Clone Name | bastl32h11 |
---|---|
Clone Library Name | barley_pub |
>gb|AC103740.2| Homo sapiens chromosome 15, clone RP11-1069G10, complete sequence Length = 182071 Score = 46.1 bits (23), Expect = 0.11 Identities = 26/27 (96%) Strand = Plus / Minus Query: 7 aatgtcttcgtcttcccctcaccagac 33 ||||||||| ||||||||||||||||| Sbjct: 107177 aatgtcttcttcttcccctcaccagac 107151
>gb|AC018727.10| Oryza sativa chromosome 10 BAC OSJNBa0056G17 genomic sequence, complete sequence Length = 139999 Score = 44.1 bits (22), Expect = 0.42 Identities = 22/22 (100%) Strand = Plus / Plus Query: 441 gctgctgctgctcgcgctcgcg 462 |||||||||||||||||||||| Sbjct: 118851 gctgctgctgctcgcgctcgcg 118872
>dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 10, complete sequence Length = 22685906 Score = 44.1 bits (22), Expect = 0.42 Identities = 22/22 (100%) Strand = Plus / Plus Query: 441 gctgctgctgctcgcgctcgcg 462 |||||||||||||||||||||| Sbjct: 22664182 gctgctgctgctcgcgctcgcg 22664203 Score = 42.1 bits (21), Expect = 1.7 Identities = 21/21 (100%) Strand = Plus / Minus Query: 261 cacgccgccgccgccgtttca 281 ||||||||||||||||||||| Sbjct: 16659804 cacgccgccgccgccgtttca 16659784 Score = 40.1 bits (20), Expect = 6.6 Identities = 23/24 (95%) Strand = Plus / Plus Query: 429 cggcgcgcgccggctgctgctgct 452 ||||||||||| |||||||||||| Sbjct: 9822537 cggcgcgcgcctgctgctgctgct 9822560
>gb|CP000251.1| Anaeromyxobacter dehalogenans 2CP-C, complete genome Length = 5013479 Score = 44.1 bits (22), Expect = 0.42 Identities = 31/34 (91%) Strand = Plus / Plus Query: 427 gccggcgcgcgccggctgctgctgctcgcgctcg 460 ||||||||| || ||||| ||||||||||||||| Sbjct: 1325248 gccggcgcgggcgggctggtgctgctcgcgctcg 1325281 Score = 42.1 bits (21), Expect = 1.7 Identities = 24/25 (96%) Strand = Plus / Plus Query: 436 cgccggctgctgctgctcgcgctcg 460 |||||||||||||| |||||||||| Sbjct: 616941 cgccggctgctgctcctcgcgctcg 616965 Score = 40.1 bits (20), Expect = 6.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 422 gcggagccggcgcgcgccgg 441 |||||||||||||||||||| Sbjct: 3973632 gcggagccggcgcgcgccgg 3973613 Score = 40.1 bits (20), Expect = 6.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 449 tgctcgcgctcgcgccctcg 468 |||||||||||||||||||| Sbjct: 3593837 tgctcgcgctcgcgccctcg 3593856
>gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome 10, complete sequence Length = 22698374 Score = 44.1 bits (22), Expect = 0.42 Identities = 22/22 (100%) Strand = Plus / Plus Query: 441 gctgctgctgctcgcgctcgcg 462 |||||||||||||||||||||| Sbjct: 22676650 gctgctgctgctcgcgctcgcg 22676671 Score = 42.1 bits (21), Expect = 1.7 Identities = 21/21 (100%) Strand = Plus / Minus Query: 261 cacgccgccgccgccgtttca 281 ||||||||||||||||||||| Sbjct: 16668844 cacgccgccgccgccgtttca 16668824 Score = 40.1 bits (20), Expect = 6.6 Identities = 23/24 (95%) Strand = Plus / Plus Query: 429 cggcgcgcgccggctgctgctgct 452 ||||||||||| |||||||||||| Sbjct: 9828576 cggcgcgcgcctgctgctgctgct 9828599
>gb|AC167718.4| Culex pipiens quinquefasciatus, clone Culex pipiens quinquefasciatus-3940130D9, complete sequence Length = 117683 Score = 42.1 bits (21), Expect = 1.7 Identities = 21/21 (100%) Strand = Plus / Plus Query: 440 ggctgctgctgctcgcgctcg 460 ||||||||||||||||||||| Sbjct: 103532 ggctgctgctgctcgcgctcg 103552
>ref|XM_513337.1| PREDICTED: Pan troglodytes similar to hypothetical protein FLJ12666 (LOC456775), mRNA Length = 890 Score = 42.1 bits (21), Expect = 1.7 Identities = 21/21 (100%) Strand = Plus / Plus Query: 264 gccgccgccgccgtttcagac 284 ||||||||||||||||||||| Sbjct: 230 gccgccgccgccgtttcagac 250
>ref|XM_472635.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 528 Score = 42.1 bits (21), Expect = 1.7 Identities = 24/25 (96%) Strand = Plus / Plus Query: 433 gcgcgccggctgctgctgctcgcgc 457 |||||||| |||||||||||||||| Sbjct: 329 gcgcgccgcctgctgctgctcgcgc 353
