ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bastl32h03 |
|---|---|
| Clone Library Name | barley_pub |
>CESA7_ARATH (Q9SWW6) Cellulose synthase A catalytic subunit 7 [UDP-forming] (EC| 2.4.1.12) (AtCesA-7) (Irregular xylem protein 3) (AtIRX3) Length = 1026 Score = 123 bits (308), Expect = 2e-28 Identities = 59/91 (64%), Positives = 63/91 (69%) Frame = +3 Query: 156 LVAGSHNRNELVVIRRDGEPGARPLKQQNRGACQICXXXXXXXXXXXXFVACNECAFPVC 335 LVAGSHNRNELVVI EP +PLK + C+IC FVACNEC FP C Sbjct: 7 LVAGSHNRNELVVIHNHEEP--KPLKNLDGQFCEICGDQIGLTVEGDLFVACNECGFPAC 64 Query: 336 RDCYEYERREGTQNCPQCKTRYKRLKGCARV 428 R CYEYERREGTQNCPQCKTRYKRL+G RV Sbjct: 65 RPCYEYERREGTQNCPQCKTRYKRLRGSPRV 95
>CESA5_ARATH (Q8L778) Cellulose synthase A catalytic subunit 5 [UDP-forming] (EC| 2.4.1.12) (AtCesA-5) Length = 1069 Score = 119 bits (298), Expect = 3e-27 Identities = 54/91 (59%), Positives = 62/91 (68%) Frame = +3 Query: 156 LVAGSHNRNELVVIRRDGEPGARPLKQQNRGACQICXXXXXXXXXXXXFVACNECAFPVC 335 L+AGSHNRNE V+I D R +++ + CQIC FVACNECAFPVC Sbjct: 7 LIAGSHNRNEFVLINADESARIRSVEELSGQTCQICGDEIELSVDGESFVACNECAFPVC 66 Query: 336 RDCYEYERREGTQNCPQCKTRYKRLKGCARV 428 R CYEYERREG Q+CPQCKTRYKR+KG RV Sbjct: 67 RPCYEYERREGNQSCPQCKTRYKRIKGSPRV 97
>CESA1_ARATH (O48946) Cellulose synthase A catalytic subunit 1 [UDP-forming] (EC| 2.4.1.12) (AtCesA-1) (Radially swollen protein 1) (AtRSW1) Length = 1081 Score = 119 bits (297), Expect = 4e-27 Identities = 54/91 (59%), Positives = 63/91 (69%) Frame = +3 Query: 156 LVAGSHNRNELVVIRRDGEPGARPLKQQNRGACQICXXXXXXXXXXXXFVACNECAFPVC 335 LVAGS+ RNELV IR + + G +PLK N CQIC FVACNECAFPVC Sbjct: 7 LVAGSYRRNELVRIRHESDGGTKPLKNMNGQICQICGDDVGLAETGDVFVACNECAFPVC 66 Query: 336 RDCYEYERREGTQNCPQCKTRYKRLKGCARV 428 R CYEYER++GTQ CPQCKTR++R +G RV Sbjct: 67 RPCYEYERKDGTQCCPQCKTRFRRHRGSPRV 97
>CESA2_ARATH (O48947) Cellulose synthase A catalytic subunit 2 [UDP-forming] (EC| 2.4.1.12) (AtCesA-2) (Ath-A) Length = 1084 Score = 118 bits (296), Expect = 5e-27 Identities = 54/91 (59%), Positives = 61/91 (67%) Frame = +3 Query: 156 LVAGSHNRNELVVIRRDGEPGARPLKQQNRGACQICXXXXXXXXXXXXFVACNECAFPVC 335 L+AGSHNRNE V+I D R +++ + CQIC FVACNECAFPVC Sbjct: 7 LIAGSHNRNEFVLINADESARIRSVQELSGQTCQICGDEIELTVSSELFVACNECAFPVC 66 Query: 336 RDCYEYERREGTQNCPQCKTRYKRLKGCARV 428 R CYEYERREG Q CPQCKTRYKR+KG RV Sbjct: 67 RPCYEYERREGNQACPQCKTRYKRIKGSPRV 97
