>IWS1_USTMA (Q4P7X6) Transcription factor IWS1|
          Length = 380

 Score = 32.3 bits (72), Expect = 0.57
 Identities = 17/44 (38%), Positives = 24/44 (54%)
 Frame = -1

Query: 351 DGRVK*SEKRRTGNMASTAIRRRRTERQPTDSLAACRGAAPARR 220
           DG V+  E+    NM    IRR RT+R   ++L A +  AP +R
Sbjct: 140 DGEVEQEEEDPYANMTEAEIRRARTDRMIDEALRAGKKKAPRKR 183

>SSPO_BOVIN (P98167) SCO-spondin (Fragment)|
          Length = 867

 Score = 32.0 bits (71), Expect = 0.74
 Identities = 24/76 (31%), Positives = 29/76 (38%), Gaps = 13/76 (17%)
 Frame = -1

Query: 297 AIRRRRTERQPTDSLAACRGAAPARRLRLHADSVALCPIAGLAAGAQPWG---------- 148
           A +RR   R P        G+ P  RLR     V  CP+AG  A  + WG          
Sbjct: 782 AFQRRELLRPPLPG-----GSCPPDRLRSQPCFVQACPVAGAWAEWEAWGPCSVSCGGGH 836

Query: 147 ---GRSCRAWPPRGDG 109
               RSC   PP+  G
Sbjct: 837 RSRRRSCMDPPPKNGG 852

>PHK_NITEU (Q82T07) Probable phosphoketolase (EC 4.1.2.-)|
          Length = 790

 Score = 30.8 bits (68), Expect = 1.7
 Identities = 20/42 (47%), Positives = 24/42 (57%), Gaps = 3/42 (7%)
 Frame = -3

Query: 442 LPIPHPADDEIWNPAAVARVSRLPLDQLVDG---RPGEVVGE 326
           LPI H    +I NP  +AR+SR  LDQL  G   +P  V GE
Sbjct: 200 LPILHLNGYKIANPTILARISREELDQLFQGYGYQPYIVEGE 241

>M3K1_MOUSE (P53349) Mitogen-activated protein kinase kinase kinase 1 (EC|
           2.7.11.25) (MAPK/ERK kinase kinase 1) (MEK kinase 1)
           (MEKK 1)
          Length = 1493

 Score = 30.4 bits (67), Expect = 2.2
 Identities = 14/27 (51%), Positives = 17/27 (62%)
 Frame = -2

Query: 296 PSDEDERSGNRPIRWQPAAVPPPPGAS 216
           PS E   +     R+QPAA PPPPGA+
Sbjct: 96  PSPEPADAAAGASRFQPAAGPPPPGAA 122

>NUP98_RAT (P49793) Nuclear pore complex protein Nup98 (Nucleoporin Nup98) (98|
           kDa nucleoporin)
          Length = 937

 Score = 30.0 bits (66), Expect = 2.8
 Identities = 18/45 (40%), Positives = 25/45 (55%)
 Frame = +2

Query: 317 VLRFSDYFTRPSIDELVEREAADPGYCGRVPDFVVGRVRYGQVKF 451
           VL    Y+T PS+D+L  +   + G C  V DF +GR  YG + F
Sbjct: 734 VLTKVGYYTIPSMDDLA-KITNEKGEC-IVSDFTIGRKGYGSIYF 776

>YG3J_YEAST (P48234) Hypothetical WD-repeat protein in MOL1-NAT2 intergenic|
           region
          Length = 707

 Score = 29.6 bits (65), Expect = 3.7
 Identities = 12/27 (44%), Positives = 19/27 (70%)
 Frame = -3

Query: 415 EIWNPAAVARVSRLPLDQLVDGRPGEV 335
           E W+P + +RVS+L L+  +D RP +V
Sbjct: 205 EFWDPRSRSRVSKLYLENNIDNRPFQV 231

>NUP98_HUMAN (P52948) Nuclear pore complex protein Nup98-Nup96 precursor|
           [Contains: Nuclear pore complex protein Nup98
           (Nucleoporin Nup98) (98 kDa nucleoporin); Nuclear pore
           complex protein Nup96 (Nucleoporin Nup96) (96 kDa
           nucleoporin)]
          Length = 1729

 Score = 29.6 bits (65), Expect = 3.7
 Identities = 16/39 (41%), Positives = 23/39 (58%)
 Frame = +2

Query: 335 YFTRPSIDELVEREAADPGYCGRVPDFVVGRVRYGQVKF 451
           Y+T PS+D+L  +   + G C  V DF +GR  YG + F
Sbjct: 741 YYTIPSMDDLA-KITNEKGEC-IVSDFTIGRKGYGSIYF 777

>ERF_HUMAN (P50548) ETS domain-containing transcription factor ERF (Ets2|
           repressor factor)
          Length = 548

