ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
Japanese | English
更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name bastl32h09
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1SCND2_HUMAN (Q9GZW5) SCAN domain-containing protein 2 28 7.1
2LAMB2_HUMAN (P55268) Laminin beta-2 chain precursor (S-laminin) ... 27 9.3

>SCND2_HUMAN (Q9GZW5) SCAN domain-containing protein 2|
          Length = 306

 Score = 27.7 bits (60), Expect = 7.1
 Identities = 10/17 (58%), Positives = 12/17 (70%)
 Frame = -3

Query: 365 RQPCRRRPPGTNTWGPG 315
           R+P +RR PGT  W PG
Sbjct: 225 RRPLQRRRPGTGPWRPG 241



to top

>LAMB2_HUMAN (P55268) Laminin beta-2 chain precursor (S-laminin) (Laminin B1s|
           chain)
          Length = 1798

 Score = 27.3 bits (59), Expect = 9.3
 Identities = 10/22 (45%), Positives = 12/22 (54%)
 Frame = +2

Query: 266 EPTRTAGTGDTHCRMRLQGPRC 331
           +P    GTG  HCR  + G RC
Sbjct: 531 DPQCDEGTGQCHCRQHMVGRRC 552


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.314    0.135    0.428 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 37,479,046
Number of Sequences: 219361
Number of extensions: 449383
Number of successful extensions: 461
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 449
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 461
length of database: 80,573,946
effective HSP length: 99
effective length of database: 58,857,207
effective search space used: 1412572968
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
to top