>CESA6_ARATH (Q94JQ6) Cellulose synthase A catalytic subunit 6 [UDP-forming] (EC| 2.4.1.12) (AtCesA-6) (Isoxaben resistant protein 2) (Protein PROCUSTE1) (Protein Quill) (AraxCelA) Length = 1084 Score = 116 bits (291), Expect = 2e-26 Identities = 54/91 (59%), Positives = 61/91 (67%) Frame = +3 Query: 156 LVAGSHNRNELVVIRRDGEPGARPLKQQNRGACQICXXXXXXXXXXXXFVACNECAFPVC 335 L+AGSHNRNE V+I D R +++ + CQIC FVACNECAFPVC Sbjct: 7 LIAGSHNRNEFVLINADENARIRSVQELSGQTCQICRDEIELTVDGEPFVACNECAFPVC 66 Query: 336 RDCYEYERREGTQNCPQCKTRYKRLKGCARV 428 R CYEYERREG Q CPQCKTR+KRLKG RV Sbjct: 67 RPCYEYERREGNQACPQCKTRFKRLKGSPRV 97
>CESA9_ARATH (Q9SJ22) Probable cellulose synthase A catalytic subunit 9| [UDP-forming] (EC 2.4.1.12) (AtCesA-9) Length = 1088 Score = 110 bits (275), Expect = 1e-24 Identities = 50/91 (54%), Positives = 58/91 (63%) Frame = +3 Query: 156 LVAGSHNRNELVVIRRDGEPGARPLKQQNRGACQICXXXXXXXXXXXXFVACNECAFPVC 335 L+AGSHNRNE V+I D R ++ + C+IC F+ACNECAFP C Sbjct: 7 LIAGSHNRNEFVLINADDTARIRSAEELSGQTCKICRDEIELTDNGEPFIACNECAFPTC 66 Query: 336 RDCYEYERREGTQNCPQCKTRYKRLKGCARV 428 R CYEYERREG Q CPQC TRYKR+KG RV Sbjct: 67 RPCYEYERREGNQACPQCGTRYKRIKGSPRV 97
>CESAA_ARATH (Q9SKJ5) Probable cellulose synthase A catalytic subunit 10| [UDP-forming] (EC 2.4.1.12) (AtCesA-10) (AtCesA-13) Length = 1065 Score = 102 bits (255), Expect = 3e-22 Identities = 46/91 (50%), Positives = 57/91 (62%) Frame = +3 Query: 156 LVAGSHNRNELVVIRRDGEPGARPLKQQNRGACQICXXXXXXXXXXXXFVACNECAFPVC 335 +VAGS+ R E V R D + G +PLK N CQIC FVACNEC FP+C Sbjct: 1 MVAGSYRRYEFVRNRDDSDDGLKPLKDLNGQICQICGDDVGLTKTGNVFVACNECGFPLC 60 Query: 336 RDCYEYERREGTQNCPQCKTRYKRLKGCARV 428 + CYEYER++G+Q CPQCK R++R G RV Sbjct: 61 QSCYEYERKDGSQCCPQCKARFRRHNGSPRV 91
>CESA3_ARATH (Q941L0) Cellulose synthase A catalytic subunit 3 [UDP-forming] (EC| 2.4.1.12) (AtCesA-3) (Constitutive expression of VSP1 protein 1) (Isoxaben resistant protein 1) (Ath-B) Length = 1065 Score = 94.7 bits (234), Expect = 8e-20 Identities = 40/76 (52%), Positives = 49/76 (64%) Frame = +3 Query: 204 DGEPGARPLKQQNRGACQICXXXXXXXXXXXXFVACNECAFPVCRDCYEYERREGTQNCP 383 +GE +P+K CQIC FVAC+ C+FPVCR CYEYER++G Q+CP Sbjct: 4 EGETAGKPMKNIVPQTCQICSDNVGKTVDGDRFVACDICSFPVCRPCYEYERKDGNQSCP 63 Query: 384 QCKTRYKRLKGCARVP 431 QCKTRYKRLKG +P Sbjct: 64 QCKTRYKRLKGSPAIP 79
>CESA4_ARATH (Q84JA6) Cellulose synthase A catalytic subunit 4 [UDP-forming] (EC| 2.4.1.12) (AtCesA-4) (Irregular xylem protein 5) (AtIRX5) Length = 1049 Score = 69.3 bits (168), Expect = 4e-12 Identities = 27/59 (45%), Positives = 35/59 (59%) Frame = +3 Query: 252 CQICXXXXXXXXXXXXFVACNECAFPVCRDCYEYERREGTQNCPQCKTRYKRLKGCARV 428 C++C FVAC+ C +PVC+ CYEYER G + CPQC T YKR KG ++ Sbjct: 23 CKVCGDEVKDDDNGQTFVACHVCVYPVCKPCYEYERSNGNKCCPQCNTLYKRHKGSPKI 81
