ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
Japanese | English
更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name bastl33a12
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1ref|NM_197633.1| Oryza sativa (japonica cultivar-group) hypothet... 115 1e-22
2gb|AC020666.8| Oryza sativa chromosome 10 BAC OSJNBa0082M15 geno... 115 1e-22
3dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic D... 115 1e-22
4dbj|AK103617.1| Oryza sativa (japonica cultivar-group) cDNA clon... 115 1e-22
5gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome... 115 1e-22
6gb|AC136525.2| Oryza sativa (japonica cultivar-group) chromosome... 60 6e-06
7gb|AC145476.2| Oryza sativa (japonica cultivar-group) chromosome... 60 6e-06
8dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic D... 60 6e-06
9ref|XM_464380.1| Oryza sativa (japonica cultivar-group), mRNA 44 0.35
10dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic D... 44 0.35
11dbj|AP004000.3| Oryza sativa (japonica cultivar-group) genomic D... 44 0.35
12dbj|AP003990.3| Oryza sativa (japonica cultivar-group) genomic D... 44 0.35
13dbj|BA000040.2| Bradyrhizobium japonicum USDA 110 DNA, complete ... 44 0.35
14gb|U64032.1|OCU64032 Oryctolagus cuniculus alpha 1d adrenoceptor... 44 0.35
15gb|CP000301.1| Rhodopseudomonas palustris BisB18, complete genome 42 1.4
16gb|CP000250.1| Rhodopseudomonas palustris HaA2, complete genome 42 1.4
17gb|AE004900.1| Pseudomonas aeruginosa PAO1, section 461 of 529 o... 42 1.4
18gb|CP000031.1| Silicibacter pomeroyi DSS-3, complete genome 40 5.5
19gb|BC042060.1| Homo sapiens olfactory receptor, family 7, subfam... 40 5.5
20ref|NM_001031182.1| Gallus gallus phosphodiesterase 3B, cGMP-inh... 40 5.5
21gb|CP000152.1| Burkholderia sp. 383 chromosome 2, complete sequence 40 5.5
22ref|XM_470689.1| Oryza sativa (japonica cultivar-group), mRNA 40 5.5
23gb|CP000143.1| Rhodobacter sphaeroides 2.4.1 chromosome 1, compl... 40 5.5
24gb|AC087553.3| Oryza sativa (japonica cultivar-group) chromosome... 40 5.5
25gb|CP000125.1| Burkholderia pseudomallei 1710b chromosome II, co... 40 5.5
26gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 40 5.5
27gb|CP000271.1| Burkholderia xenovorans LB400 chromosome 2, compl... 40 5.5
28gb|AC084765.9| Oryza sativa chromosome 3 BAC OSJNBa0090L05 genom... 40 5.5
29emb|Z86111.1|SKZ86111 Streptomyces lividans rpsP, trmD, rplS, si... 40 5.5
30emb|BX640419.1| Bordetella pertussis strain Tohama I, complete g... 40 5.5
31emb|BX571966.1| Burkholderia pseudomallei strain K96243, chromos... 40 5.5
32emb|AL939124.1|SCO939124 Streptomyces coelicolor A3(2) complete ... 40 5.5
33emb|AJ851613.1| Gallus gallus mRNA for hypothetical protein, clo... 40 5.5
34gb|CP000230.1| Rhodospirillum rubrum ATCC 11170, complete genome 40 5.5
35gb|CP000011.2| Burkholderia mallei ATCC 23344 chromosome 2, comp... 40 5.5
36dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic D... 40 5.5
37gb|AC025259.49| Homo sapiens 12 BAC RP11-1100L3 (Roswell Park Ca... 40 5.5
38ref|NM_001009843.1| Felis catus CD8 antigen, alpha polypeptide (... 40 5.5
39gb|AF263912.1|AF263912 Streptomyces noursei ATCC 11455 nystatin ... 40 5.5
40dbj|AP004117.3| Oryza sativa (japonica cultivar-group) genomic D... 40 5.5
41dbj|AP005631.3| Oryza sativa (japonica cultivar-group) genomic D... 40 5.5
42dbj|AP004111.3| Oryza sativa (japonica cultivar-group) genomic D... 40 5.5
43dbj|AK112008.1| Oryza sativa (japonica cultivar-group) cDNA clon... 40 5.5
44dbj|AK112004.1| Oryza sativa (japonica cultivar-group) cDNA clon... 40 5.5
45dbj|AK111709.1| Oryza sativa (japonica cultivar-group) cDNA clon... 40 5.5
46dbj|AB100603.1| Mus musculus Notch1 gene for transmembrane recep... 40 5.5
47dbj|AK100203.1| Oryza sativa (japonica cultivar-group) cDNA clon... 40 5.5
48dbj|AK062702.1| Oryza sativa (japonica cultivar-group) cDNA clon... 40 5.5
49gb|AC008369.1|AC008369 Drosophila melanogaster, chromosome 2R, r... 40 5.5
50gb|AE003810.3| Drosophila melanogaster chromosome 2R, section 40... 40 5.5
51dbj|D16536.1|CATCD8AC Felis catus mRNA for CD8 alpha-chain, comp... 40 5.5
52gb|AE017221.1| Thermus thermophilus HB27, complete genome 40 5.5
53gb|AC145958.3| Gallus gallus BAC clone CH261-16J12 from chromoso... 40 5.5
54emb|AL732541.11| Mouse DNA sequence from clone RP23-306D20 on ch... 40 5.5
55dbj|AB000485.1| Felis catus mRNA for CD8 alpha antigen, complete... 40 5.5 
>ref|NM_197633.1| Oryza sativa (japonica cultivar-group) hypothetical protein
           (OSJNBa0082M15.22), mRNA
          Length = 3246

