ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name bastl32h08
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1ref|XM_542338.2| PREDICTED: Canis familiaris similar to Ssu72 RN... 46 0.059
2gb|AC006375.4| Homo sapiens BAC clone RP11-362A15 from 2, comple... 46 0.059
3emb|Y08363.1|TTALAS T.thermophilus alaS gene 44 0.23
4dbj|AP008226.1| Thermus thermophilus HB8 genomic DNA, complete g... 44 0.23
5gb|AE017221.1| Thermus thermophilus HB27, complete genome 44 0.23
6gb|AC121791.3| Mus musculus BAC clone RP23-401H19 from chromosom... 42 0.92
7emb|Z85996.1|HS431A14 Human DNA sequence from clone RP3-431A14 o... 42 0.92
8emb|AL354720.14| Human DNA sequence from clone RP11-505F3 on chr... 42 0.92
9dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic D... 42 0.92
10gb|AC021107.3|AC021107 Homo sapiens BAC clone RP11-178M5 from Y,... 42 0.92
11dbj|AP003764.3| Oryza sativa (japonica cultivar-group) genomic D... 42 0.92
12dbj|AP003258.3| Oryza sativa (japonica cultivar-group) genomic D... 42 0.92
13gb|AF111169.2|AF111169 Homo sapiens chromosome 14 BAC containing... 42 0.92
14gb|AC131975.28| Mus musculus chromosome 17, clone RP24-146B4, co... 40 3.6
15gb|AC115006.12| Mus musculus chromosome 8, clone RP24-184D21, co... 40 3.6
16gb|BC099228.1| Rattus norvegicus GTPase, IMAP family member 8, m... 40 3.6
17ref|XM_370078.1| Magnaporthe grisea 70-15 hypothetical protein (... 40 3.6
18gb|AY659343.1| Synthetic construct Peudomonas aeruginosa clone F... 40 3.6
19ref|NM_009524.2| Mus musculus wingless-related MMTV integration ... 40 3.6
20ref|XM_453073.1| Kluyveromyces lactis NRRL Y-1140, KLLA0C19547g ... 40 3.6
21emb|CT025649.7| Mouse DNA sequence from clone RP24-345B5 on chro... 40 3.6
22emb|AJ633685.1| Rattus norvegicus mRNA for IanT protein, strain ... 40 3.6
23emb|BX927347.12| Zebrafish DNA sequence from clone CH211-110D14 ... 40 3.6
24gb|AC165172.2| Zea mays clone CH201-171E16, complete sequence 40 3.6
25emb|CR382123.1| Kluyveromyces lactis strain NRRL Y-1140 chromoso... 40 3.6
26gb|AC165171.2| Zea mays clone CH201-145P10, complete sequence 40 3.6
27emb|BX296567.23| Zebrafish DNA sequence from clone DKEY-261P22 i... 40 3.6
28gb|AC069025.5| Homo sapiens chromosome 10 clone RP11-526G5, comp... 40 3.6
29ref|NM_001033923.1| Rattus norvegicus GTPase, IMAP family member... 40 3.6
30gb|AC154612.2| Mus musculus BAC clone RP23-338A21 from chromosom... 40 3.6
31dbj|AK031597.1| Mus musculus 13 days embryo male testis cDNA, RI... 40 3.6
32dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic D... 40 3.6
33dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic D... 40 3.6
34gb|AC087544.2|AC087544 Oryza sativa (japonica cultivar-group) ch... 40 3.6
35gb|AC024023.4| Homo sapiens BAC clone RP11-83C7 from 4, complete... 40 3.6
36gb|AC007464.4| Homo sapiens BAC clone RP11-542B5 from 2, complet... 40 3.6
37gb|AE004587.1| Pseudomonas aeruginosa PAO1, section 148 of 529 o... 40 3.6
38dbj|AP005243.4| Oryza sativa (japonica cultivar-group) genomic D... 40 3.6
39dbj|AP003757.2| Oryza sativa (japonica cultivar-group) genomic D... 40 3.6
40gb|AE015451.1| Pseudomonas putida KT2440 complete genome 40 3.6
41gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome... 40 3.6
42gb|AC154880.17| Mus musculus chromosome 15, clone RP24-191N3, co... 40 3.6
43gb|AC133655.4| Mus musculus BAC clone RP24-364H7 from 8, complet... 40 3.6
44gb|M89798.1|MUSWNTVA Mouse Wnt-5a mRNA, complete cds 40 3.6
45emb|AL772176.6| Mouse DNA sequence from clone RP23-37B18 on chro... 40 3.6 
>ref|XM_542338.2| PREDICTED: Canis familiaris similar to Ssu72 RNA polymerase II CTD
           phosphatase homolog (LOC485220), mRNA
          Length = 741

