ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name bastl33a01
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1ref|XM_477026.1| Oryza sativa (japonica cultivar-group), mRNA 432 e-118
2dbj|AK100095.1| Oryza sativa (japonica cultivar-group) cDNA clon... 432 e-118
3dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic D... 159 1e-35
4dbj|AP005259.3| Oryza sativa (japonica cultivar-group) genomic D... 159 1e-35
5ref|NM_187618.1| Oryza sativa (japonica cultivar-group), predic... 56 1e-04
6dbj|AK068454.1| Oryza sativa (japonica cultivar-group) cDNA clon... 56 1e-04
7gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 54 4e-04
8gb|AC104473.2| Oryza sativa (japonica cultivar-group) chromosome... 54 4e-04
9dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic D... 54 4e-04
10gb|AC146746.15| Medicago truncatula clone mth2-108p9, complete s... 44 0.39
11gb|AY123972.1| Arthrobacter sp. BP2 cyclohexanone oxidation gene... 44 0.39
12dbj|AB039951.1| Bacillus subtilis yuxH, yuzC, degQ, comQ, comX, ... 44 0.39
13dbj|AB010576.1| Bacillus subtilis ComX, ComQ and DegQ genes, com... 44 0.39
14ref|XM_472252.1| Oryza sativa (japonica cultivar-group), predic... 42 1.6
15gb|AE009089.1| Agrobacterium tumefaciens str. C58 circular chrom... 42 1.6
16gb|AY519500.1| Gallus gallus CNR/Pcdh-alpha gene cluster, comple... 42 1.6
17emb|CR626927.1| Bacteroides fragilis NCTC 9343, complete genome 42 1.6
18emb|AL731619.3|OSJN00267 Oryza sativa genomic DNA, chromosome 4,... 42 1.6
19gb|AE007869.1| Agrobacterium tumefaciens str. C58, complete genome 42 1.6
20ref|NG_004818.1| Gallus gallus cadherin-related neuronal recepto... 42 1.6
21dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic D... 42 1.6
22emb|AL662977.3|OSJN00176 Oryza sativa genomic DNA, chromosome 4,... 42 1.6
23emb|AL646052.1| Ralstonia solanacearum GMI1000 chromosome comple... 42 1.6
24gb|CP000143.1| Rhodobacter sphaeroides 2.4.1 chromosome 1, compl... 40 6.2
25gb|AC128644.4| Oryza sativa (japonica cultivar-group) chromosome... 40 6.2
26emb|AL591785.1|SME591785 Sinorhizobium meliloti 1021 complete ch... 40 6.2
27gb|AC156498.2| Mus musculus BAC clone RP24-300J13 from chromosom... 40 6.2
28gb|AC151605.2| Emiliania huxleyi clone JGIACCU-13A3, complete se... 40 6.2
29gb|U65510.1|RRU65510 Rhodospirillum rubrum alkyl hydroperoxide r... 40 6.2
30gb|CP000230.1| Rhodospirillum rubrum ATCC 11170, complete genome 40 6.2
31dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic D... 40 6.2
32gb|CP000252.1| Syntrophus aciditrophicus SB, complete genome 40 6.2
33gb|CP000251.1| Anaeromyxobacter dehalogenans 2CP-C, complete genome 40 6.2
34ref|XM_316442.2| Anopheles gambiae str. PEST ENSANGP00000021115 ... 40 6.2
35ref|XM_313144.2| Anopheles gambiae str. PEST ENSANGP00000013219 ... 40 6.2
36gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome... 40 6.2 
>ref|XM_477026.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 3193

 Score =  432 bits (218), Expect = e-118
 Identities = 293/318 (92%)
 Strand = Plus / Plus

                                                                       
Query: 140 gccatgtcgcagccgctcgtcgtgaagaaggacgacgacttagacgaggaagagtactac 199
           |||||| |||||||||||||||||||||||||||||||  | ||||||||||||||||||
Sbjct: 227 gccatggcgcagccgctcgtcgtgaagaaggacgacgatctcgacgaggaagagtactac 286

                                                                       
Query: 200 tcgccgttcctcggcatcgagaagggtgccgtcctgcaggaggcccgcgtcttccacgac 259
           |||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 287 tcgccgttcctcgggatcgagaagggcgccgtcctgcaggaggcccgcgtcttccacgac 346

