>ref|XM_465561.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 3440

 Score =  153 bits (77), Expect = 6e-34
 Identities = 275/340 (80%), Gaps = 12/340 (3%)
 Strand = Plus / Plus

                                                                       
Query: 76  gccgctgtccggcgccgcggcgccccggccggcgagatgaggagccccttccggctaccc 135
           ||||| ||||| ||||||||| | |||||||||| ||||||   ||||| | |||  | |
Sbjct: 106 gccgccgtccgccgccgcggcactccggccggcgggatgag---cccctccgggcggctc 162

                                                                       
Query: 136 gccgcccccttcgtatccgcgctcgtcctcctcatgctcgctctggttccgtccccggag 195
            ||||||||||||| | | | |||||||| ||  ||||||||||||| ||||| ||||||
Sbjct: 163 cccgcccccttcgtcttccccctcgtcctgctgctgctcgctctggtgccgtcaccggag 222

                                                                       
Query: 196 gcggccgagaccaccacaccggggacccggacgcgcaagctcggccccggcggctcttcc 255
           ||||||||| ||||    |||||||| |||||||||||| |||||  || ||      ||
Sbjct: 223 gcggccgagtccacg---ccggggacgcggacgcgcaagatcggcggcgccg------cc 273

                                                                       
Query: 256 tcggtgttctcgctcttcaacctcaagccccagagcaagttctggacggaatcggtcatg 315
           |||||||||||||||||||||||||||||||||| |||||||||| |||| || ||||| 
Sbjct: 274 tcggtgttctcgctcttcaacctcaagccccagaacaagttctggtcggagtccgtcatc 333

                                                                       
Query: 316 cggacagagttcgatgacctggtgggctcgaagtcaagggactccatcaacgtggggctt 375
           || || || ||||||||| ||| |||||| |  ||  ||||||||| |||   || ||| 
Sbjct: 334 cgcacggaattcgatgacttggagggctcaacatcgcgggactccagcaagaaggcgctg 393

                                                   
Query: 376 ctgaacttcacaagagccggtaatgttgcaaactatatga 415
           || |||||||| ||||| |||||| |||| ||||||||||
Sbjct: 394 ctcaacttcactagagctggtaatattgccaactatatga 433

>dbj|AK066401.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013063N21, full
           insert sequence
          Length = 3439

 Score =  145 bits (73), Expect = 1e-31
 Identities = 274/340 (80%), Gaps = 12/340 (3%)
 Strand = Plus / Plus

                                                                       
Query: 76  gccgctgtccggcgccgcggcgccccggccggcgagatgaggagccccttccggctaccc 135
           ||||| ||||| ||||||||| | |||||||||| ||||||   ||||| | |||  | |
Sbjct: 106 gccgccgtccgccgccgcggcactccggccggcgggatgag---cccctccgggcggctc 162

                                                                       
Query: 136 gccgcccccttcgtatccgcgctcgtcctcctcatgctcgctctggttccgtccccggag 195
            ||||||||||||| | | | |||||||| ||  || |||||||||| ||||| ||||||
Sbjct: 163 cccgcccccttcgtcttccccctcgtcctgctgctgttcgctctggtgccgtcaccggag 222

                                                                       
Query: 196 gcggccgagaccaccacaccggggacccggacgcgcaagctcggccccggcggctcttcc 255
           ||||||||| ||||    |||||||| |||||||||||| |||||  || ||      ||
Sbjct: 223 gcggccgagtccacg---ccggggacgcggacgcgcaagatcggcggcgccg------cc 273

                                                                       
Query: 256 tcggtgttctcgctcttcaacctcaagccccagagcaagttctggacggaatcggtcatg 315
           |||||||||||||||||||||||||||||||||| |||||||||| |||| || ||||| 
Sbjct: 274 tcggtgttctcgctcttcaacctcaagccccagaacaagttctggtcggagtccgtcatc 333

                                                                       
Query: 316 cggacagagttcgatgacctggtgggctcgaagtcaagggactccatcaacgtggggctt 375
           || || || ||||||||| ||| |||||| |  ||  ||||||||| |||   || ||| 
Sbjct: 334 cgcacggaattcgatgacttggagggctcaacatcgcgggactccagcaagaaggcgctg 393