>CESA8_ARATH (Q8LPK5) Cellulose synthase A catalytic subunit 8 [UDP-forming] (EC| 2.4.1.12) (AtCesA-8) (Irregular xylem protein 1) (AtIRX1) Length = 985 Score = 51.2 bits (121), Expect = 1e-06 Identities = 20/50 (40%), Positives = 27/50 (54%) Frame = +3 Query: 252 CQICXXXXXXXXXXXXFVACNECAFPVCRDCYEYERREGTQNCPQCKTRY 401 C C FVAC+EC+FP+C+ C EYE +EG + C +C Y Sbjct: 9 CNTCGEEIGVKSNGEFFVACHECSFPICKACLEYEFKEGRRICLRCGNPY 58
>MYRIP_MOUSE (Q8K3I4) Rab effector MyRIP (Myosin-VIIa- and Rab-interacting| protein) (Exophilin-8) (Slp homolog lacking C2 domains c) Length = 856 Score = 32.0 bits (71), Expect = 0.65 Identities = 11/28 (39%), Positives = 15/28 (53%) Frame = +3 Query: 309 CNECAFPVCRDCYEYERREGTQNCPQCK 392 C EC F VC+ C Y++ E C C+ Sbjct: 81 CGECKFSVCKSCCSYQKHEKLWVCCVCQ 108
>MYRIP_HUMAN (Q8NFW9) Rab effector MyRIP (Myosin-VIIa- and Rab-interacting| protein) (Exophilin-8) (Slp homolog lacking C2 domains c) Length = 859 Score = 30.8 bits (68), Expect = 1.5 Identities = 10/28 (35%), Positives = 15/28 (53%) Frame = +3 Query: 309 CNECAFPVCRDCYEYERREGTQNCPQCK 392 C +C F VC+ C Y++ E C C+ Sbjct: 81 CGDCKFNVCKSCCSYQKHEKAWVCCVCQ 108
>YL053_MIMIV (Q5UPC9) Hypothetical protein L53| Length = 100 Score = 30.4 bits (67), Expect = 1.9 Identities = 17/54 (31%), Positives = 20/54 (37%) Frame = +3 Query: 252 CQICXXXXXXXXXXXXFVACNECAFPVCRDCYEYERREGTQNCPQCKTRYKRLK 413 C+IC F++C E PV CYE T C CK K K Sbjct: 7 CKICCASAKKCCDEPVFISCREKCEPVIYKCYEICEPVCTPVCKPCKPICKPCK 60
>YAC4_SCHPO (Q09818) Putative general negative regulator of transcription| C16C9.04c Length = 489 Score = 29.6 bits (65), Expect = 3.2 Identities = 9/29 (31%), Positives = 16/29 (55%) Frame = +3 Query: 315 ECAFPVCRDCYEYERREGTQNCPQCKTRY 401 +C + VCR C+ + + + CP C+ Y Sbjct: 36 QCGYRVCRFCWHHIKEDLNGRCPACRRLY 64
>MAT1_MARGL (P51950) CDK-activating kinase assembly factor MAT1 (RING finger| protein MAT1) (Menage a trois) (CDK7/cyclin H assembly factor) Length = 324 Score = 29.6 bits (65), Expect = 3.2 Identities = 11/32 (34%), Positives = 16/32 (50%) Frame = +3 Query: 312 NECAFPVCRDCYEYERREGTQNCPQCKTRYKR 407 N C +C +C E G+ +CP C T +R Sbjct: 25 NVCGHTLCENCVEILFVRGSGSCPSCNTPLRR 56
>JHD2C_HUMAN (Q15652) Probable JmjC domain-containing histone demethylation| protein 2C (EC 1.14.11.-) (Jumonji domain-containing protein 1C) (Thyroid receptor-interacting protein 8) (TRIP-8) Length = 2540 Score = 29.6 bits (65), Expect = 3.2 Identities = 9/23 (39%), Positives = 16/23 (69%) Frame = +3 Query: 309 CNECAFPVCRDCYEYERREGTQN 377 C +C F VC DCY+ + R+ +++ Sbjct: 1860 CQKCGFVVCLDCYKAKERKSSRD 1882
>RING1_DROME (Q9VB08) Ubiquitin ligase protein RING1 (EC 6.3.2.-) (dRING1)| (dRING protein) (Sex comb extra protein) Length = 435 Score = 29.3 bits (64), Expect = 4.2 Identities = 17/69 (24%), Positives = 22/69 (31%) Frame = +3 Query: 192 VIRRDGEPGARPLKQQNRGACQICXXXXXXXXXXXXFVACNECAFPVCRDCYEYERREGT 371 VI E P + C IC + EC C DC R G Sbjct: 26 VITDSTEIAVSPRSLHSELMCPICLDMLKKT------MTTKECLHRFCSDCIVTALRSGN 79 Query: 372 QNCPQCKTR 398 + CP C+ + Sbjct: 80 KECPTCRKK 88