                                                                       
Query: 260 ccgcagcttgatgcgcggcgatgctgccaggtgatcaccaagcttctatatctgctcaac 319
           |||||||| || ||||| || ||||||||||| ||||||||||| ||||| |||||||||
Sbjct: 347 ccgcagctcgacgcgcgccgttgctgccaggtcatcaccaagctcctatacctgctcaac 406

                                                                       
Query: 320 cagggtgacacctttaccaaggtagaggccacagaggtattcttcgctacgaccaagttg 379
           |||||||||||||| |||||||| |||||||||||||| || || || ||||||||||||
Sbjct: 407 cagggtgacaccttcaccaaggtggaggccacagaggtcttttttgcgacgaccaagttg 466

                                                                       
Query: 380 tttcagtccaaggatgctggacttaggaggatggtgtacctcatgatcaaggaactctcg 439
           ||||| ||||||||||| || |||||||| ||||||||||||||||||||||||||||| 
Sbjct: 467 tttcaatccaaggatgcaggccttaggagaatggtgtacctcatgatcaaggaactctcc 526

                             
Query: 440 ccgtcagcagatgaggtt 457
           || |||||||||||||||
Sbjct: 527 ccatcagcagatgaggtt 544
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>dbj|AK100095.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023004B12, full
           insert sequence
          Length = 3193

 Score =  432 bits (218), Expect = e-118
 Identities = 293/318 (92%)
 Strand = Plus / Plus

                                                                       
Query: 140 gccatgtcgcagccgctcgtcgtgaagaaggacgacgacttagacgaggaagagtactac 199
           |||||| |||||||||||||||||||||||||||||||  | ||||||||||||||||||
Sbjct: 227 gccatggcgcagccgctcgtcgtgaagaaggacgacgatctcgacgaggaagagtactac 286

                                                                       
Query: 200 tcgccgttcctcggcatcgagaagggtgccgtcctgcaggaggcccgcgtcttccacgac 259
           |||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 287 tcgccgttcctcgggatcgagaagggcgccgtcctgcaggaggcccgcgtcttccacgac 346

                                                                       
Query: 260 ccgcagcttgatgcgcggcgatgctgccaggtgatcaccaagcttctatatctgctcaac 319
           |||||||| || ||||| || ||||||||||| ||||||||||| ||||| |||||||||
Sbjct: 347 ccgcagctcgacgcgcgccgttgctgccaggtcatcaccaagctcctatacctgctcaac 406

                                                                       
Query: 320 cagggtgacacctttaccaaggtagaggccacagaggtattcttcgctacgaccaagttg 379
           |||||||||||||| |||||||| |||||||||||||| || || || ||||||||||||
Sbjct: 407 cagggtgacaccttcaccaaggtggaggccacagaggtcttttttgcgacgaccaagttg 466

                                                                       
Query: 380 tttcagtccaaggatgctggacttaggaggatggtgtacctcatgatcaaggaactctcg 439
           ||||| ||||||||||| || |||||||| ||||||||||||||||||||||||||||| 
Sbjct: 467 tttcaatccaaggatgcaggccttaggagaatggtgtacctcatgatcaaggaactctcc 526

                             
Query: 440 ccgtcagcagatgaggtt 457
           || |||||||||||||||
Sbjct: 527 ccatcagcagatgaggtt 544
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>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete
               sequence
          Length = 29644043

 Score =  159 bits (80), Expect = 1e-35
 Identities = 98/104 (94%)
 Strand = Plus / Plus

                                                                           
Query: 190     agagtactactcgccgttcctcggcatcgagaagggtgccgtcctgcaggaggcccgcgt 249
               |||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||
Sbjct: 5484834 agagtactactcgccgttcctcgggatcgagaagggcgccgtcctgcaggaggcccgcgt 5484893

                                                           
Query: 250     cttccacgacccgcagcttgatgcgcggcgatgctgccaggtga 293
               |||||||||||||||||| || ||||| || |||||||||||||
Sbjct: 5484894 cttccacgacccgcagctcgacgcgcgccgttgctgccaggtga 5484937



