ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bastl33a03 |
|---|---|
| Clone Library Name | barley_pub |
>M3K4_HUMAN (Q9Y6R4) Mitogen-activated protein kinase kinase kinase 4 (EC| 2.7.11.25) (MAPK/ERK kinase kinase 4) (MEK kinase 4) (MEKK 4) (MAP three kinase 1) Length = 1607 Score = 33.9 bits (76), Expect = 0.23 Identities = 16/53 (30%), Positives = 29/53 (54%), Gaps = 1/53 (1%) Frame = +1 Query: 274 WDTGCLCLKFVLGGCVPSPWEDFQSSRKVLAVVGICHLPSSPD-LARVAADFL 429 W GC+ ++ V G PW +++ + +++ VG+ H P P+ L+ DFL Sbjct: 1528 WSLGCVVIEMVTG---KRPWHEYEHNFQIMYKVGMGHKPPIPERLSPEGKDFL 1577
>WIS4_SCHPO (O14299) MAP kinase kinase kinase wis4 (EC 2.7.11.25) (MAP kinase| kinase kinase wak1) (MAP kinase kinase kinase wik1) Length = 1401 Score = 32.7 bits (73), Expect = 0.52 Identities = 15/56 (26%), Positives = 28/56 (50%), Gaps = 3/56 (5%) Frame = +1 Query: 274 WDTGCLCLKFVLGGCVPSPWEDFQSSRKVLAVVGICHLPSSPD---LARVAADFLD 432 W GC+ L+ + G +PW + + ++ V H PS P ++ +A DF++ Sbjct: 1232 WSLGCVILEMMTGS---TPWSEMDNEWAIMYHVAAMHTPSIPQNEKISSLARDFIE 1284
>FMT_STRAW (Q827P7) Methionyl-tRNA formyltransferase (EC 2.1.2.9)| Length = 310 Score = 32.3 bits (72), Expect = 0.67 Identities = 18/51 (35%), Positives = 26/51 (50%), Gaps = 2/51 (3%) Frame = +1 Query: 262 AHQPWDTGCLCLKFVLGGCVPSP--WEDFQSSRKVLAVVGICHLPSSPDLA 408 AH W T L + V+ GC P+P W F+ R L ++ + +P DLA Sbjct: 210 AHVDWSTPALRVDRVVRGCTPAPGAWTVFRGER--LKLIQVVPVPERTDLA 258
>M3K4_MOUSE (O08648) Mitogen-activated protein kinase kinase kinase 4 (EC| 2.7.11.25) (MAPK/ERK kinase kinase 4) (MEK kinase 4) (MEKK 4) Length = 1597 Score = 32.3 bits (72), Expect = 0.67 Identities = 12/43 (27%), Positives = 24/43 (55%) Frame = +1 Query: 274 WDTGCLCLKFVLGGCVPSPWEDFQSSRKVLAVVGICHLPSSPD 402 W GC+ ++ V G PW +++ + +++ VG+ H P P+ Sbjct: 1518 WSLGCVVIEMVTG---KRPWHEYEHNFQIMYKVGMGHKPPIPE 1557
>YJS1_YEAST (P46987) Hypothetical 69.5 kDa protein in SWE1-ATP12 intergenic| region Length = 611 Score = 30.0 bits (66), Expect = 3.3 Identities = 13/28 (46%), Positives = 19/28 (67%) Frame = +3 Query: 18 SPPPRHTTCSVVRSRALPLPLRNGARAE 101 SPPP +T CS+ RS+ L +PL + R + Sbjct: 352 SPPPSNTGCSLHRSKPLHIPLSSVIRED 379
>YAP1_YEAST (P19880) AP-1-like transcription factor YAP1 (Phenanthroline| resistance protein PAR1) (Pleiotropic drug resistance protein PDR4) Length = 650 Score = 29.6 bits (65), Expect = 4.4 Identities = 16/30 (53%), Positives = 20/30 (66%) Frame = -3 Query: 137 STATRMADPDSMLSPGSIAEREGESSRSDD 48 STA R D ++SPGS+AE EG SR D+ Sbjct: 4 STAKRSLD---VVSPGSLAEFEGSKSRHDE 30
>SPEN_DROME (Q8SX83) Protein split ends| Length = 5560 Score = 29.6 bits (65), Expect = 4.4 Identities = 24/93 (25%), Positives = 40/93 (43%), Gaps = 2/93 (2%) Frame = +1 Query: 94 GLSIESGSAIRVAVLPVGGPIPPQCLRDYAALVARHARVDLASLRPYYSEHQK--SPFAH 267 G S +A+ A P GPI PQ +L+ + + + P+++ Q SP +H Sbjct: 3575 GSPTASQNAMPQASTPKQGPITPQQAIRTQSLIMQPPTISIPEQTPHFAVPQMVLSPQSH 3634 Query: 268 QPWDTGCLCLKFVLGGCVPSPWEDFQSSRKVLA 366 P G +++G PSP S + +A Sbjct: 3635 HPQQPG----TYMVGIRAPSPHSPLHSPGRGVA 3663