>RNF4_HUMAN (P78317) RING finger protein 4| Length = 190 Score = 29.3 bits (64), Expect = 4.2 Identities = 14/67 (20%), Positives = 22/67 (32%) Frame = +3 Query: 198 RRDGEPGARPLKQQNRGACQICXXXXXXXXXXXXFVACNECAFPVCRDCYEYERREGTQN 377 R + GA L+ +C IC + EC C C + + Sbjct: 114 RNARDEGATGLRPSGTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLR-DSLKNANT 172 Query: 378 CPQCKTR 398 CP C+ + Sbjct: 173 CPTCRKK 179
>RING1_MACMU (Q8WMN5) Polycomb complex protein RING1 (RING finger protein 1)| Length = 377 Score = 28.9 bits (63), Expect = 5.5 Identities = 10/28 (35%), Positives = 13/28 (46%) Frame = +3 Query: 315 ECAFPVCRDCYEYERREGTQNCPQCKTR 398 EC C DC R G + CP C+ + Sbjct: 34 ECLHRFCSDCIVTALRSGNKECPTCRKK 61
>JHD2A_RAT (Q63679) JmjC domain-containing histone demethylation protein 2A| (EC 1.14.11.-) (Jumonji domain-containing protein 1A) (Testis-specific gene A protein) (Zinc-finger protein TSGA) Length = 1214 Score = 28.9 bits (63), Expect = 5.5 Identities = 12/26 (46%), Positives = 14/26 (53%) Frame = +3 Query: 309 CNECAFPVCRDCYEYERREGTQNCPQ 386 C C F VC DCY +R+ NC Q Sbjct: 560 CPRCGFGVCVDCYRLKRK----NCQQ 581
>RING1_RAT (Q6MGB6) Polycomb complex protein RING1 (RING finger protein 1)| Length = 406 Score = 28.9 bits (63), Expect = 5.5 Identities = 10/28 (35%), Positives = 13/28 (46%) Frame = +3 Query: 315 ECAFPVCRDCYEYERREGTQNCPQCKTR 398 EC C DC R G + CP C+ + Sbjct: 63 ECLHRFCSDCIVTALRSGNKECPTCRKK 90
>RING1_MOUSE (O35730) Polycomb complex protein RING1 (RING finger protein 1)| (Transcription repressor Ring1A) Length = 406 Score = 28.9 bits (63), Expect = 5.5 Identities = 10/28 (35%), Positives = 13/28 (46%) Frame = +3 Query: 315 ECAFPVCRDCYEYERREGTQNCPQCKTR 398 EC C DC R G + CP C+ + Sbjct: 63 ECLHRFCSDCIVTALRSGNKECPTCRKK 90
>RING1_HUMAN (Q06587) Polycomb complex protein RING1 (RING finger protein 1)| Length = 406 Score = 28.9 bits (63), Expect = 5.5 Identities = 10/28 (35%), Positives = 13/28 (46%) Frame = +3 Query: 315 ECAFPVCRDCYEYERREGTQNCPQCKTR 398 EC C DC R G + CP C+ + Sbjct: 63 ECLHRFCSDCIVTALRSGNKECPTCRKK 90
>RING1_CANFA (Q5TJF3) Ubiquitin ligase protein RING1 (EC 6.3.2.-) (RING finger| protein 1) (RING1a) Length = 406 Score = 28.9 bits (63), Expect = 5.5 Identities = 10/28 (35%), Positives = 13/28 (46%) Frame = +3 Query: 315 ECAFPVCRDCYEYERREGTQNCPQCKTR 398 EC C DC R G + CP C+ + Sbjct: 63 ECLHRFCSDCIVTALRSGNKECPTCRKK 90