 Score =  149 bits (75), Expect = 9e-33
 Identities = 108/119 (90%)
 Strand = Plus / Plus

                                                                           
Query: 339     aggtagaggccacagaggtattcttcgctacgaccaagttgtttcagtccaaggatgctg 398
               |||| |||||||||||||| || || || ||||||||||||||||| ||||||||||| |
Sbjct: 5485742 aggtggaggccacagaggtcttttttgcgacgaccaagttgtttcaatccaaggatgcag 5485801

                                                                          
Query: 399     gacttaggaggatggtgtacctcatgatcaaggaactctcgccgtcagcagatgaggtt 457
               | |||||||| ||||||||||||||||||||||||||||| || |||||||||||||||
Sbjct: 5485802 gccttaggagaatggtgtacctcatgatcaaggaactctccccatcagcagatgaggtt 5485860



 Score = 79.8 bits (40), Expect = 7e-12
 Identities = 52/56 (92%)
 Strand = Plus / Plus

                                                                       
Query: 288     aggtgatcaccaagcttctatatctgctcaaccagggtgacacctttaccaaggta 343
               |||| ||||||||||| ||||| ||||||||||||||||||||||| |||||||||
Sbjct: 5485026 aggtcatcaccaagctcctatacctgctcaaccagggtgacaccttcaccaaggta 5485081



 Score = 71.9 bits (36), Expect = 2e-09
 Identities = 48/52 (92%)
 Strand = Plus / Plus

                                                                   
Query: 140     gccatgtcgcagccgctcgtcgtgaagaaggacgacgacttagacgaggaag 191
               |||||| |||||||||||||||||||||||||||||||  | ||||||||||
Sbjct: 5484550 gccatggcgcagccgctcgtcgtgaagaaggacgacgatctcgacgaggaag 5484601
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>dbj|AP005259.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, PAC
              clone:P0519E02
          Length = 139321

 Score =  159 bits (80), Expect = 1e-35
 Identities = 98/104 (94%)
 Strand = Plus / Plus

                                                                          
Query: 190    agagtactactcgccgttcctcggcatcgagaagggtgccgtcctgcaggaggcccgcgt 249
              |||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||
Sbjct: 118815 agagtactactcgccgttcctcgggatcgagaagggcgccgtcctgcaggaggcccgcgt 118874

                                                          
Query: 250    cttccacgacccgcagcttgatgcgcggcgatgctgccaggtga 293
              |||||||||||||||||| || ||||| || |||||||||||||
Sbjct: 118875 cttccacgacccgcagctcgacgcgcgccgttgctgccaggtga 118918



 Score =  149 bits (75), Expect = 9e-33
 Identities = 108/119 (90%)
 Strand = Plus / Plus

                                                                          
Query: 339    aggtagaggccacagaggtattcttcgctacgaccaagttgtttcagtccaaggatgctg 398
              |||| |||||||||||||| || || || ||||||||||||||||| ||||||||||| |
Sbjct: 119723 aggtggaggccacagaggtcttttttgcgacgaccaagttgtttcaatccaaggatgcag 119782

                                                                         
Query: 399    gacttaggaggatggtgtacctcatgatcaaggaactctcgccgtcagcagatgaggtt 457
              | |||||||| ||||||||||||||||||||||||||||| || |||||||||||||||
Sbjct: 119783 gccttaggagaatggtgtacctcatgatcaaggaactctccccatcagcagatgaggtt 119841



 Score = 79.8 bits (40), Expect = 7e-12
 Identities = 52/56 (92%)
 Strand = Plus / Plus

                                                                      
Query: 288    aggtgatcaccaagcttctatatctgctcaaccagggtgacacctttaccaaggta 343
              |||| ||||||||||| ||||| ||||||||||||||||||||||| |||||||||
Sbjct: 119007 aggtcatcaccaagctcctatacctgctcaaccagggtgacaccttcaccaaggta 119062



 Score = 71.9 bits (36), Expect = 2e-09
 Identities = 48/52 (92%)
 Strand = Plus / Plus

