ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bastl33a07 |
|---|---|
| Clone Library Name | barley_pub |
>MSH5_CAEEL (Q19272) MutS protein homolog 5| Length = 1369 Score = 30.4 bits (67), Expect = 2.5 Identities = 19/55 (34%), Positives = 29/55 (52%) Frame = +1 Query: 316 PQDSSHNVHLFKSSDLAPVSSIFASPHVNPPKESKILIRDDSVQLSQDSNSPIVS 480 P++ S N L +S+ P +I +S VNP + DDS+ SQD+ P V+ Sbjct: 1110 PKNRSMNQSLIQSARDTPHETIRSSNEVNPEFFNIFNFPDDSILKSQDTYDPNVT 1164
>BRD4_MOUSE (Q9ESU6) Bromodomain-containing protein 4 (Mitotic| chromosome-associated protein) (MCAP) Length = 1400 Score = 30.4 bits (67), Expect = 2.5 Identities = 15/46 (32%), Positives = 24/46 (52%) Frame = +1 Query: 280 FINNLSPIPPPKPQDSSHNVHLFKSSDLAPVSSIFASPHVNPPKES 417 F +L P PP P++ VHL + ++ PV P + PP++S Sbjct: 1161 FSTSLRPEPPKHPENIKAPVHLPQRPEMKPVD--IGRPVIRPPEQS 1204
>AXUD1_MOUSE (P59054) Axin-1 up-regulated gene 1 protein (TGF-beta-induced| apoptosis protein 3) (TAIP-3) Length = 583 Score = 29.6 bits (65), Expect = 4.3 Identities = 20/50 (40%), Positives = 24/50 (48%) Frame = +1 Query: 259 EDSPVFNFINNLSPIPPPKPQDSSHNVHLFKSSDLAPVSSIFASPHVNPP 408 ED+PV LSP PP KP SS SSD+ S+ +S PP Sbjct: 317 EDTPVEQAA--LSPFPPSKPPVSSELGDSSCSSDMTDSSTTLSSGSSEPP 364
>TEAD2_MOUSE (P48301) Transcriptional enhancer factor TEF-4 (TEA domain family| member 2) (TEAD-2) (Embryonic TEA domain-containing factor) (ETF) (ETEF-1) Length = 445 Score = 29.3 bits (64), Expect = 5.6 Identities = 24/80 (30%), Positives = 31/80 (38%) Frame = +1 Query: 232 PRAGAAAGFEDSPVFNFINNLSPIPPPKPQDSSHNVHLFKSSDLAPVSSIFASPHVNPPK 411 P A G+E P LSP+PPP P + ++ A + I S V PP Sbjct: 191 PPASDLPGYEPPPA------LSPLPPPAPSPPAWQA---RALGTARLQLIEFSAFVEPPD 241 Query: 412 ESKILIRDDSVQLSQDSNSP 471 R V +SQ SP Sbjct: 242 AVDSFQRHLFVHISQQCPSP 261
>CP4V3_MOUSE (Q9DBW0) Cytochrome P450 4V3 (EC 1.14.-.-)| Length = 525 Score = 29.3 bits (64), Expect = 5.6 Identities = 18/69 (26%), Positives = 29/69 (42%), Gaps = 1/69 (1%) Frame = -2 Query: 429 YQNFRFLW-WIDMW*GKDRRNRGQVRRLE*VHIM**VLXXXXXXXX*IVDKIEDRGVLES 253 Y+ + W W D+W + R R L+ +H I +++++R E Sbjct: 231 YRRMKMPWLWFDLWYLVFKEGRDHKRGLKCLHTF---------TNNVIAERVKERKAEED 281 Query: 252 GCGAGAGPI 226 GAG GPI Sbjct: 282 WTGAGRGPI 290
>FA20A_HUMAN (Q96MK3) Protein FAM20A precursor| Length = 541 Score = 28.9 bits (63), Expect = 7.3 Identities = 22/75 (29%), Positives = 35/75 (46%) Frame = +1 Query: 238 AGAAAGFEDSPVFNFINNLSPIPPPKPQDSSHNVHLFKSSDLAPVSSIFASPHVNPPKES 417 + AAA + V NF P +P SH S + + ++FA P N P+E Sbjct: 57 SAAAASDPGTIVHNFSRTE---PRTEPAGGSH------SGSSSKLQALFAHPLYNVPEEP 107 Query: 418 KILIRDDSVQLSQDS 462 +L +DS+ SQ++ Sbjct: 108 PLLGAEDSLLASQEA 122