>JHD2A_MOUSE (Q6PCM1) JmjC domain-containing histone demethylation protein 2A| (EC 1.14.11.-) (Jumonji domain-containing protein 1A) Length = 1323 Score = 28.9 bits (63), Expect = 5.5 Identities = 12/26 (46%), Positives = 14/26 (53%) Frame = +3 Query: 309 CNECAFPVCRDCYEYERREGTQNCPQ 386 C C F VC DCY +R+ NC Q Sbjct: 676 CPRCGFGVCVDCYRMKRK----NCQQ 697
>RNG2B_XENLA (Q7ZWM8) Ubiquitin ligase protein RING2-B (EC 6.3.2.-) (RING finger| protein 2-B) (RING finger protein 1B-B) (RING1b-B) Length = 343 Score = 28.9 bits (63), Expect = 5.5 Identities = 10/28 (35%), Positives = 13/28 (46%) Frame = +3 Query: 315 ECAFPVCRDCYEYERREGTQNCPQCKTR 398 EC C DC R G + CP C+ + Sbjct: 62 ECLHRFCSDCIVTALRSGNKECPTCRKK 89
>RNF4_MOUSE (Q9QZS2) RING finger protein 4| Length = 194 Score = 28.9 bits (63), Expect = 5.5 Identities = 15/65 (23%), Positives = 21/65 (32%) Frame = +3 Query: 204 DGEPGARPLKQQNRGACQICXXXXXXXXXXXXFVACNECAFPVCRDCYEYERREGTQNCP 383 DG G RP +C IC + EC C C + + CP Sbjct: 123 DGATGPRP---SGTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLR-DSLKNANTCP 178 Query: 384 QCKTR 398 C+ + Sbjct: 179 TCRKK 183
>JHD2A_HUMAN (Q9Y4C1) JmjC domain-containing histone demethylation protein 2A| (EC 1.14.11.-) (Jumonji domain-containing protein 1A) Length = 1321 Score = 28.9 bits (63), Expect = 5.5 Identities = 12/26 (46%), Positives = 14/26 (53%) Frame = +3 Query: 309 CNECAFPVCRDCYEYERREGTQNCPQ 386 C C F VC DCY +R+ NC Q Sbjct: 676 CPRCGFGVCVDCYRMKRK----NCQQ 697
>RPOB_THEAC (Q03587) DNA-directed RNA polymerase subunit B (EC 2.7.7.6)| Length = 1195 Score = 28.9 bits (63), Expect = 5.5 Identities = 11/24 (45%), Positives = 13/24 (54%) Frame = +3 Query: 318 CAFPVCRDCYEYERREGTQNCPQC 389 C P C Y+RR+GT CP C Sbjct: 1135 CGNPSCGHIAIYDRRKGTLRCPVC 1158
>RNG2A_XENLA (Q66J69) Ubiquitin ligase protein RING2-A (EC 6.3.2.-) (RING finger| protein 2-A) (RING finger protein 1B-A) (RING1b-A) Length = 344 Score = 28.9 bits (63), Expect = 5.5 Identities = 10/28 (35%), Positives = 13/28 (46%) Frame = +3 Query: 315 ECAFPVCRDCYEYERREGTQNCPQCKTR 398 EC C DC R G + CP C+ + Sbjct: 63 ECLHRFCSDCIVTALRSGNKECPTCRKK 90
>MAT1_MOUSE (P51949) CDK-activating kinase assembly factor MAT1 (RING finger| protein MAT1) (Menage a trois) (CDK7/cyclin H assembly factor) (p36) (p35) Length = 309 Score = 28.5 bits (62), Expect = 7.2 Identities = 10/32 (31%), Positives = 15/32 (46%) Frame = +3 Query: 312 NECAFPVCRDCYEYERREGTQNCPQCKTRYKR 407 N C +C C + G NCP+C T ++ Sbjct: 24 NVCGHTLCESCVDLLFVRGAGNCPECGTPLRK 55
>MAT1_HUMAN (P51948) CDK-activating kinase assembly factor MAT1 (RING finger| protein MAT1) (Menage a trois) (CDK7/cyclin H assembly factor) (p36) (p35) (Cyclin G1-interacting protein) (RING finger protein 66) Length = 309 Score = 28.5 bits (62), Expect = 7.2 Identities = 10/32 (31%), Positives = 15/32 (46%) Frame = +3 Query: 312 NECAFPVCRDCYEYERREGTQNCPQCKTRYKR 407 N C +C C + G NCP+C T ++ Sbjct: 24 NVCGHTLCESCVDLLFVRGAGNCPECGTPLRK 55