 Score = 29.6 bits (65), Expect = 3.7
 Identities = 18/43 (41%), Positives = 21/43 (48%), Gaps = 8/43 (18%)
 Frame = -2

Query: 293 SDEDERSGNRPIRWQPAAVPPPP--------GASDCTPIQSRF 189
           SDEDE  G   +   P A P PP        GAS C P++ RF
Sbjct: 444 SDEDEEDGE--VFKTPRAPPAPPKPEPGEAPGASQCMPLKLRF 484

>PME17_CHICK (Q98917) Melanocyte protein Pmel 17 precursor (115 kDa melanosomal|
           matrix protein)
          Length = 763

 Score = 29.6 bits (65), Expect = 3.7
 Identities = 18/49 (36%), Positives = 22/49 (44%), Gaps = 5/49 (10%)
 Frame = -1

Query: 219 LRLHADSVALCPIAGLAAGAQPWGGRS-----CRAWPPRGDGFAAWETA 88
           +RLH   V L  +  L    Q  GGRS       AW  R   F +W+TA
Sbjct: 1   MRLHGAIVLLAALLALVTAQQRGGGRSRGGVKGSAWGGRPAPFRSWDTA 49

>SKI_MOUSE (Q60698) Ski oncogene (C-ski)|
          Length = 725

 Score = 29.3 bits (64), Expect = 4.8
 Identities = 18/74 (24%), Positives = 26/74 (35%)
 Frame = +2

Query: 146 PPQGCAPAASPAIGQSATESACNXXXXXXXXXXXXXSESVGCRSVRLRLMAVDAMFPVLR 325
           PP    P       QS   S  +             ++S+GC   R RL A     P + 
Sbjct: 325 PPASIRPKTDDTSSQSPASSEKDKQSTWLRTLAGSSNKSLGCTHPRQRLSAFRPWSPAVS 384

Query: 326 FSDYFTRPSIDELV 367
            S+  T P +  L+
Sbjct: 385 ASEKETSPHLPALI 398

>PHK_STRAW (Q82NM9) Probable phosphoketolase (EC 4.1.2.-)|
          Length = 793

 Score = 29.3 bits (64), Expect = 4.8
 Identities = 20/63 (31%), Positives = 28/63 (44%)
 Frame = -3

Query: 442 LPIPHPADDEIWNPAAVARVSRLPLDQLVDGRPGEVVGEAQDREHGVDSHQTKTNGAATD 263
           LPI H    +I NP  ++R+    LD+L+ G   E +    D  H V     +    A D
Sbjct: 204 LPILHLNGYKIANPTVLSRIPEPELDELLRGYGHEPLHVTGDDPHQVHRALAEAFDRALD 263

Query: 262 RFA 254
           R A
Sbjct: 264 RVA 266

>NU189_SCHPO (Q9UTK4) Nucleoporin nup189 (Nuclear pore protein nup189)|
          Length = 1778

 Score = 29.3 bits (64), Expect = 4.8
 Identities = 19/45 (42%), Positives = 24/45 (53%)
 Frame = +2

Query: 317 VLRFSDYFTRPSIDELVEREAADPGYCGRVPDFVVGRVRYGQVKF 451
           V+   DY+ +PSI+EL +        C  V  F VGR  YGQV F
Sbjct: 790 VVLSDDYWMKPSIEELSKYPKEK--LCS-VHQFSVGRTGYGQVAF 831

>GCSP_BDEBA (Q6MPZ6) Glycine dehydrogenase [decarboxylating] (EC 1.4.4.2)|
           (Glycine decarboxylase) (Glycine cleavage system
           P-protein)
          Length = 958

 Score = 29.3 bits (64), Expect = 4.8
 Identities = 14/29 (48%), Positives = 15/29 (51%)
 Frame = +2

Query: 122 GGHALQLLPPQGCAPAASPAIGQSATESA 208
           G H  + LP     P A PA G SAT SA
Sbjct: 724 GAHLAEFLPKHSLVPEAGPANGISATTSA 752

>PHK_STRCO (Q8CK51) Probable phosphoketolase (EC 4.1.2.-)|
          Length = 796

 Score = 29.3 bits (64), Expect = 4.8
 Identities = 20/63 (31%), Positives = 27/63 (42%)
 Frame = -3

Query: 442 LPIPHPADDEIWNPAAVARVSRLPLDQLVDGRPGEVVGEAQDREHGVDSHQTKTNGAATD 263
           LPI H    +I NP  +AR+    LD+L+ G   + V    D    V     +    A D
Sbjct: 204 LPILHLNGYKIANPTVLARLPETELDELLRGYGHDPVHVTGDDPAAVHRATARAMDTALD 263