>gb|AC111275.4| Rattus norvegicus 4 BAC CH230-49L22 (Children's Hospital Oakland Research Institute) complete sequence Length = 227595 Score = 42.1 bits (21), Expect = 1.7 Identities = 21/21 (100%) Strand = Plus / Plus Query: 10 gtcttcgtcttcccctcacca 30 ||||||||||||||||||||| Sbjct: 82324 gtcttcgtcttcccctcacca 82344
>gb|BC068402.1| Danio rerio fragile X mental retardation, autosomal homolog 1, mRNA (cDNA clone IMAGE:6962611), partial cds Length = 2813 Score = 42.1 bits (21), Expect = 1.7 Identities = 21/21 (100%) Strand = Plus / Plus Query: 264 gccgccgccgccgtttcagac 284 ||||||||||||||||||||| Sbjct: 1702 gccgccgccgccgtttcagac 1722
>ref|NM_024595.1| Homo sapiens chromosome 1 open reading frame 108 (C1orf108), mRNA Length = 1968 Score = 42.1 bits (21), Expect = 1.7 Identities = 21/21 (100%) Strand = Plus / Plus Query: 264 gccgccgccgccgtttcagac 284 ||||||||||||||||||||| Sbjct: 268 gccgccgccgccgtttcagac 288
>emb|AL645568.9| Human DNA sequence from clone RP11-296O14 on chromosome 1 Contains a pseudogene similar to part of ribosomal protein L26 (RPL26), a novel pseudogene and a novel gene, complete sequence Length = 136031 Score = 42.1 bits (21), Expect = 1.7 Identities = 21/21 (100%) Strand = Plus / Minus Query: 435 gcgccggctgctgctgctcgc 455 ||||||||||||||||||||| Sbjct: 73544 gcgccggctgctgctgctcgc 73524
>emb|AL606465.21| Human DNA sequence from clone RP11-781D11 on chromosome 1 Contains a translation initiation factor SUI1 (SUI1) pseudogene, the gene for a novel protein (FLJ12666, FLJ44274), the NDUFS5 gene for 15kDA NADH dehydrogenase (ubiquinone) Fe-S protein 5 (NADH-coenzyme Q reductase) and a CpG island, complete sequence Length = 116103 Score = 42.1 bits (21), Expect = 1.7 Identities = 21/21 (100%) Strand = Plus / Plus Query: 264 gccgccgccgccgtttcagac 284 ||||||||||||||||||||| Sbjct: 36000 gccgccgccgccgtttcagac 36020
>gb|AC167662.6| Culex pipiens quinquefasciatus, clone Culex pipiens quinquefasciatus-3940141D9, complete sequence Length = 117679 Score = 42.1 bits (21), Expect = 1.7 Identities = 21/21 (100%) Strand = Plus / Minus Query: 440 ggctgctgctgctcgcgctcg 460 ||||||||||||||||||||| Sbjct: 14152 ggctgctgctgctcgcgctcg 14132
>ref|XM_967948.1| PREDICTED: Tribolium castaneum hypothetical protein LOC661809 (LOC661809), mRNA Length = 4788 Score = 42.1 bits (21), Expect = 1.7 Identities = 27/29 (93%) Strand = Plus / Minus Query: 116 gcttttttcctcgacgggctagctcttct 144 ||||||||||||||| |||| |||||||| Sbjct: 249 gcttttttcctcgaccggcttgctcttct 221
>emb|BX572603.1| Rhodopseudomonas palustris CGA009 complete genome; segment 11/16 Length = 349635 Score = 42.1 bits (21), Expect = 1.7 Identities = 21/21 (100%) Strand = Plus / Minus Query: 260 acacgccgccgccgccgtttc 280 ||||||||||||||||||||| Sbjct: 131332 acacgccgccgccgccgtttc 131312
>emb|AL731606.2|OSJN00249 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0058G03, complete sequence Length = 46422 Score = 42.1 bits (21), Expect = 1.7 Identities = 24/25 (96%) Strand = Plus / Plus Query: 433 gcgcgccggctgctgctgctcgcgc 457 |||||||| |||||||||||||||| Sbjct: 18286 gcgcgccgcctgctgctgctcgcgc 18310
>gb|AC022457.8| Oryza sativa chromosome 10 BAC OSJNBa0006L06 genomic sequence, complete sequence Length = 162339 Score = 42.1 bits (21), Expect = 1.7 Identities = 21/21 (100%) Strand = Plus / Minus Query: 261 cacgccgccgccgccgtttca 281 ||||||||||||||||||||| Sbjct: 4321 cacgccgccgccgccgtttca 4301
>dbj|AK126262.1| Homo sapiens cDNA FLJ44274 fis, clone TOVAR2001730 Length = 1924 Score = 42.1 bits (21), Expect = 1.7 Identities = 21/21 (100%) Strand = Plus / Plus Query: 264 gccgccgccgccgtttcagac 284 ||||||||||||||||||||| Sbjct: 225 gccgccgccgccgtttcagac 245