 Score =  115 bits (58), Expect = 1e-22
 Identities = 100/114 (87%)
 Strand = Plus / Plus

                                                                       
Query: 295 ggccgagcgcctcctcgcggccgccaagctgaaccccaacgacggcgggcccttccgctc 354
           |||||||||| |||||||||| ||||||||| |||||||||||||||  |||||||||| 
Sbjct: 180 ggccgagcgcttcctcgcggcggccaagctggaccccaacgacggcgtccccttccgctt 239

                                                                 
Query: 355 cctcggccaccactacgcccgcgccggcgacgcgcagcgcgcggtcaggtgcta 408
           |||||||||||| || || |  ||||||||||||||||| |||| || ||||||
Sbjct: 240 cctcggccaccattatgcgcttgccggcgacgcgcagcgagcggccaagtgcta 293
to top
>gb|AC020666.8| Oryza sativa chromosome 10 BAC OSJNBa0082M15 genomic sequence, complete
              sequence
          Length = 158550

 Score =  115 bits (58), Expect = 1e-22
 Identities = 100/114 (87%)
 Strand = Plus / Plus

                                                                          
Query: 295    ggccgagcgcctcctcgcggccgccaagctgaaccccaacgacggcgggcccttccgctc 354
              |||||||||| |||||||||| ||||||||| |||||||||||||||  |||||||||| 
Sbjct: 130442 ggccgagcgcttcctcgcggcggccaagctggaccccaacgacggcgtccccttccgctt 130501

                                                                    
Query: 355    cctcggccaccactacgcccgcgccggcgacgcgcagcgcgcggtcaggtgcta 408
              |||||||||||| || || |  ||||||||||||||||| |||| || ||||||
Sbjct: 130502 cctcggccaccattatgcgcttgccggcgacgcgcagcgagcggccaagtgcta 130555
to top
>dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 10, complete
                sequence
          Length = 22685906

 Score =  115 bits (58), Expect = 1e-22
 Identities = 100/114 (87%)
 Strand = Plus / Minus

                                                                            
Query: 295      ggccgagcgcctcctcgcggccgccaagctgaaccccaacgacggcgggcccttccgctc 354
                |||||||||| |||||||||| ||||||||| |||||||||||||||  |||||||||| 
Sbjct: 20933949 ggccgagcgcttcctcgcggcggccaagctggaccccaacgacggcgtccccttccgctt 20933890