 Score = 46.1 bits (23), Expect = 0.059
 Identities = 23/23 (100%)
 Strand = Plus / Minus

                                  
Query: 247 cggggatgggggcacggtggtgg 269
           |||||||||||||||||||||||
Sbjct: 90  cggggatgggggcacggtggtgg 68
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>gb|AC006375.4| Homo sapiens BAC clone RP11-362A15 from 2, complete sequence
          Length = 111073

 Score = 46.1 bits (23), Expect = 0.059
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                    
Query: 12    cagaaggaagaagagggaggaac 34
             |||||||||||||||||||||||
Sbjct: 36653 cagaaggaagaagagggaggaac 36675
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>emb|Y08363.1|TTALAS T.thermophilus alaS gene
          Length = 3267

 Score = 44.1 bits (22), Expect = 0.23
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                      
Query: 166  ggaggcggggaaggagggggccatgg 191
            ||||||| ||||||||||||||||||
Sbjct: 2000 ggaggcgaggaaggagggggccatgg 2025
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>dbj|AP008226.1| Thermus thermophilus HB8 genomic DNA, complete genome
          Length = 1849742

 Score = 44.1 bits (22), Expect = 0.23
 Identities = 25/26 (96%)
 Strand = Plus / Minus

                                         
Query: 166     ggaggcggggaaggagggggccatgg 191
               ||||||| ||||||||||||||||||
Sbjct: 1712826 ggaggcgaggaaggagggggccatgg 1712801
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>gb|AE017221.1| Thermus thermophilus HB27, complete genome
          Length = 1894877

 Score = 44.1 bits (22), Expect = 0.23
 Identities = 25/26 (96%)
 Strand = Plus / Minus

                                         
Query: 166     ggaggcggggaaggagggggccatgg 191
               ||||||| ||||||||||||||||||
Sbjct: 1402378 ggaggcgaggaaggagggggccatgg 1402353
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>gb|AC121791.3| Mus musculus BAC clone RP23-401H19 from chromosome 14, complete sequence
          Length = 197720

 Score = 42.1 bits (21), Expect = 0.92
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 13     agaaggaagaagagggaggaa 33
              |||||||||||||||||||||
Sbjct: 103279 agaaggaagaagagggaggaa 103259
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>emb|Z85996.1|HS431A14 Human DNA sequence from clone RP3-431A14 on chromosome 6p21 Contains
             the CDKN1A gene for cyclin-dependent kinase inhibitor 1A,
             the gene for a novel protein similar to ras family
             protein, the gene for a novel copine-like protein
             (KIA1599), a galanin receptor pseudogene, the 3' end of
             the PPIL1 gene for peptidylprolyl isomerase protein and 2
             CpG islands, complete sequence
          Length = 195364

 Score = 42.1 bits (21), Expect = 0.92
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 144   ccaaggagcagcagcagaggc 164
             |||||||||||||||||||||
Sbjct: 43835 ccaaggagcagcagcagaggc 43815
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>emb|AL354720.14| Human DNA sequence from clone RP11-505F3 on chromosome 13 Contains the
             3' end of the gene for progesterone-induced blocking
             factor 1 (PIBF1), a proteasome (prosome, macropain) 26S
             subunit, non-ATPase, 10 (PSMD10) pseudogene, the KLF5 gene
             for Kruppel-like factor 5 (intestinal)(CKLF, IKLF, BTEB2),
             a fatty acid binding protein 5 (psoriasis-associated)
             (FABP5)(EFABP, E-FABP, PAFABP, PA-FABP) pseudogene and a
             CpG island, complete sequence
          Length = 199882

 Score = 42.1 bits (21), Expect = 0.92
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 159   agaggccggaggcggggaagg 179
             |||||||||||||||||||||
Sbjct: 59270 agaggccggaggcggggaagg 59290
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>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
                sequence
          Length = 43261740