>gb|AE006031.1| Caulobacter crescentus CB15 section 357 of 359 of the complete genome Length = 10388 Score = 42.1 bits (21), Expect = 1.7 Identities = 24/25 (96%) Strand = Plus / Plus Query: 459 cgcgccctcgccgctgtggcggcgg 483 |||||||||||||| |||||||||| Sbjct: 5368 cgcgccctcgccgccgtggcggcgg 5392
>dbj|AK124799.1| Homo sapiens cDNA FLJ42809 fis, clone BRCAN2007144 Length = 1888 Score = 42.1 bits (21), Expect = 1.7 Identities = 21/21 (100%) Strand = Plus / Plus Query: 264 gccgccgccgccgtttcagac 284 ||||||||||||||||||||| Sbjct: 189 gccgccgccgccgtttcagac 209
>dbj|AK022728.1| Homo sapiens cDNA FLJ12666 fis, clone NT2RM4002256 Length = 1968 Score = 42.1 bits (21), Expect = 1.7 Identities = 21/21 (100%) Strand = Plus / Plus Query: 264 gccgccgccgccgtttcagac 284 ||||||||||||||||||||| Sbjct: 268 gccgccgccgccgtttcagac 288
>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete sequence Length = 35498469 Score = 42.1 bits (21), Expect = 1.7 Identities = 24/25 (96%) Strand = Plus / Plus Query: 433 gcgcgccggctgctgctgctcgcgc 457 |||||||| |||||||||||||||| Sbjct: 22119805 gcgcgccgcctgctgctgctcgcgc 22119829 Score = 40.1 bits (20), Expect = 6.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 445 ctgctgctcgcgctcgcgcc 464 |||||||||||||||||||| Sbjct: 32499569 ctgctgctcgcgctcgcgcc 32499550
>dbj|AK223276.1| Homo sapiens mRNA for hypothetical protein FLJ12666 variant, clone: STM07463 Length = 2514 Score = 42.1 bits (21), Expect = 1.7 Identities = 21/21 (100%) Strand = Plus / Plus Query: 264 gccgccgccgccgtttcagac 284 ||||||||||||||||||||| Sbjct: 225 gccgccgccgccgtttcagac 245
>gb|AC022077.20| Homo sapiens 3 BAC RP11-34I16 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 158176 Score = 42.1 bits (21), Expect = 1.7 Identities = 24/25 (96%) Strand = Plus / Plus Query: 28 ccagacttccggctcactccccctc 52 |||||||||| |||||||||||||| Sbjct: 22044 ccagacttcctgctcactccccctc 22068
>gb|AC157500.1| Oryza sativa (japonica cultivar-group) BAC clone OSJNBb0056O04, from chromosome 4, complete sequence Length = 90825 Score = 42.1 bits (21), Expect = 1.7 Identities = 24/25 (96%) Strand = Plus / Plus Query: 433 gcgcgccggctgctgctgctcgcgc 457 |||||||| |||||||||||||||| Sbjct: 44310 gcgcgccgcctgctgctgctcgcgc 44334
>gb|BC001498.2| Homo sapiens chromosome 1 open reading frame 108, mRNA (cDNA clone IMAGE:3049652) Length = 1942 Score = 42.1 bits (21), Expect = 1.7 Identities = 21/21 (100%) Strand = Plus / Plus Query: 264 gccgccgccgccgtttcagac 284 ||||||||||||||||||||| Sbjct: 224 gccgccgccgccgtttcagac 244
>dbj|D50308.1| Lysobacter lactamgenus DNA for alpha-aminoadipyl-cysteinyl-valine synthetase, complete cds Length = 11401 Score = 42.1 bits (21), Expect = 1.7 Identities = 21/21 (100%) Strand = Plus / Minus Query: 465 ctcgccgctgtggcggcggcg 485 ||||||||||||||||||||| Sbjct: 8658 ctcgccgctgtggcggcggcg 8638
>ref|XM_511928.1| PREDICTED: Pan troglodytes LOC455177 (LOC455177), mRNA Length = 2472 Score = 40.1 bits (20), Expect = 6.6 Identities = 26/28 (92%) Strand = Plus / Minus Query: 95 ccgccgccgcccgcttcttcggcttttt 122 ||||||||||| ||| |||||||||||| Sbjct: 379 ccgccgccgccggctccttcggcttttt 352
>ref|XM_474058.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 906 Score = 40.1 bits (20), Expect = 6.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 445 ctgctgctcgcgctcgcgcc 464 |||||||||||||||||||| Sbjct: 603 ctgctgctcgcgctcgcgcc 584
>ref|XM_465912.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1305 Score = 40.1 bits (20), Expect = 6.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 467 cgccgctgtggcggcggcgg 486 |||||||||||||||||||| Sbjct: 721 cgccgctgtggcggcggcgg 740
>ref|XM_465137.1| Oryza sativa (japonica cultivar-group), mRNA Length = 252 Score = 40.1 bits (20), Expect = 6.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 261 cacgccgccgccgccgtttc 280 |||||||||||||||||||| Sbjct: 216 cacgccgccgccgccgtttc 197