                                                                      
Query: 355      cctcggccaccactacgcccgcgccggcgacgcgcagcgcgcggtcaggtgcta 408
                |||||||||||| || || |  ||||||||||||||||| |||| || ||||||
Sbjct: 20933889 cctcggccaccattatgcgcttgccggcgacgcgcagcgagcggccaagtgcta 20933836
to top
>dbj|AK103617.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033133L07, full
           insert sequence
          Length = 3864

 Score =  115 bits (58), Expect = 1e-22
 Identities = 100/114 (87%)
 Strand = Plus / Plus

                                                                       
Query: 295 ggccgagcgcctcctcgcggccgccaagctgaaccccaacgacggcgggcccttccgctc 354
           |||||||||| |||||||||| ||||||||| |||||||||||||||  |||||||||| 
Sbjct: 277 ggccgagcgcttcctcgcggcggccaagctggaccccaacgacggcgtccccttccgctt 336

                                                                 
Query: 355 cctcggccaccactacgcccgcgccggcgacgcgcagcgcgcggtcaggtgcta 408
           |||||||||||| || || |  ||||||||||||||||| |||| || ||||||
Sbjct: 337 cctcggccaccattatgcgcttgccggcgacgcgcagcgagcggccaagtgcta 390
to top
>gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome 10, complete sequence
          Length = 22698374

 Score =  115 bits (58), Expect = 1e-22
 Identities = 100/114 (87%)
 Strand = Plus / Minus

                                                                            
Query: 295      ggccgagcgcctcctcgcggccgccaagctgaaccccaacgacggcgggcccttccgctc 354
                |||||||||| |||||||||| ||||||||| |||||||||||||||  |||||||||| 
Sbjct: 20945213 ggccgagcgcttcctcgcggcggccaagctggaccccaacgacggcgtccccttccgctt 20945154

                                                                      
Query: 355      cctcggccaccactacgcccgcgccggcgacgcgcagcgcgcggtcaggtgcta 408
                |||||||||||| || || |  ||||||||||||||||| |||| || ||||||
Sbjct: 20945153 cctcggccaccattatgcgcttgccggcgacgcgcagcgagcggccaagtgcta 20945100
to top
>gb|AC136525.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone P0585E02,
             complete sequence
          Length = 138677

 Score = 60.0 bits (30), Expect = 6e-06
 Identities = 60/70 (85%)
 Strand = Plus / Minus

                                                                         
Query: 295   ggccgagcgcctcctcgcggccgccaagctgaaccccaacgacggcgggcccttccgctc 354
             |||||||| | ||||||  || |||||||||||||||||||||||||  | |||||||| 
Sbjct: 17179 ggccgagcacttcctcgatgcggccaagctgaaccccaacgacggcgtcctcttccgctt 17120

                       
Query: 355   cctcggccac 364
             ||| ||||||
Sbjct: 17119 cctaggccac 17110
to top
>gb|AC145476.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone B1023E01,
             complete sequence
          Length = 140322

 Score = 60.0 bits (30), Expect = 6e-06
 Identities = 60/70 (85%)
 Strand = Plus / Minus

                                                                         
Query: 295   ggccgagcgcctcctcgcggccgccaagctgaaccccaacgacggcgggcccttccgctc 354
             |||||||| | ||||||  || |||||||||||||||||||||||||  | |||||||| 
Sbjct: 43952 ggccgagcacttcctcgatgcggccaagctgaaccccaacgacggcgtcctcttccgctt 43893

                       
Query: 355   cctcggccac 364
             ||| ||||||
Sbjct: 43892 cctaggccac 43883
to top
>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete
                sequence
          Length = 29737217

 Score = 60.0 bits (30), Expect = 6e-06
 Identities = 60/70 (85%)
 Strand = Plus / Minus