>CUBN_CANFA (Q9TU53) Cubilin precursor| Length = 3620 Score = 29.6 bits (65), Expect = 4.4 Identities = 18/46 (39%), Positives = 21/46 (45%) Frame = +1 Query: 286 CLCLKFVLGGCVPSPWEDFQSSRKVLAVVGICHLPSSPDLARVAAD 423 CLC G S ++D + K L V GIC DL RV AD Sbjct: 196 CLCSPETHGPQCASKYDDCEGGSKALCVHGICE-----DLVRVKAD 236
>NCAP_TACV (P18140) Nucleocapsid protein (Nucleoprotein)| Length = 570 Score = 29.3 bits (64), Expect = 5.7 Identities = 19/57 (33%), Positives = 25/57 (43%), Gaps = 1/57 (1%) Frame = +1 Query: 127 VAVLPVGGPIPPQCLRDYAALVARHARVDLASLRPYYSEHQKSPFAHQPWDT-GCLC 294 + +LP I Q D L+ H R DL + ++ Q F HQ WD G LC Sbjct: 447 IGLLPPNMVITTQGSDDIRKLLDIHGRKDLKLIDVKFTSDQARLFEHQVWDKFGHLC 503
>CO4A4_HUMAN (P53420) Collagen alpha-4(IV) chain precursor| Length = 1690 Score = 29.3 bits (64), Expect = 5.7 Identities = 11/20 (55%), Positives = 12/20 (60%) Frame = -2 Query: 144 HRQHRHPDGRPGLDAQPGLH 85 H+ R PDG PG QPG H Sbjct: 567 HKGERGPDGPPGFPGQPGSH 586
>VGLM_NYV (Q83887) Envelope polyprotein precursor [Contains: Glycoprotein 1| (G1); Glycoprotein 2 (G2)] Length = 1140 Score = 28.5 bits (62), Expect = 9.7 Identities = 13/20 (65%), Positives = 14/20 (70%) Frame = -3 Query: 137 STATRMADPDSMLSPGSIAE 78 ST R ADPD + SPG IAE Sbjct: 330 STLVRKADPDYVFSPGIIAE 349
>AGP1_YEAST (P25376) General amino acid permease AGP1 (Asparagine/glutamine| permease) Length = 595 Score = 28.5 bits (62), Expect = 9.7 Identities = 16/42 (38%), Positives = 21/42 (50%) Frame = -3 Query: 152 GPPTGSTATRMADPDSMLSPGSIAEREGESSRSDDGAGRVSG 27 GP AT+M D S +SP S +E E + S D G +G Sbjct: 69 GPQDEVEATQMNDLTSAISPSSRQAQELEKNESSDNIGANTG 110
>NQRF_CHLPN (Q9Z723) Probable Na(+)-translocating NADH-quinone reductase| subunit F (EC 1.6.5.-) (Na(+)-translocating NQR subunit F) (Na(+)-NQR subunit F) (NQR complex subunit F) (NQR-1 subunit F) Length = 431 Score = 28.5 bits (62), Expect = 9.7 Identities = 19/70 (27%), Positives = 31/70 (44%), Gaps = 5/70 (7%) Frame = +1 Query: 100 SIESGSAIRVAVLPVGGPIPPQC-----LRDYAALVARHARVDLASLRPYYSEHQKSPFA 264 ++ESG + V++L G PIP C + V ++A L + R +S+ Q Sbjct: 54 TVESGQTLLVSLLSSGIPIPSPCGGKATCKQCKVRVVKNADEPLETDRSTFSKRQ----L 109 Query: 265 HQPWDTGCLC 294 + W C C Sbjct: 110 EEGWRLSCQC 119 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 43,327,978 Number of Sequences: 219361 Number of extensions: 791690 Number of successful extensions: 3383 Number of sequences better than 10.0: 13 Number of HSP's better than 10.0 without gapping: 3146 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 3383 length of database: 80,573,946 effective HSP length: 103 effective length of database: 57,979,763 effective search space used: 3304846491 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