>ref|XM_527845.1| PREDICTED: Pan troglodytes similar to CCAAT displacement protein isoform a; cut homeobox; cut-like 1; cut homolog; cut (Drosophila)-like 1 (CCAAT displacement protein) (LOC472471), mRNA Length = 8790 Score = 40.1 bits (20), Expect = 6.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 98 ccgccgcccgcttcttcggc 117 |||||||||||||||||||| Sbjct: 6134 ccgccgcccgcttcttcggc 6115
>ref|NM_195898.1| Oryza sativa (japonica cultivar-group) hypothetical protein (OSJNBa0045C13.7), mRNA Length = 1386 Score = 40.1 bits (20), Expect = 6.6 Identities = 23/24 (95%) Strand = Plus / Plus Query: 429 cggcgcgcgccggctgctgctgct 452 ||||||||||| |||||||||||| Sbjct: 322 cggcgcgcgcctgctgctgctgct 345
>ref|XM_476871.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1818 Score = 40.1 bits (20), Expect = 6.6 Identities = 29/32 (90%) Strand = Plus / Plus Query: 245 tcctcccctgctcagacacgccgccgccgccg 276 |||||| |||||| |||| ||||||||||||| Sbjct: 1163 tcctccgctgctccgacaagccgccgccgccg 1194
>gb|CP000010.1| Burkholderia mallei ATCC 23344 chromosome 1, complete sequence Length = 3510148 Score = 40.1 bits (20), Expect = 6.6 Identities = 23/24 (95%) Strand = Plus / Minus Query: 428 ccggcgcgcgccggctgctgctgc 451 ||||| |||||||||||||||||| Sbjct: 3265637 ccggcacgcgccggctgctgctgc 3265614 Score = 40.1 bits (20), Expect = 6.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 424 ggagccggcgcgcgccggct 443 |||||||||||||||||||| Sbjct: 1931901 ggagccggcgcgcgccggct 1931920
>gb|AY313901.1| Zea mays yabby14 protein mRNA, complete cds Length = 1267 Score = 40.1 bits (20), Expect = 6.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 467 cgccgctgtggcggcggcgg 486 |||||||||||||||||||| Sbjct: 923 cgccgctgtggcggcggcgg 904
>ref|XM_613058.2| PREDICTED: Bos taurus similar to Golgi autoantigen, golgin subfamily a, 3 (LOC533600), mRNA Length = 4586 Score = 40.1 bits (20), Expect = 6.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 229 aggttgactggatctttcct 248 |||||||||||||||||||| Sbjct: 495 aggttgactggatctttcct 476
>gb|AY657079.1| Synthetic construct Peudomonas aeruginosa clone FLH031942.01F PA2045 gene, partial cds Length = 261 Score = 40.1 bits (20), Expect = 6.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 429 cggcgcgcgccggctgctgc 448 |||||||||||||||||||| Sbjct: 147 cggcgcgcgccggctgctgc 166
>gb|CP000124.1| Burkholderia pseudomallei 1710b chromosome I, complete sequence Length = 4126292 Score = 40.1 bits (20), Expect = 6.6 Identities = 23/24 (95%) Strand = Plus / Minus Query: 428 ccggcgcgcgccggctgctgctgc 451 ||||| |||||||||||||||||| Sbjct: 723964 ccggcacgcgccggctgctgctgc 723941
>gb|CP000359.1| Deinococcus geothermalis DSM 11300, complete genome Length = 2467205 Score = 40.1 bits (20), Expect = 6.6 Identities = 23/24 (95%) Strand = Plus / Plus Query: 433 gcgcgccggctgctgctgctcgcg 456 ||||||| |||||||||||||||| Sbjct: 845021 gcgcgcccgctgctgctgctcgcg 845044
>gb|CP000058.1| Pseudomonas syringae pv. phaseolicola 1448A, complete genome Length = 5928787 Score = 40.1 bits (20), Expect = 6.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 104 cccgcttcttcggctttttt 123 |||||||||||||||||||| Sbjct: 725271 cccgcttcttcggctttttt 725290
>ref|XM_861862.1| PREDICTED: Canis familiaris hypothetical protein LOC610520 (LOC610520), mRNA Length = 933 Score = 40.1 bits (20), Expect = 6.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 432 cgcgcgccggctgctgctgc 451 |||||||||||||||||||| Sbjct: 306 cgcgcgccggctgctgctgc 325
>gb|AC145919.3| Pan troglodytes BAC clone RP43-10A14 from 7, complete sequence Length = 174235 Score = 40.1 bits (20), Expect = 6.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 98 ccgccgcccgcttcttcggc 117 |||||||||||||||||||| Sbjct: 79139 ccgccgcccgcttcttcggc 79120