                                                                  
Query: 140    gccatgtcgcagccgctcgtcgtgaagaaggacgacgacttagacgaggaag 191
              |||||| |||||||||||||||||||||||||||||||  | ||||||||||
Sbjct: 118531 gccatggcgcagccgctcgtcgtgaagaaggacgacgatctcgacgaggaag 118582
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>ref|NM_187618.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 2481

 Score = 56.0 bits (28), Expect = 1e-04
 Identities = 187/240 (77%)
 Strand = Plus / Plus

                                                                       
Query: 218 gagaagggtgccgtcctgcaggaggcccgcgtcttccacgacccgcagcttgatgcgcgg 277
           |||||||| ||||| |||||||||||  | |  ||||| || ||||||||||||||  ||
Sbjct: 70  gagaagggagccgttctgcaggaggcaagggctttccatgatccgcagcttgatgccagg 129

                                                                       
Query: 278 cgatgctgccaggtgatcaccaagcttctatatctgctcaaccagggtgacacctttacc 337
              ||||  || || ||||| |||||  | ||| | |||||||| || || || || || 
Sbjct: 130 aagtgctcgcaagtcatcactaagctattgtatttactcaaccaaggggagacattcaca 189

                                                                       
Query: 338 aaggtagaggccacagaggtattcttcgctacgaccaagttgtttcagtccaaggatgct 397
           ||||| ||||||||||| || ||||| ||    || ||| |||| |||||||||||||||
Sbjct: 190 aaggttgaggccacagaagttttctttgcagtaacaaagctgttccagtccaaggatgct 249

                                                                       
Query: 398 ggacttaggaggatggtgtacctcatgatcaaggaactctcgccgtcagcagatgaggtt 457
           || |||||| || |||||||  | |||||||| || || || || ||| |||||||||||
Sbjct: 250 ggtcttaggcggctggtgtatttaatgatcaaagagctttcaccatcatcagatgaggtt 309
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>dbj|AK068454.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013155G01, full
           insert sequence
          Length = 3214

 Score = 56.0 bits (28), Expect = 1e-04
 Identities = 187/240 (77%)
 Strand = Plus / Plus

                                                                       
Query: 218 gagaagggtgccgtcctgcaggaggcccgcgtcttccacgacccgcagcttgatgcgcgg 277
           |||||||| ||||| |||||||||||  | |  ||||| || ||||||||||||||  ||
Sbjct: 250 gagaagggagccgttctgcaggaggcaagggctttccatgatccgcagcttgatgccagg 309

                                                                       
Query: 278 cgatgctgccaggtgatcaccaagcttctatatctgctcaaccagggtgacacctttacc 337
              ||||  || || ||||| |||||  | ||| | |||||||| || || || || || 
Sbjct: 310 aagtgctcgcaagtcatcactaagctattgtatttactcaaccaaggggagacattcaca 369

                                                                       
Query: 338 aaggtagaggccacagaggtattcttcgctacgaccaagttgtttcagtccaaggatgct 397
           ||||| ||||||||||| || ||||| ||    || ||| |||| |||||||||||||||
Sbjct: 370 aaggttgaggccacagaagttttctttgcagtaacaaagctgttccagtccaaggatgct 429

                                                                       
Query: 398 ggacttaggaggatggtgtacctcatgatcaaggaactctcgccgtcagcagatgaggtt 457
           || |||||| || |||||||  | |||||||| || || || || ||| |||||||||||
Sbjct: 430 ggtcttaggcggctggtgtatttaatgatcaaagagctttcaccatcatcagatgaggtt 489
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>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3
          Length = 36102668

 Score = 54.0 bits (27), Expect = 4e-04
 Identities = 66/79 (83%)
 Strand = Plus / Plus

                                                                           
Query: 378     tgtttcagtccaaggatgctggacttaggaggatggtgtacctcatgatcaaggaactct 437
               |||| ||||||||||||||||| |||||| || |||||||  | |||||||| || || |
Sbjct: 6646397 tgttccagtccaaggatgctggtcttaggcggctggtgtatttaatgatcaaagagcttt 6646456

                                  
Query: 438     cgccgtcagcagatgaggt 456
               | || ||| ||||||||||
Sbjct: 6646457 caccatcatcagatgaggt 6646475



 Score = 40.1 bits (20), Expect = 6.2
 Identities = 47/56 (83%)
 Strand = Plus / Plus