                                                                            
Query: 295      ggccgagcgcctcctcgcggccgccaagctgaaccccaacgacggcgggcccttccgctc 354
                |||||||| | ||||||  || |||||||||||||||||||||||||  | |||||||| 
Sbjct: 13588044 ggccgagcacttcctcgatgcggccaagctgaaccccaacgacggcgtcctcttccgctt 13587985

                          
Query: 355      cctcggccac 364
                ||| ||||||
Sbjct: 13587984 cctaggccac 13587975



 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 373     ccgcgccggcgacgcgcagc 392
               ||||||||||||||||||||
Sbjct: 4203891 ccgcgccggcgacgcgcagc 4203872
to top
>ref|XM_464380.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 1572

 Score = 44.1 bits (22), Expect = 0.35
 Identities = 31/34 (91%)
 Strand = Plus / Minus

                                             
Query: 281 ggcgcggaggaggaggccgagcgcctcctcgcgg 314
           ||||||||||||| |||||||| | |||||||||
Sbjct: 489 ggcgcggaggaggcggccgagctcgtcctcgcgg 456
to top
>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete
               sequence
          Length = 35954743

 Score = 44.1 bits (22), Expect = 0.35
 Identities = 31/34 (91%)
 Strand = Plus / Minus

                                                 
Query: 281     ggcgcggaggaggaggccgagcgcctcctcgcgg 314
               ||||||||||||| |||||||| | |||||||||
Sbjct: 4829156 ggcgcggaggaggcggccgagctcgtcctcgcgg 4829123



 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                    
Query: 209      caccagcagcaccgcagcac 228
                ||||||||||||||||||||
Sbjct: 23718183 caccagcagcaccgcagcac 23718202



 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 209     caccagcagcaccgcagcac 228
               ||||||||||||||||||||
Sbjct: 9231999 caccagcagcaccgcagcac 9231980



 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 300     agcgcctcctcgcggccgcc 319
               ||||||||||||||||||||
Sbjct: 8205337 agcgcctcctcgcggccgcc 8205318
to top
>dbj|AP004000.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC
              clone:OJ1115_B01
          Length = 129329

 Score = 44.1 bits (22), Expect = 0.35
 Identities = 31/34 (91%)
 Strand = Plus / Minus

                                                
Query: 281    ggcgcggaggaggaggccgagcgcctcctcgcgg 314
              ||||||||||||| |||||||| | |||||||||
Sbjct: 109746 ggcgcggaggaggcggccgagctcgtcctcgcgg 109713
to top
>dbj|AP003990.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC
             clone:OJ1073_F05
          Length = 124252

 Score = 44.1 bits (22), Expect = 0.35
 Identities = 31/34 (91%)
 Strand = Plus / Minus

                                               
Query: 281   ggcgcggaggaggaggccgagcgcctcctcgcgg 314
             ||||||||||||| |||||||| | |||||||||
Sbjct: 71315 ggcgcggaggaggcggccgagctcgtcctcgcgg 71282
to top
>dbj|BA000040.2| Bradyrhizobium japonicum USDA 110 DNA, complete genome
          Length = 9105828

 Score = 44.1 bits (22), Expect = 0.35
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                     
Query: 291     aggaggccgagcgcctcctcgc 312
               ||||||||||||||||||||||
Sbjct: 9084217 aggaggccgagcgcctcctcgc 9084238
to top
>gb|U64032.1|OCU64032 Oryctolagus cuniculus alpha 1d adrenoceptor mRNA, complete cds
          Length = 1731

 Score = 44.1 bits (22), Expect = 0.35
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                      
Query: 373  ccgcgccggcgacgcgcagcgcgcgg 398
            ||||||||||| ||||||||||||||
Sbjct: 1575 ccgcgccggcggcgcgcagcgcgcgg 1600
to top
>gb|CP000301.1| Rhodopseudomonas palustris BisB18, complete genome
          Length = 5513844

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                    
Query: 373     ccgcgccggcgacgcgcagcg 393
               |||||||||||||||||||||
Sbjct: 2053265 ccgcgccggcgacgcgcagcg 2053245
to top
>gb|CP000250.1| Rhodopseudomonas palustris HaA2, complete genome
          Length = 5331656