>RING2_PONPY (Q5R9J5) Ubiquitin ligase protein RING2 (EC 6.3.2.-) (RING finger| protein 2) (RING finger protein 1B) (RING1b) Length = 336 Score = 28.5 bits (62), Expect = 7.2 Identities = 10/28 (35%), Positives = 13/28 (46%) Frame = +3 Query: 315 ECAFPVCRDCYEYERREGTQNCPQCKTR 398 EC C DC R G + CP C+ + Sbjct: 66 ECLHRFCADCIITALRSGNKECPTCRKK 93
>RING2_MOUSE (Q9CQJ4) Ubiquitin ligase protein RING2 (EC 6.3.2.-) (RING finger| protein 2) (RING finger protein 1B) (RING1b) Length = 336 Score = 28.5 bits (62), Expect = 7.2 Identities = 10/28 (35%), Positives = 13/28 (46%) Frame = +3 Query: 315 ECAFPVCRDCYEYERREGTQNCPQCKTR 398 EC C DC R G + CP C+ + Sbjct: 66 ECLHRFCADCIITALRSGNKECPTCRKK 93
>RING2_HUMAN (Q99496) Ubiquitin ligase protein RING2 (EC 6.3.2.-) (RING finger| protein 2) (RING finger protein 1B) (RING1b) (RING finger protein BAP-1) (DinG protein) (Huntingtin-interacting protein 2-interacting protein 3) (HIP2-interacting protein 3) Length = 336 Score = 28.5 bits (62), Expect = 7.2 Identities = 10/28 (35%), Positives = 13/28 (46%) Frame = +3 Query: 315 ECAFPVCRDCYEYERREGTQNCPQCKTR 398 EC C DC R G + CP C+ + Sbjct: 66 ECLHRFCADCIITALRSGNKECPTCRKK 93
>RING2_BRARE (Q803I4) Ubiquitin ligase protein RING2 (EC 6.3.2.-) (RING finger| protein 2) (RING finger protein 1B) (RING1b) Length = 336 Score = 28.5 bits (62), Expect = 7.2 Identities = 10/28 (35%), Positives = 13/28 (46%) Frame = +3 Query: 315 ECAFPVCRDCYEYERREGTQNCPQCKTR 398 EC C DC R G + CP C+ + Sbjct: 66 ECLHRFCADCIITALRSGNKECPTCRKK 93
>SYTL4_HUMAN (Q96C24) Synaptotagmin-like protein 4 (Exophilin-2) (Granuphilin)| Length = 671 Score = 28.5 bits (62), Expect = 7.2 Identities = 20/71 (28%), Positives = 26/71 (36%) Frame = +3 Query: 177 RNELVVIRRDGEPGARPLKQQNRGACQICXXXXXXXXXXXXFVACNECAFPVCRDCYEYE 356 +NEL+ I+R G R + + C C C C VCRDC + Sbjct: 40 KNELLEIKRKG--AKRGSQHYSDRTCARCQESLGRLSPKTN--TCRGCNHLVCRDC-RIQ 94 Query: 357 RREGTQNCPQC 389 GT C C Sbjct: 95 ESNGTWRCKVC 105
>RING2_RAT (Q4KLY4) Ubiquitin ligase protein RING2 (EC 6.3.2.-) (RING finger| protein 2) (RING finger protein 1B) (RING1b) Length = 308 Score = 28.5 bits (62), Expect = 7.2 Identities = 10/28 (35%), Positives = 13/28 (46%) Frame = +3 Query: 315 ECAFPVCRDCYEYERREGTQNCPQCKTR 398 EC C DC R G + CP C+ + Sbjct: 66 ECLHRFCADCIITALRSGNKECPTCRKK 93
