>TF3C4_MOUSE (Q8BMQ2) General transcription factor 3C polypeptide 4 (EC|
           2.3.1.48) (Transcription factor IIIC-delta subunit)
           (TF3C-delta) (TFIIIC 90 kDa subunit) (TFIIIC 90)
          Length = 817

 Score = 32.3 bits (72), Expect = 0.62
 Identities = 32/126 (25%), Positives = 53/126 (42%), Gaps = 27/126 (21%)
 Frame = +1

Query: 160 DAITWSSDNLVAVASGHIVTILNPAA-LDGP-RGLVVLRPRDPSPIG-----------VV 300
           + ++WS D+ V+V++   V +L     +  P + LV+ R   P+P+            V 
Sbjct: 64  EPLSWSEDHRVSVSTARSVAVLELICDVHNPGQDLVIHRTSVPAPLNSCLLKVGSKTEVA 123

Query: 301 NREDLFEPSLVPT-----SLARDTEPCARSV---------SWSQQGFAPNSGCLLAVCTV 438
             ++ F  S  PT      L R   P  +++         SWS  G   N  CLLA  T+
Sbjct: 124 ECKEKFASSKDPTISQTFMLDRMFNPEGKALPPMRGFKYTSWSPMGCDANGRCLLAALTM 183

Query: 439 DGHVNL 456
           D  + +
Sbjct: 184 DNRLTV 189

>TF3C4_HUMAN (Q9UKN8) General transcription factor 3C polypeptide 4 (EC|
           2.3.1.48) (Transcription factor IIIC-delta subunit)
           (TF3C-delta) (TFIIIC 90 kDa subunit) (TFIIIC 90)
          Length = 822

 Score = 32.0 bits (71), Expect = 0.80
 Identities = 31/126 (24%), Positives = 52/126 (41%), Gaps = 27/126 (21%)
 Frame = +1

Query: 160 DAITWSSDNLVAVASGHIVTILNPAA-LDGP-RGLVVLRPRDPSPIG-----------VV 300
           + + WS D+ V+V++   + +L     +  P + LV+ R   P+P+            V 
Sbjct: 68  EPLAWSEDHRVSVSTARSIAVLELICDVHNPGQDLVIHRTSVPAPLNSCLLKVGSKTEVA 127

Query: 301 NREDLFEPSLVPT-----SLARDTEPCARSV---------SWSQQGFAPNSGCLLAVCTV 438
             ++ F  S  PT      L R   P  +++         SWS  G   N  CLLA  T+
Sbjct: 128 ECKEKFAASKDPTVSQTFMLDRVFNPEGKALPPMRGFKYTSWSPMGCDANGRCLLAALTM 187

Query: 439 DGHVNL 456
           D  + +
Sbjct: 188 DNRLTI 193

>TTC16_MOUSE (Q8C1F5) Tetratricopeptide repeat protein 16 (TPR repeat protein|
           16)
          Length = 767

 Score = 30.8 bits (68), Expect = 1.8
 Identities = 31/98 (31%), Positives = 40/98 (40%), Gaps = 3/98 (3%)
 Frame = -1

Query: 443 PSTVQTANKQPEFGANPCWDHETDRAHGSVSRAKDV---GTKLGSKRSSLLTTPMGEGSL 273
           PS   +  + PE G  P     T      + RAK V   G KL ++RSS   T     SL
Sbjct: 640 PSQSTSTTEAPE-GPRPSKSRSTLSVKERIRRAKAVRAQGWKLKAQRSSQKVTKTP--SL 696

Query: 272 GRSTTSPRGPSSAAGFRIVTMWPEATATKLSLDQVMAS 159
             STT      SA      T WP   A  LS  ++ ++
Sbjct: 697 THSTTHSDIGESANDTPGQTPWPSKAADSLSFSEISST 734

>SYQ_DROME (Q9Y105) Probable glutaminyl-tRNA synthetase (EC 6.1.1.18)|
           (Glutamine--tRNA ligase) (GlnRS)
          Length = 778

 Score = 30.4 bits (67), Expect = 2.3
 Identities = 11/23 (47%), Positives = 17/23 (73%)
 Frame = +2

Query: 260 LCFALGILLPLEWSTGKISLNQA 328
           LC ALGI  P++W  G++++N A
Sbjct: 473 LCNALGIYCPVQWEYGRLNMNYA 495

>DNBI_HCMVA (P17147) Major DNA-binding protein (MDBP)|
          Length = 1235

 Score = 29.6 bits (65), Expect = 4.0
 Identities = 20/46 (43%), Positives = 22/46 (47%), Gaps = 1/46 (2%)
 Frame = -3

