>SRRM1_HUMAN (Q8IYB3) Serine/arginine repetitive matrix protein 1|
           (Ser/Arg-related nuclear matrix protein) (SR-related
           nuclear matrix protein of 160 kDa) (SRm160)
          Length = 904

 Score = 29.6 bits (65), Expect = 2.3
 Identities = 19/53 (35%), Positives = 26/53 (49%), Gaps = 5/53 (9%)
 Frame = -3

Query: 146 PKFPARRMQKAGLHE*HSDLRFRT*SPT-----TSGQGGRARSPTPPPQARKK 3
           PK    +  + G    HS  R  + SP      TS +G R RSP+PPP  R++
Sbjct: 507 PKRSHVKNGEVGRRRRHSPSRSASPSPRKRQKETSPRGRRRRSPSPPPTRRRR 559

>LIPA2_MOUSE (Q8BSS9) Liprin-alpha-2 (Protein tyrosine phosphatase receptor type|
           f polypeptide-interacting protein alpha-2)
           (PTPRF-interacting protein alpha-2)
          Length = 1257

 Score = 28.5 bits (62), Expect = 5.2
 Identities = 21/58 (36%), Positives = 26/58 (44%), Gaps = 7/58 (12%)
 Frame = -3

Query: 161 NTPK-TPKFPARRMQKAGLHE*HSDLRFRT*SPTTSGQGGRARSPT------PPPQAR 9
           +TPK TP+ PAR M + G+    SDLR          + GR    T      PPP  R
Sbjct: 723 STPKLTPRSPAREMDRMGVMTLPSDLRKHRRKIAVVEEDGREDKATIKCETSPPPTPR 780

>LIPA2_HUMAN (O75334) Liprin-alpha-2 (Protein tyrosine phosphatase receptor type|
           f polypeptide-interacting protein alpha-2)
           (PTPRF-interacting protein alpha-2)
          Length = 1257

 Score = 28.5 bits (62), Expect = 5.2
 Identities = 21/58 (36%), Positives = 26/58 (44%), Gaps = 7/58 (12%)
 Frame = -3

Query: 161 NTPK-TPKFPARRMQKAGLHE*HSDLRFRT*SPTTSGQGGRARSPT------PPPQAR 9
           +TPK TP+ PAR M + G+    SDLR          + GR    T      PPP  R
Sbjct: 723 STPKLTPRSPAREMDRMGVMTLPSDLRKHRRKIAVVEEDGREDKATIKCETSPPPTPR 780

>SRPK1_HUMAN (Q96SB4) Serine/threonine-protein kinase SRPK1 (EC 2.7.11.1)|
           (Serine/arginine-rich protein-specific kinase 1)
           (SR-protein-specific kinase 1) (SFRS protein kinase 1)
          Length = 826

 Score = 28.1 bits (61), Expect = 6.8
 Identities = 13/37 (35%), Positives = 18/37 (48%)
 Frame = -1

Query: 172 TAPKTPPKHPSFQLAVCKRLACTNSTAT*DSEPDPQQ 62
           T P+TPP HP+  L      A     A+   +P P+Q
Sbjct: 106 TRPETPPAHPARALLCAPWAASPTPAASPSPQPPPRQ 142

>BD02_HUMAN (O15263) Beta-defensin 2 precursor (BD-2) (hBD-2) (Defensin, beta|
           2) (Skin-antimicrobial peptide 1) (SAP1)
          Length = 64

 Score = 28.1 bits (61), Expect = 6.8
 Identities = 18/42 (42%), Positives = 21/42 (50%), Gaps = 3/42 (7%)
 Frame = +1

Query: 43  LPPCPDV---VGDQVLNLKSLCYSCKPAFCIRRAGNLGVLGV 159
           L P P V   +GD V  LKS    C P FC RR   +G  G+
Sbjct: 15  LMPLPGVFGGIGDPVTCLKSGAI-CHPVFCPRRYKQIGTCGL 55

>Y1463_METTH (Q50500) Hypothetical protein MTH1463 (ORF11)|
          Length = 142

 Score = 27.7 bits (60), Expect = 8.9
 Identities = 13/29 (44%), Positives = 18/29 (62%)
 Frame = +1

Query: 64  VGDQVLNLKSLCYSCKPAFCIRRAGNLGV 150
           +GD+V+ ++S  YSC PA       NLGV
Sbjct: 10  LGDEVIVMQSRSYSCGPAALATVLRNLGV 38

>KITH_MYCMO (Q6KH30) Thymidine kinase (EC 2.7.1.21)|
          Length = 200

 Score = 27.7 bits (60), Expect = 8.9
 Identities = 10/18 (55%), Positives = 14/18 (77%)
 Frame = +1

Query: 64  VGDQVLNLKSLCYSCKPA 117
           + D VL LK++C+SCK A
Sbjct: 134 IADDVLKLKAVCFSCKNA 151

>COAT_TRVCA (P05070) Coat protein (Capsid protein)|
          Length = 223

 Score = 27.7 bits (60), Expect = 8.9
 Identities = 10/18 (55%), Positives = 12/18 (66%)
 Frame = -3

Query: 71  SPTTSGQGGRARSPTPPP 18
           +P TSG  G   +PTPPP
Sbjct: 204 APPTSGSSGSGAAPTPPP 221

>CX020_HUMAN (Q8NDZ0) Protein CXorf20|
          Length = 799

 Score = 27.7 bits (60), Expect = 8.9
 Identities = 11/28 (39%), Positives = 16/28 (57%)
 Frame = +1

Query: 1   FFFLACGGGVGERALPPCPDVVGDQVLN 84
           FF L+      +R  PPCP   GDQ+++
Sbjct: 107 FFHLSLPSSWDDRRTPPCPVAHGDQIVS 134


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 26,488,831
Number of Sequences: 219361
Number of extensions: 411956
Number of successful extensions: 1811
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 1742
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1808
length of database: 80,573,946
effective HSP length: 32
effective length of database: 73,554,394
effective search space used: 1765305456
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)