 Score = 42.1 bits (21), Expect = 0.92
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                     
Query: 57       gggaggcgacggctcggccat 77
                |||||||||||||||||||||
Sbjct: 14041349 gggaggcgacggctcggccat 14041369
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>gb|AC021107.3|AC021107 Homo sapiens BAC clone RP11-178M5 from Y, complete sequence
          Length = 160601

 Score = 42.1 bits (21), Expect = 0.92
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 13     agaaggaagaagagggaggaa 33
              |||||||||||||||||||||
Sbjct: 157385 agaaggaagaagagggaggaa 157365
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>dbj|AP003764.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC
              clone:B1051E10
          Length = 207782

 Score = 42.1 bits (21), Expect = 0.92
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 57     gggaggcgacggctcggccat 77
              |||||||||||||||||||||
Sbjct: 201651 gggaggcgacggctcggccat 201671
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>dbj|AP003258.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
              clone:P0463A02
          Length = 151041

 Score = 42.1 bits (21), Expect = 0.92
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 57     gggaggcgacggctcggccat 77
              |||||||||||||||||||||
Sbjct: 117094 gggaggcgacggctcggccat 117114
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>gb|AF111169.2|AF111169 Homo sapiens chromosome 14 BAC containing gene for KIAA0759 and other
             possible new transcripts, complete sequence
          Length = 183916

 Score = 42.1 bits (21), Expect = 0.92
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 13    agaaggaagaagagggaggaa 33
             |||||||||||||||||||||
Sbjct: 22381 agaaggaagaagagggaggaa 22401
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>gb|AC131975.28| Mus musculus chromosome 17, clone RP24-146B4, complete sequence
          Length = 175318

 Score = 40.1 bits (20), Expect = 3.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 13     agaaggaagaagagggagga 32
              ||||||||||||||||||||
Sbjct: 125360 agaaggaagaagagggagga 125379
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>gb|AC115006.12| Mus musculus chromosome 8, clone RP24-184D21, complete sequence
          Length = 163874

 Score = 40.1 bits (20), Expect = 3.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 13     agaaggaagaagagggagga 32
              ||||||||||||||||||||
Sbjct: 147860 agaaggaagaagagggagga 147879
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>gb|BC099228.1| Rattus norvegicus GTPase, IMAP family member 8, mRNA (cDNA clone
           MGC:116406 IMAGE:7389353), complete cds
          Length = 3162

 Score = 40.1 bits (20), Expect = 3.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 141 ccaccaaggagcagcagcag 160
           ||||||||||||||||||||
Sbjct: 174 ccaccaaggagcagcagcag 193
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>ref|XM_370078.1| Magnaporthe grisea 70-15 hypothetical protein (MG06593.4) partial
           mRNA
          Length = 771

 Score = 40.1 bits (20), Expect = 3.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 256 gggcacggtggtggtgggcg 275
           ||||||||||||||||||||
Sbjct: 705 gggcacggtggtggtgggcg 686
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>gb|AY659343.1| Synthetic construct Peudomonas aeruginosa clone FLH115891.01F
           PA1594 gene, partial cds
          Length = 447

 Score = 40.1 bits (20), Expect = 3.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 71  cggccatccatggcggcgtg 90
           ||||||||||||||||||||
Sbjct: 179 cggccatccatggcggcgtg 198
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>ref|NM_009524.2| Mus musculus wingless-related MMTV integration site 5A (Wnt5a),
           mRNA
          Length = 4273

 Score = 40.1 bits (20), Expect = 3.6
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                   
Query: 162 ggccggaggcggggaaggaggggg 185
           |||| |||||||||||||||||||
Sbjct: 156 ggcccgaggcggggaaggaggggg 133
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>ref|XM_453073.1| Kluyveromyces lactis NRRL Y-1140, KLLA0C19547g predicted mRNA
          Length = 1002

 Score = 40.1 bits (20), Expect = 3.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 14  gaaggaagaagagggaggaa 33
           ||||||||||||||||||||
Sbjct: 892 gaaggaagaagagggaggaa 911
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>emb|CT025649.7| Mouse DNA sequence from clone RP24-345B5 on chromosome 14, complete
              sequence
          Length = 175794

 Score = 40.1 bits (20), Expect = 3.6
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 162    ggccggaggcggggaaggaggggg 185
              |||| |||||||||||||||||||
Sbjct: 102786 ggcccgaggcggggaaggaggggg 102809
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>emb|AJ633685.1| Rattus norvegicus mRNA for IanT protein, strain PVGRT1a
          Length = 2223