>gb|BC114480.1| Homo sapiens tumor necrosis factor, alpha-induced protein 3, mRNA (cDNA clone MGC:138687 IMAGE:40036692), complete cds Length = 3825 Score = 40.1 bits (20), Expect = 6.6 Identities = 23/24 (95%) Strand = Plus / Minus Query: 240 atctttcctcccctgctcagacac 263 |||||||||| ||||||||||||| Sbjct: 2528 atctttcctctcctgctcagacac 2505
>gb|BC113871.1| Homo sapiens tumor necrosis factor, alpha-induced protein 3, mRNA (cDNA clone MGC:138688 IMAGE:40036694), complete cds Length = 3825 Score = 40.1 bits (20), Expect = 6.6 Identities = 23/24 (95%) Strand = Plus / Minus Query: 240 atctttcctcccctgctcagacac 263 |||||||||| ||||||||||||| Sbjct: 2528 atctttcctctcctgctcagacac 2505
>gb|CP000319.1| Nitrobacter hamburgensis X14, complete genome Length = 4406967 Score = 40.1 bits (20), Expect = 6.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 441 gctgctgctgctcgcgctcg 460 |||||||||||||||||||| Sbjct: 3910907 gctgctgctgctcgcgctcg 3910926
>emb|AL357060.31| Human DNA sequence from clone RP11-356I2 on chromosome 6 Contains three novel genes, the TNFAIP3 gene for tumour necrosis factor alpha-induced protein 3 and a CpG island, complete sequence Length = 182209 Score = 40.1 bits (20), Expect = 6.6 Identities = 23/24 (95%) Strand = Plus / Minus Query: 240 atctttcctcccctgctcagacac 263 |||||||||| ||||||||||||| Sbjct: 166583 atctttcctctcctgctcagacac 166560
>emb|BX640450.1| Bordetella bronchiseptica strain RB50, complete genome; segment 14/16 Length = 346287 Score = 40.1 bits (20), Expect = 6.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 428 ccggcgcgcgccggctgctg 447 |||||||||||||||||||| Sbjct: 47502 ccggcgcgcgccggctgctg 47521
>emb|BX640422.1| Bordetella pertussis strain Tohama I, complete genome; segment 12/12 Length = 257701 Score = 40.1 bits (20), Expect = 6.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 428 ccggcgcgcgccggctgctg 447 |||||||||||||||||||| Sbjct: 96870 ccggcgcgcgccggctgctg 96851
>emb|BX571965.1| Burkholderia pseudomallei strain K96243, chromosome 1, complete sequence Length = 4074542 Score = 40.1 bits (20), Expect = 6.6 Identities = 23/24 (95%) Strand = Plus / Minus Query: 428 ccggcgcgcgccggctgctgctgc 451 ||||| |||||||||||||||||| Sbjct: 532609 ccggcacgcgccggctgctgctgc 532586
>gb|BC064689.1| Homo sapiens tumor necrosis factor, alpha-induced protein 3, mRNA (cDNA clone IMAGE:30345989), complete cds Length = 5457 Score = 40.1 bits (20), Expect = 6.6 Identities = 23/24 (95%) Strand = Plus / Minus Query: 240 atctttcctcccctgctcagacac 263 |||||||||| ||||||||||||| Sbjct: 3573 atctttcctctcctgctcagacac 3550
>gb|BC041790.1| Homo sapiens tumor necrosis factor, alpha-induced protein 3, mRNA (cDNA clone IMAGE:5271522), containing frame-shift errors Length = 4549 Score = 40.1 bits (20), Expect = 6.6 Identities = 23/24 (95%) Strand = Plus / Minus Query: 240 atctttcctcccctgctcagacac 263 |||||||||| ||||||||||||| Sbjct: 2671 atctttcctctcctgctcagacac 2648
>emb|AL606649.4|OSJN00094 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBb0003B01, complete sequence Length = 153643 Score = 40.1 bits (20), Expect = 6.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 445 ctgctgctcgcgctcgcgcc 464 |||||||||||||||||||| Sbjct: 18303 ctgctgctcgcgctcgcgcc 18284
>emb|AL606657.4|OSJN00101 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBb0034I13, complete sequence Length = 123480 Score = 40.1 bits (20), Expect = 6.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 445 ctgctgctcgcgctcgcgcc 464 |||||||||||||||||||| Sbjct: 116370 ctgctgctcgcgctcgcgcc 116351
>gb|BC098379.1| Homo sapiens cDNA clone MGC:104522 IMAGE:30528328, complete cds Length = 5457 Score = 40.1 bits (20), Expect = 6.6 Identities = 23/24 (95%) Strand = Plus / Minus Query: 240 atctttcctcccctgctcagacac 263 |||||||||| ||||||||||||| Sbjct: 3573 atctttcctctcctgctcagacac 3550