>CAH3_HUMAN (P07451) Carbonic anhydrase 3 (EC 4.2.1.1) (Carbonic anhydrase III)| (Carbonate dehydratase III) (CA-III) Length = 259 Score = 28.5 bits (62), Expect = 7.2 Identities = 10/24 (41%), Positives = 13/24 (54%) Frame = +3 Query: 318 CAFPVCRDCYEYERREGTQNCPQC 389 C FP CRD + Y+ T C +C Sbjct: 181 CLFPACRDYWTYQGSFTTPPCEEC 204
>SYH_DEHE1 (Q3ZAI8) Histidyl-tRNA synthetase (EC 6.1.1.21) (Histidine--tRNA| ligase) (HisRS) Length = 418 Score = 28.1 bits (61), Expect = 9.4 Identities = 13/38 (34%), Positives = 15/38 (39%) Frame = +3 Query: 315 ECAFPVCRDCYEYERREGTQNCPQCKTRYKRLKGCARV 428 +C C+ E R CP C Y RLK C V Sbjct: 206 DCKREECQCVAENAPRSADYLCPDCLAHYNRLKECLTV 243
>TNR14_HUMAN (Q92956) Tumor necrosis factor receptor superfamily member 14| precursor (Herpesvirus entry mediator A) (Tumor necrosis factor receptor-like 2) (TR2) Length = 283 Score = 28.1 bits (61), Expect = 9.4 Identities = 11/37 (29%), Positives = 17/37 (45%) Frame = +3 Query: 318 CAFPVCRDCYEYERREGTQNCPQCKTRYKRLKGCARV 428 C P C E E G++ CP+C Y+ + C + Sbjct: 34 CYAPALPSCKEDEYPVGSECCPKCSPGYRVKEACGEL 70
>CNOT4_MOUSE (Q8BT14) CCR4-NOT transcription complex subunit 4 (EC 6.3.2.-) (E3| ubiquitin protein ligase CNOT4) (CCR4-associated factor 4) (Potential transcriptional repressor NOT4Hp) Length = 575 Score = 28.1 bits (61), Expect = 9.4 Identities = 11/34 (32%), Positives = 16/34 (47%) Frame = +3 Query: 300 FVACNECAFPVCRDCYEYERREGTQNCPQCKTRY 401 F C C + +CR C+ R + CP C+ Y Sbjct: 28 FFPCT-CGYQICRFCWHRIRTDENGLCPACRKPY 60
>CNOT4_HUMAN (O95628) CCR4-NOT transcription complex subunit 4 (EC 6.3.2.-) (E3| ubiquitin protein ligase CNOT4) (CCR4-associated factor 4) (Potential transcriptional repressor NOT4Hp) Length = 575 Score = 28.1 bits (61), Expect = 9.4 Identities = 11/34 (32%), Positives = 16/34 (47%) Frame = +3 Query: 300 FVACNECAFPVCRDCYEYERREGTQNCPQCKTRY 401 F C C + +CR C+ R + CP C+ Y Sbjct: 28 FFPCT-CGYQICRFCWHRIRTDENGLCPACRKPY 60
>JHD2C_MOUSE (Q69ZK6) Probable JmjC domain-containing histone demethylation| protein 2C (EC 1.14.11.-) (Jumonji domain-containing protein 1C) Length = 2350 Score = 28.1 bits (61), Expect = 9.4 Identities = 8/23 (34%), Positives = 15/23 (65%) Frame = +3 Query: 309 CNECAFPVCRDCYEYERREGTQN 377 C +C F C DCY+ + R+ +++ Sbjct: 1671 CRKCGFVACLDCYKAKERKSSRD 1693 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 30,858,801 Number of Sequences: 219361 Number of extensions: 355424 Number of successful extensions: 1342 Number of sequences better than 10.0: 44 Number of HSP's better than 10.0 without gapping: 1312 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 1340 length of database: 80,573,946 effective HSP length: 101 effective length of database: 58,418,485 effective search space used: 2453576370 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