                                                                       
Query: 218     gagaagggtgccgtcctgcaggaggcccgcgtcttccacgacccgcagcttgatgc 273
               |||||||| ||||| |||||||||||  | |  ||||| || ||||||||||||||
Sbjct: 6646031 gagaagggagccgttctgcaggaggcaagggctttccatgatccgcagcttgatgc 6646086
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>gb|AC104473.2| Oryza sativa (japonica cultivar-group) chromosome 3 clone OJ1626B05,
             complete sequence
          Length = 127946

 Score = 54.0 bits (27), Expect = 4e-04
 Identities = 66/79 (83%)
 Strand = Plus / Plus

                                                                         
Query: 378   tgtttcagtccaaggatgctggacttaggaggatggtgtacctcatgatcaaggaactct 437
             |||| ||||||||||||||||| |||||| || |||||||  | |||||||| || || |
Sbjct: 31945 tgttccagtccaaggatgctggtcttaggcggctggtgtatttaatgatcaaagagcttt 32004

                                
Query: 438   cgccgtcagcagatgaggt 456
             | || ||| ||||||||||
Sbjct: 32005 caccatcatcagatgaggt 32023



 Score = 40.1 bits (20), Expect = 6.2
 Identities = 47/56 (83%)
 Strand = Plus / Plus

                                                                     
Query: 218   gagaagggtgccgtcctgcaggaggcccgcgtcttccacgacccgcagcttgatgc 273
             |||||||| ||||| |||||||||||  | |  ||||| || ||||||||||||||
Sbjct: 31579 gagaagggagccgttctgcaggaggcaagggctttccatgatccgcagcttgatgc 31634
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>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete
               sequence
          Length = 36192742

 Score = 54.0 bits (27), Expect = 4e-04
 Identities = 66/79 (83%)
 Strand = Plus / Plus

                                                                           
Query: 378     tgtttcagtccaaggatgctggacttaggaggatggtgtacctcatgatcaaggaactct 437
               |||| ||||||||||||||||| |||||| || |||||||  | |||||||| || || |
Sbjct: 6645610 tgttccagtccaaggatgctggtcttaggcggctggtgtatttaatgatcaaagagcttt 6645669

                                  
Query: 438     cgccgtcagcagatgaggt 456
               | || ||| ||||||||||
Sbjct: 6645670 caccatcatcagatgaggt 6645688



 Score = 40.1 bits (20), Expect = 6.2
 Identities = 47/56 (83%)
 Strand = Plus / Plus

                                                                       
Query: 218     gagaagggtgccgtcctgcaggaggcccgcgtcttccacgacccgcagcttgatgc 273
               |||||||| ||||| |||||||||||  | |  ||||| || ||||||||||||||
Sbjct: 6645244 gagaagggagccgttctgcaggaggcaagggctttccatgatccgcagcttgatgc 6645299
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>gb|AC146746.15| Medicago truncatula clone mth2-108p9, complete sequence
          Length = 95118

 Score = 44.1 bits (22), Expect = 0.39
 Identities = 46/54 (85%)
 Strand = Plus / Plus

                                                                   
Query: 404   aggaggatggtgtacctcatgatcaaggaactctcgccgtcagcagatgaggtt 457
             ||||| ||||||||||| || || ||||||||||| || ||||| || ||||||
Sbjct: 25232 aggagaatggtgtacctgattataaaggaactctccccctcagcggacgaggtt 25285
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>gb|AY123972.1| Arthrobacter sp. BP2 cyclohexanone oxidation gene cluster, partial
            sequence
          Length = 8975

 Score = 44.1 bits (22), Expect = 0.39
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                  
Query: 224  ggtgccgtcctgcaggaggccc 245
            ||||||||||||||||||||||
Sbjct: 2711 ggtgccgtcctgcaggaggccc 2690
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>dbj|AB039951.1| Bacillus subtilis yuxH, yuzC, degQ, comQ, comX, comP, comA, yuxO
           genes, partial and complete cds
          Length = 6114

 Score = 44.1 bits (22), Expect = 0.39
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                 
Query: 38  ctcgcgggagctctcgcgccgc 59
           ||||||||||||||||||||||
Sbjct: 516 ctcgcgggagctctcgcgccgc 495
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>dbj|AB010576.1| Bacillus subtilis ComX, ComQ and DegQ genes, complete cds
          Length = 2517