 Score = 40.1 bits (20), Expect = 3.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 141 ccaccaaggagcagcagcag 160
           ||||||||||||||||||||
Sbjct: 15  ccaccaaggagcagcagcag 34
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>emb|BX927347.12| Zebrafish DNA sequence from clone CH211-110D14 in linkage group 21,
             complete sequence
          Length = 75388

 Score = 40.1 bits (20), Expect = 3.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 14    gaaggaagaagagggaggaa 33
             ||||||||||||||||||||
Sbjct: 24974 gaaggaagaagagggaggaa 24993
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>gb|AC165172.2| Zea mays clone CH201-171E16, complete sequence
          Length = 180971

 Score = 40.1 bits (20), Expect = 3.6
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 255   ggggcacggtggtggtgggcgtgc 278
             |||||||||||||||||| |||||
Sbjct: 38078 ggggcacggtggtggtggccgtgc 38101
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>emb|CR382123.1| Kluyveromyces lactis strain NRRL Y-1140 chromosome C of strain NRRL Y-1140
               of Kluyveromyces lactis
          Length = 1753957

 Score = 40.1 bits (20), Expect = 3.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 14      gaaggaagaagagggaggaa 33
               ||||||||||||||||||||
Sbjct: 1751439 gaaggaagaagagggaggaa 1751458
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>gb|AC165171.2| Zea mays clone CH201-145P10, complete sequence
          Length = 233369

 Score = 40.1 bits (20), Expect = 3.6
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 255   ggggcacggtggtggtgggcgtgc 278
             |||||||||||||||||| |||||
Sbjct: 32554 ggggcacggtggtggtggccgtgc 32531
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>emb|BX296567.23| Zebrafish DNA sequence from clone DKEY-261P22 in linkage group 15,
              complete sequence
          Length = 224041

 Score = 40.1 bits (20), Expect = 3.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 14     gaaggaagaagagggaggaa 33
              ||||||||||||||||||||
Sbjct: 147178 gaaggaagaagagggaggaa 147197
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>gb|AC069025.5| Homo sapiens chromosome 10 clone RP11-526G5, complete sequence
          Length = 211583

 Score = 40.1 bits (20), Expect = 3.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 13     agaaggaagaagagggagga 32
              ||||||||||||||||||||
Sbjct: 194686 agaaggaagaagagggagga 194667
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>ref|NM_001033923.1| Rattus norvegicus GTPase, IMAP family member 8 (Gimap8), mRNA
          Length = 3162

 Score = 40.1 bits (20), Expect = 3.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 141 ccaccaaggagcagcagcag 160
           ||||||||||||||||||||
Sbjct: 174 ccaccaaggagcagcagcag 193
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>gb|AC154612.2| Mus musculus BAC clone RP23-338A21 from chromosome 14, complete sequence
          Length = 197282

 Score = 40.1 bits (20), Expect = 3.6
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 162    ggccggaggcggggaaggaggggg 185
              |||| |||||||||||||||||||
Sbjct: 170195 ggcccgaggcggggaaggaggggg 170218
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>dbj|AK031597.1| Mus musculus 13 days embryo male testis cDNA, RIKEN full-length
           enriched library, clone:6030458C17 product:WNT-5A
           PROTEIN, full insert sequence
          Length = 3809

 Score = 40.1 bits (20), Expect = 3.6
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                   
Query: 162 ggccggaggcggggaaggaggggg 185
           |||| |||||||||||||||||||
Sbjct: 129 ggcccgaggcggggaaggaggggg 106
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>dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 10, complete
                sequence
          Length = 22685906

 Score = 40.1 bits (20), Expect = 3.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                    
Query: 13       agaaggaagaagagggagga 32
                ||||||||||||||||||||
Sbjct: 15385389 agaaggaagaagagggagga 15385370
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>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete
                sequence
          Length = 29644043

 Score = 40.1 bits (20), Expect = 3.6
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                        
Query: 149      gagcagcagcagaggccggaggcg 172
                ||||||||||||||||| ||||||
Sbjct: 28707733 gagcagcagcagaggccagaggcg 28707756
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>gb|AC087544.2|AC087544 Oryza sativa (japonica cultivar-group) chromosome 10 clone nbxb0046P18,
              complete sequence
          Length = 144720