Query: 262 RFA 254
           R A
Sbjct: 264 RIA 266

>GCNL2_MOUSE (Q9JHD2) General control of amino acid synthesis protein 5-like 2|
           (EC 2.3.1.48) (Histone acetyltransferase GCN5) (mmGCN5)
          Length = 830

 Score = 28.9 bits (63), Expect = 6.3
 Identities = 17/40 (42%), Positives = 20/40 (50%)
 Frame = +2

Query: 62  KPLHSTHPSAVSHAANPSPRGGHALQLLPPQGCAPAASPA 181
           +PLHS  P+  S  A PSP         P    APAA+PA
Sbjct: 17  RPLHSPAPAPTSTPA-PSPASASTPAPTPAPAPAPAAAPA 55

>HUNB_DROMU (O46250) Protein hunchback (Fragments)|
          Length = 174

 Score = 28.9 bits (63), Expect = 6.3
 Identities = 16/55 (29%), Positives = 25/55 (45%), Gaps = 10/55 (18%)
 Frame = +2

Query: 65  PLHSTHPSAVSHAANPSP----------RGGHALQLLPPQGCAPAASPAIGQSAT 199
           P+  T P+++  +  P+P          + G  LQL PP    P  SPA  Q ++
Sbjct: 99  PMQPTMPASMRPSPQPTPTRATAVATALQTGDKLQLTPPMDVTPPKSPAKSQQSS 153

>FTZF1_DROME (P33244) Nuclear hormone receptor FTZ-F1 (FTZ-F1 alpha)|
          Length = 1027

 Score = 28.5 bits (62), Expect = 8.2
 Identities = 15/44 (34%), Positives = 26/44 (59%), Gaps = 1/44 (2%)
 Frame = +2

Query: 77  THPSAVSHAANPSPRGGHALQLLPPQGCAP-AASPAIGQSATES 205
           T  +++S+ ANP+    H+++ L    CAP AASP    +++ S
Sbjct: 312 TTTTSMSNTANPTRSSLHSIEELAASSCAPRAASPNSNHTSSAS 355

>ZEP1_MOUSE (Q03172) Zinc finger protein 40 (Transcription factor alphaA-CRYBP1)|
            (Alpha A-crystallin-binding protein I) (Alpha A-CRYBP1)
          Length = 2688

 Score = 28.5 bits (62), Expect = 8.2
 Identities = 14/37 (37%), Positives = 18/37 (48%)
 Frame = +2

Query: 98   HAANPSPRGGHALQLLPPQGCAPAASPAIGQSATESA 208
            H +  SP    ALQL P  G AP+ S     +A + A
Sbjct: 1040 HESGRSPESADALQLQPVPGAAPSPSKHTSATAADQA 1076

>RABX5_HUMAN (Q9UJ41) Rab5 GDP/GTP exchange factor (Rabaptin 5-associated|
           exchange factor for Rab5) (Rabex-5)
          Length = 708

 Score = 28.5 bits (62), Expect = 8.2
 Identities = 15/38 (39%), Positives = 21/38 (55%)
 Frame = +2

Query: 101 AANPSPRGGHALQLLPPQGCAPAASPAIGQSATESACN 214
           A   + + GHAL LLP + C  A  PA+    T+ AC+
Sbjct: 31  ATPTATQAGHALPLLPQERC--AEFPALRGPPTQGACS 66

>TIP43_ORYSA (Q9LWR2) Probable aquaporin TIP4.3 (Tonoplast intrinsic protein|
           4.3) (OsTIP4.3)
          Length = 251

 Score = 28.5 bits (62), Expect = 8.2
 Identities = 16/45 (35%), Positives = 19/45 (42%), Gaps = 5/45 (11%)
 Frame = -1

Query: 183 IAGLAAGAQ-----PWGGRSCRAWPPRGDGFAAWETADGWVEWSG 64
           + GL  GA      P+ G S       G   AA E AD W+ W G
Sbjct: 175 LVGLVVGANILAGGPYSGASMNPARSFGPALAAGEWADHWIYWVG 219

>PLYA_MYCPO (Q12639) Pectin lyase precursor (EC 4.2.2.10)|
          Length = 299

 Score = 28.5 bits (62), Expect = 8.2
 Identities = 14/37 (37%), Positives = 20/37 (54%)
 Frame = -2

Query: 305 RRQPSDEDERSGNRPIRWQPAAVPPPPGASDCTPIQS 195
           +R  S ED  +  RP+R +P+A  PPP      P+ S
Sbjct: 33  KRAASLEDVATAERPLRCRPSASLPPPSRVTRLPLFS 69


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 54,474,433
Number of Sequences: 219361
Number of extensions: 978111
Number of successful extensions: 4953
Number of sequences better than 10.0: 21
Number of HSP's better than 10.0 without gapping: 4437
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4930
length of database: 80,573,946
effective HSP length: 102
effective length of database: 58,199,124
effective search space used: 2793557952
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)