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                        
Query: 374     cgcgccggcgacgcgcagcgcgcgg 398
               |||| ||||||||||||||||||||
Sbjct: 1941532 cgcgtcggcgacgcgcagcgcgcgg 1941556
to top
>gb|AE004900.1| Pseudomonas aeruginosa PAO1, section 461 of 529 of the complete
            genome
          Length = 10147

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 367  ctacgcccgcgccggcgacgc 387
            |||||||||||||||||||||
Sbjct: 1404 ctacgcccgcgccggcgacgc 1424
to top
>gb|CP000031.1| Silicibacter pomeroyi DSS-3, complete genome
          Length = 4109442

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                       
Query: 359     ggccaccactacgcccgcgccggc 382
               ||||||||| ||||||||||||||
Sbjct: 2286138 ggccaccacgacgcccgcgccggc 2286115
to top
>gb|BC042060.1| Homo sapiens olfactory receptor, family 7, subfamily E, member 47
           pseudogene, mRNA (cDNA clone IMAGE:5590288)
          Length = 1422

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 280 gggcgcggaggaggaggccg 299
           ||||||||||||||||||||
Sbjct: 271 gggcgcggaggaggaggccg 252
to top
>ref|NM_001031182.1| Gallus gallus phosphodiesterase 3B, cGMP-inhibited (PDE3B), mRNA
          Length = 4104

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 202 ggcggagcaccagcagcacc 221
           ||||||||||||||||||||
Sbjct: 969 ggcggagcaccagcagcacc 988
to top
>gb|CP000152.1| Burkholderia sp. 383 chromosome 2, complete sequence
          Length = 3587082

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                       
Query: 375     gcgccggcgacgcgcagcgcgcgg 398
               |||||||||||||||||| |||||
Sbjct: 2583072 gcgccggcgacgcgcagcacgcgg 2583095
to top
>ref|XM_470689.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 1500

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 277  gcagggcgcggaggaggagg 296
            ||||||||||||||||||||
Sbjct: 981  gcagggcgcggaggaggagg 1000
to top
>gb|CP000143.1| Rhodobacter sphaeroides 2.4.1 chromosome 1, complete genome
          Length = 3188609

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 29/32 (90%)
 Strand = Plus / Minus

                                              
Query: 294    aggccgagcgcctcctcgcggccgccaagctg 325
              |||||||||||||||||| | |||| ||||||
Sbjct: 513155 aggccgagcgcctcctcgagcccgcgaagctg 513124
to top
>gb|AC087553.3| Oryza sativa (japonica cultivar-group) chromosome 5 clone P0685E10,
             complete sequence
          Length = 156772

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 373   ccgcgccggcgacgcgcagc 392
             ||||||||||||||||||||
Sbjct: 90370 ccgcgccggcgacgcgcagc 90351
to top
>gb|CP000125.1| Burkholderia pseudomallei 1710b chromosome II, complete sequence
          Length = 3181762

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 370    cgcccgcgccggcgacgcgc 389
              ||||||||||||||||||||
Sbjct: 101201 cgcccgcgccggcgacgcgc 101182
to top
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3
          Length = 36102668

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                    
Query: 277      gcagggcgcggaggaggagg 296
                ||||||||||||||||||||
Sbjct: 14556508 gcagggcgcggaggaggagg 14556527
to top
>gb|CP000271.1| Burkholderia xenovorans LB400 chromosome 2, complete sequence
          Length = 3363523

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 379     cggcgacgcgcagcgcgcgg 398
               ||||||||||||||||||||
Sbjct: 1133214 cggcgacgcgcagcgcgcgg 1133233
to top
>gb|AC084765.9| Oryza sativa chromosome 3 BAC OSJNBa0090L05 genomic sequence, complete
              sequence
          Length = 147130

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 277    gcagggcgcggaggaggagg 296
              ||||||||||||||||||||
Sbjct: 101203 gcagggcgcggaggaggagg 101184
to top
>emb|Z86111.1|SKZ86111 Streptomyces lividans rpsP, trmD, rplS, sipW, sipX, sipY, sipZ, mutT
            genes and 4 open reading frames
          Length = 7860