Query: 201 GNGHQVVA*PSDGVWIGRGGNEGGGL-VMRSHGQRNLRASNPKARR 67
           G G  V   PSDG+  GRGG  GG    M   G R L AS  +  R
Sbjct: 554 GGGRDVSGGPSDGLGGGRGGGGGGDSGGMMGRGGRMLGASVDRTYR 599

>Y150_MYCPN (P75036) Very hypothetical mgpC-like protein MPN150 (E07_orf224)|
          Length = 224

 Score = 29.3 bits (64), Expect = 5.2
 Identities = 19/55 (34%), Positives = 27/55 (49%), Gaps = 1/55 (1%)
 Frame = +1

Query: 106 AMAPHYQAATLIASPSYPDAITWSSDNLVAVASGHIVTILNPAALDGP-RGLVVL 267
           A A  Y   T   + +Y  A+TWS+   +  A G+   + N A L+GP  GL  L
Sbjct: 88  AGAVGYDMTTDTNASTYNQALTWSTTAGLDSAGGYKALVENTAGLNGPINGLFTL 142

>LSP1_MOUSE (P19973) Lymphocyte-specific protein 1 (Protein pp52) (52 kDa|
           phosphoprotein) (Lymphocyte-specific antigen WP34) (S37
           protein)
          Length = 330

 Score = 29.3 bits (64), Expect = 5.2
 Identities = 21/63 (33%), Positives = 30/63 (47%), Gaps = 1/63 (1%)
 Frame = +1

Query: 274 RDPSPIGVVNREDLFEPSLVPTS-LARDTEPCARSVSWSQQGFAPNSGCLLAVCTVDGHV 450
           R PSP+ + +  +L  P L PT+ LA  TE   RS+  S       S   L + T+D  +
Sbjct: 165 RTPSPLALEDTVELSSPPLSPTTKLADRTESLNRSIKKSNS--VKKSQPTLPISTIDERL 222

Query: 451 NLY 459
             Y
Sbjct: 223 QQY 225

>DHE3_BACTN (P94598) Glutamate dehydrogenase (EC 1.4.1.3) (GDH)|
           (NAD(P)H-utilizing glutamate dehydrogenase)
          Length = 444

 Score = 29.3 bits (64), Expect = 5.2
 Identities = 17/33 (51%), Positives = 20/33 (60%)
 Frame = -1

Query: 314 RSSLLTTPMGEGSLGRSTTSPRGPSSAAGFRIV 216
           ++SL T PMG G  G S  SPRG S+A   R V
Sbjct: 112 KNSLTTLPMGGGK-GGSDFSPRGKSNAEVMRFV 143

>DCD_COREF (Q8FM44) Deoxycytidine triphosphate deaminase (EC 3.5.4.13) (dCTP|
           deaminase)
          Length = 193

 Score = 28.5 bits (62), Expect = 8.9
 Identities = 13/29 (44%), Positives = 16/29 (55%)
 Frame = -1

Query: 311 SSLLTTPMGEGSLGRSTTSPRGPSSAAGF 225
           SS   TP G GSLG      RGP+ + G+
Sbjct: 155 SSPAETPYGSGSLGSKYQGQRGPTPSKGY 183

>SL9A1_RABIT (P23791) Sodium/hydrogen exchanger 1 (Na(+)/H(+) exchanger 1)|
           (NHE-1) (Solute carrier family 9 member 1)
          Length = 816

 Score = 28.5 bits (62), Expect = 8.9
 Identities = 18/64 (28%), Positives = 32/64 (50%), Gaps = 2/64 (3%)
 Frame = +1

Query: 142 ASPSYPDAITWSSDNLVAVASG--HIVTILNPAALDGPRGLVVLRPRDPSPIGVVNREDL 315
           ASP  P+++   ++ L     G      +   AA +   G +V+RP++PS  G    +D+
Sbjct: 722 ASPQSPESVDLVNEELKGKVLGLSREPRVAEEAAEEDEDGGIVMRPKEPSSPGT---DDV 778

Query: 316 FEPS 327
           F P+
Sbjct: 779 FSPA 782


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 67,727,142
Number of Sequences: 219361
Number of extensions: 1474058
Number of successful extensions: 4525
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 4362
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4521
length of database: 80,573,946
effective HSP length: 103
effective length of database: 57,979,763
effective search space used: 3014947676
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)