                                                   
Query: 376 ctgaacttcacaagagccggtaatgttgcaaactatatga 415
           || |||||||| ||||| |||||| |||| ||||||||||
Sbjct: 394 ctcaacttcactagagctggtaatattgccaactatatga 433

>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete
                sequence
          Length = 35954743

 Score = 91.7 bits (46), Expect = 2e-15
 Identities = 110/131 (83%), Gaps = 9/131 (6%)
 Strand = Plus / Plus

                                                                            
Query: 184      ccgtccccggaggcggccgagaccaccacaccggggacccggacgcgcaagctcggcccc 243
                ||||| ||||||||||||||| ||||    |||||||| |||||||||||| |||||  |
Sbjct: 15936110 ccgtcaccggaggcggccgagtccacg---ccggggacgcggacgcgcaagatcggcggc 15936166

                                                                            
Query: 244      ggcggctcttcctcggtgttctcgctcttcaacctcaagccccagagcaagttctggacg 303
                | ||      |||||||||||||||||||||||||||||||||||| |||||||||| ||
Sbjct: 15936167 gccg------cctcggtgttctcgctcttcaacctcaagccccagaacaagttctggtcg 15936220

                           
Query: 304      gaatcggtcat 314
                || || |||||
Sbjct: 15936221 gagtccgtcat 15936231



 Score = 42.1 bits (21), Expect = 1.4
 Identities = 86/107 (80%), Gaps = 3/107 (2%)
 Strand = Plus / Plus

                                                                            
Query: 76       gccgctgtccggcgccgcggcgccccggccggcgagatgaggagccccttccggctaccc 135
                ||||| ||||| ||||||||| | |||||||||| ||||||   ||||| | |||  | |
Sbjct: 15935906 gccgccgtccgccgccgcggcactccggccggcgggatgag---cccctccgggcggctc 15935962

                                                               
Query: 136      gccgcccccttcgtatccgcgctcgtcctcctcatgctcgctctggt 182
                 ||||||||||||| | | | |||||||| ||  |||||||||||||
Sbjct: 15935963 cccgcccccttcgtcttccccctcgtcctgctgctgctcgctctggt 15936009

>dbj|AP004131.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC
             clone:OJ1057_F01
          Length = 120026

 Score = 91.7 bits (46), Expect = 2e-15
 Identities = 110/131 (83%), Gaps = 9/131 (6%)
 Strand = Plus / Plus

                                                                         
Query: 184   ccgtccccggaggcggccgagaccaccacaccggggacccggacgcgcaagctcggcccc 243
             ||||| ||||||||||||||| ||||    |||||||| |||||||||||| |||||  |
Sbjct: 79785 ccgtcaccggaggcggccgagtccacg---ccggggacgcggacgcgcaagatcggcggc 79841

                                                                         
Query: 244   ggcggctcttcctcggtgttctcgctcttcaacctcaagccccagagcaagttctggacg 303
             | ||      |||||||||||||||||||||||||||||||||||| |||||||||| ||
Sbjct: 79842 gccg------cctcggtgttctcgctcttcaacctcaagccccagaacaagttctggtcg 79895

                        
Query: 304   gaatcggtcat 314
             || || |||||
Sbjct: 79896 gagtccgtcat 79906



 Score = 42.1 bits (21), Expect = 1.4
 Identities = 86/107 (80%), Gaps = 3/107 (2%)
 Strand = Plus / Plus

                                                                         
Query: 76    gccgctgtccggcgccgcggcgccccggccggcgagatgaggagccccttccggctaccc 135
             ||||| ||||| ||||||||| | |||||||||| ||||||   ||||| | |||  | |
Sbjct: 79581 gccgccgtccgccgccgcggcactccggccggcgggatgag---cccctccgggcggctc 79637

                                                            
Query: 136   gccgcccccttcgtatccgcgctcgtcctcctcatgctcgctctggt 182
              ||||||||||||| | | | |||||||| ||  |||||||||||||
Sbjct: 79638 cccgcccccttcgtcttccccctcgtcctgctgctgctcgctctggt 79684

>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete
                sequence
          Length = 29644043