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 382  cgacgcgcagcgcgcggtca 401
            ||||||||||||||||||||
Sbjct: 1522 cgacgcgcagcgcgcggtca 1541
to top
>emb|BX640419.1| Bordetella pertussis strain Tohama I, complete genome; segment 9/12
          Length = 349672

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                         
Query: 369   acgcccgcgccggcgacgcgcagcgcgc 396
             |||||||||||  |||||||||||||||
Sbjct: 47299 acgcccgcgccatcgacgcgcagcgcgc 47326
to top
>emb|BX571966.1| Burkholderia pseudomallei strain K96243, chromosome 2, complete sequence
          Length = 3173005

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 370     cgcccgcgccggcgacgcgc 389
               ||||||||||||||||||||
Sbjct: 1496789 cgcccgcgccggcgacgcgc 1496770
to top
>emb|AL939124.1|SCO939124 Streptomyces coelicolor A3(2) complete genome; segment 21/29
          Length = 308050

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 382    cgacgcgcagcgcgcggtca 401
              ||||||||||||||||||||
Sbjct: 117422 cgacgcgcagcgcgcggtca 117441
to top
>emb|AJ851613.1| Gallus gallus mRNA for hypothetical protein, clone 11f1
          Length = 4104

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 202 ggcggagcaccagcagcacc 221
           ||||||||||||||||||||
Sbjct: 969 ggcggagcaccagcagcacc 988
to top
>gb|CP000230.1| Rhodospirillum rubrum ATCC 11170, complete genome
          Length = 4352825

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 371    gcccgcgccggcgacgcgca 390
              ||||||||||||||||||||
Sbjct: 650103 gcccgcgccggcgacgcgca 650084
to top
>gb|CP000011.2| Burkholderia mallei ATCC 23344 chromosome 2, complete sequence
          Length = 2325379

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 370     cgcccgcgccggcgacgcgc 389
               ||||||||||||||||||||
Sbjct: 1080702 cgcccgcgccggcgacgcgc 1080683
to top
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete
                sequence
          Length = 36192742

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                    
Query: 277      gcagggcgcggaggaggagg 296
                ||||||||||||||||||||
Sbjct: 14551483 gcagggcgcggaggaggagg 14551502
to top
>gb|AC025259.49| Homo sapiens 12 BAC RP11-1100L3 (Roswell Park Cancer Institute Human
            BAC Library) complete sequence
          Length = 212622

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 280  gggcgcggaggaggaggccg 299
            ||||||||||||||||||||
Sbjct: 3755 gggcgcggaggaggaggccg 3774
to top
>ref|NM_001009843.1| Felis catus CD8 antigen, alpha polypeptide (CD8A), mRNA
          Length = 795

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 361 ccaccactacgcccgcgccg 380
           ||||||||||||||||||||
Sbjct: 432 ccaccactacgcccgcgccg 451
to top
>gb|AF263912.1|AF263912 Streptomyces noursei ATCC 11455 nystatin biosynthetic gene cluster,
             complete sequence
          Length = 123580

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 294   aggccgagcgcctcctcgcg 313
             ||||||||||||||||||||
Sbjct: 17385 aggccgagcgcctcctcgcg 17404
to top
>dbj|AP004117.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC
             clone:OJ1134_F06
          Length = 130968

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 300   agcgcctcctcgcggccgcc 319
             ||||||||||||||||||||
Sbjct: 37483 agcgcctcctcgcggccgcc 37464
to top
>dbj|AP005631.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC
             clone:OSJNBb0049K19
          Length = 131932

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 209   caccagcagcaccgcagcac 228
             ||||||||||||||||||||
Sbjct: 91717 caccagcagcaccgcagcac 91698
to top
>dbj|AP004111.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC
             clone:OJ1058_F07
          Length = 95841

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 209   caccagcagcaccgcagcac 228
             ||||||||||||||||||||
Sbjct: 28767 caccagcagcaccgcagcac 28786
to top
>dbj|AK112008.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-208-E07, full
           insert sequence
          Length = 1190