 Score = 44.1 bits (22), Expect = 0.39
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                 
Query: 38  ctcgcgggagctctcgcgccgc 59
           ||||||||||||||||||||||
Sbjct: 516 ctcgcgggagctctcgcgccgc 495
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>ref|XM_472252.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 1806

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 54  cgccgccccgctccgccgccg 74
           |||||||||||||||||||||
Sbjct: 180 cgccgccccgctccgccgccg 160
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>gb|AE009089.1| Agrobacterium tumefaciens str. C58 circular chromosome, section 115
            of 256 of the complete sequence
          Length = 10144

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 27/29 (93%)
 Strand = Plus / Minus

                                         
Query: 247  cgtcttccacgacccgcagcttgatgcgc 275
            |||||||| ||||| ||||||||||||||
Sbjct: 1595 cgtcttccgcgacctgcagcttgatgcgc 1567
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>gb|AY519500.1| Gallus gallus CNR/Pcdh-alpha gene cluster, complete sequence
          Length = 187517

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 59     ccccgctccgccgccgttctc 79
              |||||||||||||||||||||
Sbjct: 105985 ccccgctccgccgccgttctc 105965
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>emb|CR626927.1| Bacteroides fragilis NCTC 9343, complete genome
          Length = 5205140

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                    
Query: 233     ctgcaggaggcccgcgtcttc 253
               |||||||||||||||||||||
Sbjct: 4382506 ctgcaggaggcccgcgtcttc 4382526
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>emb|AL731619.3|OSJN00267 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0084N21,
            complete sequence
          Length = 143093

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 54   cgccgccccgctccgccgccg 74
            |||||||||||||||||||||
Sbjct: 6906 cgccgccccgctccgccgccg 6886
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>gb|AE007869.1| Agrobacterium tumefaciens str. C58, complete genome
          Length = 2841581

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 27/29 (93%)
 Strand = Plus / Minus

                                            
Query: 247     cgtcttccacgacccgcagcttgatgcgc 275
               |||||||| ||||| ||||||||||||||
Sbjct: 1257267 cgtcttccgcgacctgcagcttgatgcgc 1257239
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>ref|NG_004818.1| Gallus gallus cadherin-related neuronal receptor 10 pseudogene (CNRV10)
          Length = 98944

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 59    ccccgctccgccgccgttctc 79
             |||||||||||||||||||||
Sbjct: 27526 ccccgctccgccgccgttctc 27506
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>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete
                sequence
          Length = 35498469

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                     
Query: 54       cgccgccccgctccgccgccg 74
                |||||||||||||||||||||
Sbjct: 18790996 cgccgccccgctccgccgccg 18790976
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>emb|AL662977.3|OSJN00176 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0072D21,
              complete sequence
          Length = 160456

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 54     cgccgccccgctccgccgccg 74
              |||||||||||||||||||||
Sbjct: 140159 cgccgccccgctccgccgccg 140139
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>emb|AL646052.1| Ralstonia solanacearum GMI1000 chromosome complete sequence
          Length = 3716413

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                       
Query: 80     gcggcatagcggtcgacccgggcgc 104
              ||||||||||||||||| |||||||
Sbjct: 362798 gcggcatagcggtcgacgcgggcgc 362774
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>gb|CP000143.1| Rhodobacter sphaeroides 2.4.1 chromosome 1, complete genome
          Length = 3188609

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 229    cgtcctgcaggaggcccgcg 248
              ||||||||||||||||||||
Sbjct: 506652 cgtcctgcaggaggcccgcg 506671
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>gb|AC128644.4| Oryza sativa (japonica cultivar-group) chromosome 11 clone OSJNBb0009F15,
              complete sequence
          Length = 142289

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 63     gctccgccgccgttctcgcggcat 86
              |||||||||||| |||||||||||
Sbjct: 112345 gctccgccgccgctctcgcggcat 112322
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>emb|AL591785.1|SME591785 Sinorhizobium meliloti 1021 complete chromosome; segment 4/12
          Length = 286550

