
Number of extensions: 953355
Number of successful extensions: 2760
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 2707
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2759
length of database: 80,573,946
effective HSP length: 102
effective length of database: 58,199,124
effective search space used: 2677159704
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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