>gb|AC093958.2| Drosophila melanogaster 3L BAC RP98-48M7 (Roswell Park Cancer Institute Drosophila BAC Library) complete sequence Length = 174373 Score = 40.1 bits (20), Expect = 6.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 263 cgccgccgccgccgtttcag 282 |||||||||||||||||||| Sbjct: 49667 cgccgccgccgccgtttcag 49686
>ref|NM_006290.2| Homo sapiens tumor necrosis factor, alpha-induced protein 3 (TNFAIP3), mRNA Length = 4446 Score = 40.1 bits (20), Expect = 6.6 Identities = 23/24 (95%) Strand = Plus / Minus Query: 240 atctttcctcccctgctcagacac 263 |||||||||| ||||||||||||| Sbjct: 2571 atctttcctctcctgctcagacac 2548
>gb|AE005861.1| Caulobacter crescentus CB15 section 187 of 359 of the complete genome Length = 13017 Score = 40.1 bits (20), Expect = 6.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 457 ctcgcgccctcgccgctgtg 476 |||||||||||||||||||| Sbjct: 1418 ctcgcgccctcgccgctgtg 1437
>ref|NM_168065.1| Drosophila melanogaster CG32260-RA (CG32260), mRNA Length = 1822 Score = 40.1 bits (20), Expect = 6.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 263 cgccgccgccgccgtttcag 282 |||||||||||||||||||| Sbjct: 252 cgccgccgccgccgtttcag 271
>gb|U15967.1|DMU15967 Drosophila melanogaster rfc40, Rop, and small GTP binding protein (Rop) genes, complete cds Length = 10223 Score = 40.1 bits (20), Expect = 6.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 263 cgccgccgccgccgtttcag 282 |||||||||||||||||||| Sbjct: 10060 cgccgccgccgccgtttcag 10079
>dbj|AB168334.1| Macaca fascicularis testis cDNA clone: QtsA-11293, similar to human tumor necrosis factor, alpha-induced protein 3(TNFAIP3), mRNA, RefSeq: NM_006290.2 Length = 4166 Score = 40.1 bits (20), Expect = 6.6 Identities = 23/24 (95%) Strand = Plus / Minus Query: 240 atctttcctcccctgctcagacac 263 |||||||||| ||||||||||||| Sbjct: 2785 atctttcctctcctgctcagacac 2762
>gb|AC079634.3|AC079634 Genomic Sequence for Oryza sativa, Nipponbare strain, clone OSJNBa0045C13, from Chromosome 10, complete sequence Length = 161250 Score = 40.1 bits (20), Expect = 6.6 Identities = 23/24 (95%) Strand = Plus / Plus Query: 429 cggcgcgcgccggctgctgctgct 452 ||||||||||| |||||||||||| Sbjct: 55016 cggcgcgcgcctgctgctgctgct 55039
>gb|CP000230.1| Rhodospirillum rubrum ATCC 11170, complete genome Length = 4352825 Score = 40.1 bits (20), Expect = 6.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 5 ccaatgtcttcgtcttcccc 24 |||||||||||||||||||| Sbjct: 3450061 ccaatgtcttcgtcttcccc 3450042 Score = 40.1 bits (20), Expect = 6.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 5 ccaatgtcttcgtcttcccc 24 |||||||||||||||||||| Sbjct: 1625268 ccaatgtcttcgtcttcccc 1625249
>gb|CP000040.1| Bacillus cereus E33L plasmid pE33L466, complete sequence Length = 466370 Score = 40.1 bits (20), Expect = 6.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 348 ccaatgccgccaagattgta 367 |||||||||||||||||||| Sbjct: 302155 ccaatgccgccaagattgta 302136
>gb|AC148297.3| Pan troglodytes BAC clone CH251-542K24 from chromosome 7, complete sequence Length = 192516 Score = 40.1 bits (20), Expect = 6.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 98 ccgccgcccgcttcttcggc 117 |||||||||||||||||||| Sbjct: 45949 ccgccgcccgcttcttcggc 45930
>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete sequence Length = 29644043 Score = 40.1 bits (20), Expect = 6.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 261 cacgccgccgccgccgtttc 280 |||||||||||||||||||| Sbjct: 13672473 cacgccgccgccgccgtttc 13672454 Score = 40.1 bits (20), Expect = 6.6 Identities = 29/32 (90%) Strand = Plus / Plus Query: 245 tcctcccctgctcagacacgccgccgccgccg 276 |||||| |||||| |||| ||||||||||||| Sbjct: 4339010 tcctccgctgctccgacaagccgccgccgccg 4339041