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 215   atcgagaagggtgccgtcct 234
             ||||||||||||||||||||
Sbjct: 23174 atcgagaagggtgccgtcct 23155
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>gb|AC156498.2| Mus musculus BAC clone RP24-300J13 from chromosome 12, complete
             sequence
          Length = 175716

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 339   aggtagaggccacagaggtattct 362
             |||||||||||||||||| |||||
Sbjct: 98490 aggtagaggccacagaggaattct 98513
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>gb|AC151605.2| Emiliania huxleyi clone JGIACCU-13A3, complete sequence
          Length = 36153

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 51    tcgcgccgccccgctccgcc 70
             ||||||||||||||||||||
Sbjct: 31314 tcgcgccgccccgctccgcc 31295
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>gb|U65510.1|RRU65510 Rhodospirillum rubrum alkyl hydroperoxide reductase (ahpC) gene,
             partial cds; CooM (cooM), CooK (cooK), CooL (cooL), CooX
             (cooX), CooU (cooU), CooH (cooH), iron sulfur protein
             (cooF), carbon monoxide dehydrogenase (cooS), CooC (cooC),
             CooT (cooT), CooJ (cooJ), putative transcriptional
             activator; similar to cAMP-receptor (CAP, CRP) protein:
             PIR Accession Number A26049; similar to fnr (nirR) gene
             product encoded by GenBank Accession Number J01608;
             aspartic acid-rich C-terminus similar to acidic region of
             HMG (high mobility group) protei (cooA), and
             nicotinate-nucleotide pyrophosphorylase (nadC) genes,
             complete cds; L-aspartate oxidase (nadB) gene, partial
             cds; and unknown gene
          Length = 16259

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 53    gcgccgccccgctccgccgc 72
             ||||||||||||||||||||
Sbjct: 15846 gcgccgccccgctccgccgc 15827
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>gb|CP000230.1| Rhodospirillum rubrum ATCC 11170, complete genome
          Length = 4352825

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 53      gcgccgccccgctccgccgc 72
               ||||||||||||||||||||
Sbjct: 1691662 gcgccgccccgctccgccgc 1691643
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>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11, complete
               sequence
          Length = 28386948

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                       
Query: 63      gctccgccgccgttctcgcggcat 86
               |||||||||||| |||||||||||
Sbjct: 4460982 gctccgccgccgctctcgcggcat 4460959
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>gb|CP000252.1| Syntrophus aciditrophicus SB, complete genome
          Length = 3179300

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 206     ttcctcggcatcgagaaggg 225
               ||||||||||||||||||||
Sbjct: 1659149 ttcctcggcatcgagaaggg 1659168
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>gb|CP000251.1| Anaeromyxobacter dehalogenans 2CP-C, complete genome
          Length = 5013479

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 55      gccgccccgctccgccgccg 74
               ||||||||||||||||||||
Sbjct: 2744303 gccgccccgctccgccgccg 2744322
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>ref|XM_316442.2| Anopheles gambiae str. PEST ENSANGP00000021115
           (ENSANGG00000018626), partial mRNA
          Length = 1731

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 256 cgacccgcagcttgatgcgc 275
           ||||||||||||||||||||
Sbjct: 931 cgacccgcagcttgatgcgc 912
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>ref|XM_313144.2| Anopheles gambiae str. PEST ENSANGP00000013219
           (ENSANGG00000010730), partial mRNA
          Length = 1333

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                   
Query: 215 atcgagaagggtgccgtcctgcag 238
           ||||| ||||||||||||||||||
Sbjct: 657 atcgataagggtgccgtcctgcag 634
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>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence
          Length = 28369397

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                       
Query: 63      gctccgccgccgttctcgcggcat 86
               |||||||||||| |||||||||||
Sbjct: 4469676 gctccgccgccgctctcgcggcat 4469653


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 2,729,374
Number of Sequences: 3902068
Number of extensions: 2729374
Number of successful extensions: 51338
Number of sequences better than 10.0: 36
Number of HSP's better than 10.0 without gapping: 36
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 50702
Number of HSP's gapped (non-prelim): 631
length of query: 457
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 435
effective length of database: 17,147,199,772
effective search space: 7459031900820
effective search space used: 7459031900820
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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