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 300 agcgcctcctcgcggccgcc 319
           ||||||||||||||||||||
Sbjct: 142 agcgcctcctcgcggccgcc 161
to top
>dbj|AK112004.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-201-H02, full
           insert sequence
          Length = 1204

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 300 agcgcctcctcgcggccgcc 319
           ||||||||||||||||||||
Sbjct: 156 agcgcctcctcgcggccgcc 175
to top
>dbj|AK111709.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023025I02, full
           insert sequence
          Length = 1389

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 300 agcgcctcctcgcggccgcc 319
           ||||||||||||||||||||
Sbjct: 141 agcgcctcctcgcggccgcc 160
to top
>dbj|AB100603.1| Mus musculus Notch1 gene for transmembrane receptor Notch1, complete
             cds
          Length = 60667

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 256   catgtccgcccccgcggcga 275
             ||||||||||||||||||||
Sbjct: 13457 catgtccgcccccgcggcga 13438
to top
>dbj|AK100203.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023041B08, full
           insert sequence
          Length = 1901

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 300 agcgcctcctcgcggccgcc 319
           ||||||||||||||||||||
Sbjct: 141 agcgcctcctcgcggccgcc 160
to top
>dbj|AK062702.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-106-B03, full
           insert sequence
          Length = 715

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 373 ccgcgccggcgacgcgcagc 392
           ||||||||||||||||||||
Sbjct: 214 ccgcgccggcgacgcgcagc 195
to top
>gb|AC008369.1|AC008369 Drosophila melanogaster, chromosome 2R, region 52A4-52B4, P1 clones
              BACR48C01 and DS08592, complete sequence
          Length = 192366

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 177    tctgccgctgattcttctgctgct 200
              |||||||||| |||||||||||||
Sbjct: 115024 tctgccgctgtttcttctgctgct 115001
to top
>gb|AE003810.3| Drosophila melanogaster chromosome 2R, section 40 of 73 of the complete
              sequence
          Length = 271178

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 177    tctgccgctgattcttctgctgct 200
              |||||||||| |||||||||||||
Sbjct: 192382 tctgccgctgtttcttctgctgct 192359
to top
>dbj|D16536.1|CATCD8AC Felis catus mRNA for CD8 alpha-chain, complete cds
          Length = 785

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 361 ccaccactacgcccgcgccg 380
           ||||||||||||||||||||
Sbjct: 422 ccaccactacgcccgcgccg 441
to top
>gb|AE017221.1| Thermus thermophilus HB27, complete genome
          Length = 1894877

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 279    agggcgcggaggaggaggcc 298
              ||||||||||||||||||||
Sbjct: 604465 agggcgcggaggaggaggcc 604484
to top
>gb|AC145958.3| Gallus gallus BAC clone CH261-16J12 from chromosome unknown, complete
              sequence
          Length = 207441

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 189    tcttctgctgctcggcggag 208
              ||||||||||||||||||||
Sbjct: 201533 tcttctgctgctcggcggag 201514
to top
>emb|AL732541.11| Mouse DNA sequence from clone RP23-306D20 on chromosome 2, complete
             sequence
          Length = 213918

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 256   catgtccgcccccgcggcga 275
             ||||||||||||||||||||
Sbjct: 23123 catgtccgcccccgcggcga 23104
to top
>dbj|AB000485.1| Felis catus mRNA for CD8 alpha antigen, complete cds
          Length = 795

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 361 ccaccactacgcccgcgccg 380
           ||||||||||||||||||||
Sbjct: 432 ccaccactacgcccgcgccg 451


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 3,326,133
Number of Sequences: 3902068
Number of extensions: 3326133
Number of successful extensions: 67584
Number of sequences better than 10.0: 55
Number of HSP's better than 10.0 without gapping: 58
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 65592
Number of HSP's gapped (non-prelim): 1992
length of query: 411
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 389
effective length of database: 17,147,199,772
effective search space: 6670260711308
effective search space used: 6670260711308
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
to top