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                         
Query: 87       gcgccgcggcgccccggccggcgag 111
                |||||||||||||| ||||||||||
Sbjct: 28392563 gcgccgcggcgcccgggccggcgag 28392539

>dbj|AP004300.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, PAC
              clone:P0470D12
          Length = 157248

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                       
Query: 87     gcgccgcggcgccccggccggcgag 111
              |||||||||||||| ||||||||||
Sbjct: 118126 gcgccgcggcgcccgggccggcgag 118102

>gb|CP000143.1| Rhodobacter sphaeroides 2.4.1 chromosome 1, complete genome
          Length = 3188609

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 228     gcgcaagctcggccccggcg 247
               ||||||||||||||||||||
Sbjct: 3025107 gcgcaagctcggccccggcg 3025126

>ref|XM_957564.1| Neurospora crassa OR74A hypothetical protein ( (AF401237)
            cystathionine beta-lyase [Neurospora crassa OR74A] )
            (NCU07987.1) partial mRNA
          Length = 1374

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 193  gaggcggccgagaccaccac 212
            ||||||||||||||||||||
Sbjct: 1333 gaggcggccgagaccaccac 1352

>ref|XM_328692.1| Neurospora crassa OR74A hypothetical protein ( (AF401237)
            cystathionine beta-lyase [Neurospora crassa OR74A] )
            (NCU07987.1) partial mRNA
          Length = 1374

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 193  gaggcggccgagaccaccac 212
            ||||||||||||||||||||
Sbjct: 1333 gaggcggccgagaccaccac 1352

>gb|CP000115.1| Nitrobacter winogradskyi Nb-255, complete genome
          Length = 3402093

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 78      cgctgtccggcgccgcggcg 97
               ||||||||||||||||||||
Sbjct: 2905520 cgctgtccggcgccgcggcg 2905501

>ref|XM_534089.2| PREDICTED: Canis familiaris similar to HMT1 hnRNP
           methyltransferase-like 3, transcript variant 1
           (LOC476887), mRNA
          Length = 1864

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                   
Query: 83  tccggcgccgcggcgccccggccg 106
           |||| |||||||||||||||||||
Sbjct: 167 tccgccgccgcggcgccccggccg 144

>emb|AL356440.11| Human DNA sequence from clone RP1-299F11 on chromosome 11 Contains part
             of a gene similar to D.melanogaster protein (CG14464),
             STSs, GSSs and a CpG island, complete sequence
          Length = 54446

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 182   ttccgtccccggaggcggcc 201
             ||||||||||||||||||||
Sbjct: 43010 ttccgtccccggaggcggcc 42991

>gb|AF401237.1|AF401237 Neurospora crassa cystathionine beta-lyase (met-2) gene, complete cds
          Length = 2875

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 193  gaggcggccgagaccaccac 212
            ||||||||||||||||||||
Sbjct: 2638 gaggcggccgagaccaccac 2657

>dbj|BA000030.2| Streptomyces avermitilis MA-4680 genomic DNA, complete genome
          Length = 9025608

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 153     cgcgctcgtcctcctcatgc 172
               ||||||||||||||||||||
Sbjct: 7474005 cgcgctcgtcctcctcatgc 7473986

>gb|CP000251.1| Anaeromyxobacter dehalogenans 2CP-C, complete genome
          Length = 5013479

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 87      gcgccgcggcgccccggccg 106
               ||||||||||||||||||||
Sbjct: 1342244 gcgccgcggcgccccggccg 1342225



 Score = 40.1 bits (20), Expect = 5.7
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 85    cggcgccgcggcgccccggccggc 108
             |||||||||||||||| |||||||
Sbjct: 77505 cggcgccgcggcgcccgggccggc 77528

>gb|AE016825.1| Chromobacterium violaceum ATCC 12472, complete genome
          Length = 4751080

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 72      cgcagccgctgtccggcgcc 91
               ||||||||||||||||||||
Sbjct: 2404025 cgcagccgctgtccggcgcc 2404006


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 2,592,539
Number of Sequences: 3902068
Number of extensions: 2592539
Number of successful extensions: 50636
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 16
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 49887
Number of HSP's gapped (non-prelim): 745
length of query: 424
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 402
effective length of database: 17,147,199,772
effective search space: 6893174308344
effective search space used: 6893174308344
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)