>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete sequence Length = 35954743 Score = 40.1 bits (20), Expect = 6.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 10 gtcttcgtcttcccctcacc 29 |||||||||||||||||||| Sbjct: 20551856 gtcttcgtcttcccctcacc 20551837 Score = 40.1 bits (20), Expect = 6.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 467 cgccgctgtggcggcggcgg 486 |||||||||||||||||||| Sbjct: 18288001 cgccgctgtggcggcggcgg 18288020 Score = 40.1 bits (20), Expect = 6.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 261 cacgccgccgccgccgtttc 280 |||||||||||||||||||| Sbjct: 11794582 cacgccgccgccgccgtttc 11794601 Score = 40.1 bits (20), Expect = 6.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 261 cacgccgccgccgccgtttc 280 |||||||||||||||||||| Sbjct: 11786110 cacgccgccgccgccgtttc 11786129
>gb|AY248754.1| Homo sapiens tumor necrosis factor, alpha-induced protein 3 (TNFAIP3) gene, complete cds Length = 19810 Score = 40.1 bits (20), Expect = 6.6 Identities = 23/24 (95%) Strand = Plus / Minus Query: 240 atctttcctcccctgctcagacac 263 |||||||||| ||||||||||||| Sbjct: 15956 atctttcctctcctgctcagacac 15933
>gb|AE004631.1| Pseudomonas aeruginosa PAO1, section 192 of 529 of the complete genome Length = 10864 Score = 40.1 bits (20), Expect = 6.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 429 cggcgcgcgccggctgctgc 448 |||||||||||||||||||| Sbjct: 2274 cggcgcgcgccggctgctgc 2255
>gb|AC096679.3| Pan troglodytes clone RP43-142I13, complete sequence Length = 194020 Score = 40.1 bits (20), Expect = 6.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 98 ccgccgcccgcttcttcggc 117 |||||||||||||||||||| Sbjct: 113870 ccgccgcccgcttcttcggc 113851
>gb|AY150801.1| Rhodospirillum rubrum strain S1 carotenoid gene cluster, partial sequence Length = 21929 Score = 40.1 bits (20), Expect = 6.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 5 ccaatgtcttcgtcttcccc 24 |||||||||||||||||||| Sbjct: 3943 ccaatgtcttcgtcttcccc 3962
>dbj|BA000040.2| Bradyrhizobium japonicum USDA 110 DNA, complete genome Length = 9105828 Score = 40.1 bits (20), Expect = 6.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 447 gctgctcgcgctcgcgccct 466 |||||||||||||||||||| Sbjct: 1642730 gctgctcgcgctcgcgccct 1642749
>dbj|AP005248.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC clone:OSJNBa0084P08 Length = 158656 Score = 40.1 bits (20), Expect = 6.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 261 cacgccgccgccgccgtttc 280 |||||||||||||||||||| Sbjct: 140092 cacgccgccgccgccgtttc 140073
>dbj|AP004298.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, PAC clone:P0409D09 Length = 150485 Score = 40.1 bits (20), Expect = 6.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 261 cacgccgccgccgccgtttc 280 |||||||||||||||||||| Sbjct: 23465 cacgccgccgccgccgtttc 23446
>dbj|AP003800.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC clone:OJ1014_E09 Length = 184624 Score = 40.1 bits (20), Expect = 6.6 Identities = 29/32 (90%) Strand = Plus / Plus Query: 245 tcctcccctgctcagacacgccgccgccgccg 276 |||||| |||||| |||| ||||||||||||| Sbjct: 160064 tcctccgctgctccgacaagccgccgccgccg 160095
>dbj|AP005841.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC clone:OSJNBa0052M16 Length = 145423 Score = 40.1 bits (20), Expect = 6.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 467 cgccgctgtggcggcggcgg 486 |||||||||||||||||||| Sbjct: 89214 cgccgctgtggcggcggcgg 89233
>dbj|AP005310.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, PAC clone:P0477B05 Length = 142166 Score = 40.1 bits (20), Expect = 6.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 261 cacgccgccgccgccgtttc 280 |||||||||||||||||||| Sbjct: 102472 cacgccgccgccgccgtttc 102491 Score = 40.1 bits (20), Expect = 6.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 261 cacgccgccgccgccgtttc 280 |||||||||||||||||||| Sbjct: 94000 cacgccgccgccgccgtttc 94019