 Score = 40.1 bits (20), Expect = 3.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 13     agaaggaagaagagggagga 32
              ||||||||||||||||||||
Sbjct: 102752 agaaggaagaagagggagga 102733
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>gb|AC024023.4| Homo sapiens BAC clone RP11-83C7 from 4, complete sequence
          Length = 159875

 Score = 40.1 bits (20), Expect = 3.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 14    gaaggaagaagagggaggaa 33
             ||||||||||||||||||||
Sbjct: 35648 gaaggaagaagagggaggaa 35629
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>gb|AC007464.4| Homo sapiens BAC clone RP11-542B5 from 2, complete sequence
          Length = 186187

 Score = 40.1 bits (20), Expect = 3.6
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 137   gtctccaccaaggagcagcagcag 160
             |||||| |||||||||||||||||
Sbjct: 29585 gtctcccccaaggagcagcagcag 29562
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>gb|AE004587.1| Pseudomonas aeruginosa PAO1, section 148 of 529 of the complete
            genome
          Length = 11149

 Score = 40.1 bits (20), Expect = 3.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 71   cggccatccatggcggcgtg 90
            ||||||||||||||||||||
Sbjct: 5898 cggccatccatggcggcgtg 5917
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>dbj|AP005243.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC
             clone:OJ1205_F02
          Length = 112862

 Score = 40.1 bits (20), Expect = 3.6
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 149   gagcagcagcagaggccggaggcg 172
             ||||||||||||||||| ||||||
Sbjct: 15294 gagcagcagcagaggccagaggcg 15317
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>dbj|AP003757.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC
             clone:OJ1409_C08
          Length = 90673

 Score = 40.1 bits (20), Expect = 3.6
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 149   gagcagcagcagaggccggaggcg 172
             ||||||||||||||||| ||||||
Sbjct: 82903 gagcagcagcagaggccagaggcg 82926
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>gb|AE015451.1| Pseudomonas putida KT2440 complete genome
          Length = 6181863

 Score = 40.1 bits (20), Expect = 3.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 71      cggccatccatggcggcgtg 90
               ||||||||||||||||||||
Sbjct: 4723936 cggccatccatggcggcgtg 4723917
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>gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome 10, complete sequence
          Length = 22698374

 Score = 40.1 bits (20), Expect = 3.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                    
Query: 13       agaaggaagaagagggagga 32
                ||||||||||||||||||||
Sbjct: 15393630 agaaggaagaagagggagga 15393611
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>gb|AC154880.17| Mus musculus chromosome 15, clone RP24-191N3, complete sequence
          Length = 184220

 Score = 40.1 bits (20), Expect = 3.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 14    gaaggaagaagagggaggaa 33
             ||||||||||||||||||||
Sbjct: 64157 gaaggaagaagagggaggaa 64138
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>gb|AC133655.4| Mus musculus BAC clone RP24-364H7 from 8, complete sequence
          Length = 177145

 Score = 40.1 bits (20), Expect = 3.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 13     agaaggaagaagagggagga 32
              ||||||||||||||||||||
Sbjct: 109100 agaaggaagaagagggagga 109081
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>gb|M89798.1|MUSWNTVA Mouse Wnt-5a mRNA, complete cds
          Length = 1690

 Score = 40.1 bits (20), Expect = 3.6
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                   
Query: 162 ggccggaggcggggaaggaggggg 185
           |||| |||||||||||||||||||
Sbjct: 73  ggcccgaggcggggaaggaggggg 50
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>emb|AL772176.6| Mouse DNA sequence from clone RP23-37B18 on chromosome 4, complete
             sequence
          Length = 127986

 Score = 40.1 bits (20), Expect = 3.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 13    agaaggaagaagagggagga 32
             ||||||||||||||||||||
Sbjct: 88407 agaaggaagaagagggagga 88388


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 3,057,003
Number of Sequences: 3902068
Number of extensions: 3057003
Number of successful extensions: 71469
Number of sequences better than 10.0: 45
Number of HSP's better than 10.0 without gapping: 45
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 71103
Number of HSP's gapped (non-prelim): 366
length of query: 278
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 256
effective length of database: 17,147,199,772
effective search space: 4389683141632
effective search space used: 4389683141632
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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