>CREA_ASPOR (Q9P889) DNA-binding protein creA (Carbon catabolite repressor)| Length = 429 Score = 28.9 bits (63), Expect = 7.3 Identities = 22/58 (37%), Positives = 29/58 (50%), Gaps = 1/58 (1%) Frame = +1 Query: 238 AGAAAGFEDSPVFNFINNLSPIPPP-KPQDSSHNVHLFKSSDLAPVSSIFASPHVNPP 408 A AAA +++ + N N S +PPP KP S APVS + SP V+PP Sbjct: 145 AAAAAAGQENAMVNVTNAGSLMPPPTKPMTRS-----------APVSQV-GSPDVSPP 190
>OAS2_HUMAN (P29728) 2'-5'-oligoadenylate synthetase 2 (EC 2.7.7.-)| ((2-5')oligo(A) synthetase 2) (2-5A synthetase 2) (p69 OAS / p71 OAS) (p69OAS / p71OAS) Length = 726 Score = 28.9 bits (63), Expect = 7.3 Identities = 14/39 (35%), Positives = 21/39 (53%) Frame = +1 Query: 247 AAGFEDSPVFNFINNLSPIPPPKPQDSSHNVHLFKSSDL 363 + F+ P FN + LS P P+ + + L+KSSDL Sbjct: 476 SVSFDVLPAFNALGQLSSGSTPSPEVYAGLIDLYKSSDL 514
>Y779_METJA (Q58189) Hypothetical protein MJ0779| Length = 299 Score = 28.9 bits (63), Expect = 7.3 Identities = 16/54 (29%), Positives = 26/54 (48%) Frame = +1 Query: 232 PRAGAAAGFEDSPVFNFINNLSPIPPPKPQDSSHNVHLFKSSDLAPVSSIFASP 393 P A G V ++ ++PIPP KP+D S + + A + ++FA P Sbjct: 211 PAVAALLGAYLIAVSGMLSGVAPIPPVKPEDISKGFEIVQMG-TAIIGALFAIP 263
>MLL3_MOUSE (Q8BRH4) Myeloid/lymphoid or mixed-lineage leukemia protein 3 homolog| (Histone-lysine N-methyltransferase, H3 lysine-4 specific MLL3) (EC 2.1.1.43) Length = 4903 Score = 28.9 bits (63), Expect = 7.3 Identities = 24/101 (23%), Positives = 40/101 (39%), Gaps = 2/101 (1%) Frame = +1 Query: 184 PQPXXXXXXAMDTPDRPRAGAAAGFEDS--PVFNFINNLSPIPPPKPQDSSHNVHLFKSS 357 P P + TP P G + +S PV N + LS +P P + + + Sbjct: 1888 PSPVDPYAKMVGTPRPPPGGHSFPRRNSVTPVENCVP-LSSVPRPIHMNETSATRPSPAR 1946 Query: 358 DLAPVSSIFASPHVNPPKESKILIRDDSVQLSQDSNSPIVS 480 DL S + P+ PP + ++ D + SP++S Sbjct: 1947 DLCASSMTNSDPYAKPPDTPRPMMTDQFSKPFSLPRSPVIS 1987
>FOXF2_HUMAN (Q12947) Forkhead box protein F2 (Forkhead-related protein FKHL6)| (Forkhead-related transcription factor 2) (FREAC-2) (Forkhead-related activator 2) Length = 444 Score = 28.5 bits (62), Expect = 9.6 Identities = 21/76 (27%), Positives = 30/76 (39%) Frame = +1 Query: 181 SPQPXXXXXXAMDTPDRPRAGAAAGFEDSPVFNFINNLSPIPPPKPQDSSHNVHLFKSSD 360 SP P + P P AAG + ++ SP+P S+ H +S Sbjct: 277 SPNPGSTYMASCPVPAGPGGVGAAGGGGGGDYGPDSSSSPVPSSPAMASAIECHSPYTSP 336 Query: 361 LAPVSSIFASPHVNPP 408 A SS ASP++ P Sbjct: 337 AAHWSSPGASPYLKQP 352 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 47,253,788 Number of Sequences: 219361 Number of extensions: 722296 Number of successful extensions: 2718 Number of sequences better than 10.0: 11 Number of HSP's better than 10.0 without gapping: 2557 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 2712 length of database: 80,573,946 effective HSP length: 103 effective length of database: 57,979,763 effective search space used: 3246866728 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