>dbj|AP005611.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC clone:OSJNBa0051E21 Length = 137959 Score = 40.1 bits (20), Expect = 6.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 10 gtcttcgtcttcccctcacc 29 |||||||||||||||||||| Sbjct: 47414 gtcttcgtcttcccctcacc 47395
>dbj|AK120994.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023043O20, full insert sequence Length = 1930 Score = 40.1 bits (20), Expect = 6.6 Identities = 23/24 (95%) Strand = Plus / Plus Query: 429 cggcgcgcgccggctgctgctgct 452 ||||||||||| |||||||||||| Sbjct: 453 cggcgcgcgcctgctgctgctgct 476
>dbj|AK072431.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023093E18, full insert sequence Length = 1818 Score = 40.1 bits (20), Expect = 6.6 Identities = 29/32 (90%) Strand = Plus / Plus Query: 245 tcctcccctgctcagacacgccgccgccgccg 276 |||||| |||||| |||| ||||||||||||| Sbjct: 1163 tcctccgctgctccgacaagccgccgccgccg 1194
>dbj|AK071753.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023110I06, full insert sequence Length = 1100 Score = 40.1 bits (20), Expect = 6.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 445 ctgctgctcgcgctcgcgcc 464 |||||||||||||||||||| Sbjct: 728 ctgctgctcgcgctcgcgcc 709
>dbj|AK070319.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023050M24, full insert sequence Length = 1140 Score = 40.1 bits (20), Expect = 6.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 445 ctgctgctcgcgctcgcgcc 464 |||||||||||||||||||| Sbjct: 726 ctgctgctcgcgctcgcgcc 707
>gb|AE003480.4| Drosophila melanogaster chromosome 3L, section 14 of 83 of the complete sequence Length = 311933 Score = 40.1 bits (20), Expect = 6.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 263 cgccgccgccgccgtttcag 282 |||||||||||||||||||| Sbjct: 147465 cgccgccgccgccgtttcag 147484
>gb|BT001437.1| Drosophila melanogaster GH24648 full insert cDNA Length = 1066 Score = 40.1 bits (20), Expect = 6.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 263 cgccgccgccgccgtttcag 282 |||||||||||||||||||| Sbjct: 596 cgccgccgccgccgtttcag 615
>gb|AE001825.1| Deinococcus radiodurans R1 chromosome 2, complete sequence Length = 412348 Score = 40.1 bits (20), Expect = 6.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 444 gctgctgctcgcgctcgcgc 463 |||||||||||||||||||| Sbjct: 291667 gctgctgctcgcgctcgcgc 291686
>gb|AE000513.1| Deinococcus radiodurans R1 chromosome 1, complete sequence Length = 2648638 Score = 40.1 bits (20), Expect = 6.6 Identities = 23/24 (95%) Strand = Plus / Minus Query: 440 ggctgctgctgctcgcgctcgcgc 463 |||||| ||||||||||||||||| Sbjct: 1920643 ggctgccgctgctcgcgctcgcgc 1920620
>gb|M59465.1|HUMA20 Human tumor necrosis factor alpha inducible protein A20 mRNA, complete cds Length = 4426 Score = 40.1 bits (20), Expect = 6.6 Identities = 23/24 (95%) Strand = Plus / Minus Query: 240 atctttcctcccctgctcagacac 263 |||||||||| ||||||||||||| Sbjct: 2571 atctttcctctcctgctcagacac 2548
>emb|AL157444.1|HSM802423 Homo sapiens mRNA; cDNA DKFZp434B029 (from clone DKFZp434B029); partial cds Length = 3473 Score = 40.1 bits (20), Expect = 6.6 Identities = 23/24 (95%) Strand = Plus / Minus Query: 240 atctttcctcccctgctcagacac 263 |||||||||| ||||||||||||| Sbjct: 2043 atctttcctctcctgctcagacac 2020 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 4,909,009 Number of Sequences: 3902068 Number of extensions: 4909009 Number of successful extensions: 237463 Number of sequences better than 10.0: 89 Number of HSP's better than 10.0 without gapping: 97 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 228860 Number of HSP's gapped (non-prelim): 8603 length of query: 486 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 464 effective length of database: 17,147,199,772 effective search space: 7956300694208 effective search space used: 7956300694208 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)