ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bastl32g12 |
|---|---|
| Clone Library Name | barley_pub |
>ref|XM_474158.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 624 Score = 38.2 bits (19), Expect = 4.0 Identities = 19/19 (100%) Strand = Plus / Plus Query: 71 cggatcgggaggcggaggc 89 ||||||||||||||||||| Sbjct: 174 cggatcgggaggcggaggc 192
>ref|XM_465992.1| Oryza sativa (japonica cultivar-group), mRNA Length = 2924 Score = 38.2 bits (19), Expect = 4.0 Identities = 19/19 (100%) Strand = Plus / Plus Query: 69 ctcggatcgggaggcggag 87 ||||||||||||||||||| Sbjct: 86 ctcggatcgggaggcggag 104
>gb|AE009120.1| Agrobacterium tumefaciens str. C58 circular chromosome, section 146 of 256 of the complete sequence Length = 12593 Score = 38.2 bits (19), Expect = 4.0 Identities = 19/19 (100%) Strand = Plus / Minus Query: 33 gagatcagccagccggcca 51 ||||||||||||||||||| Sbjct: 4341 gagatcagccagccggcca 4323
>emb|AL606690.3|OSJN00080 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0060D06, complete sequence Length = 151506 Score = 38.2 bits (19), Expect = 4.0 Identities = 19/19 (100%) Strand = Plus / Minus Query: 71 cggatcgggaggcggaggc 89 ||||||||||||||||||| Sbjct: 118992 cggatcgggaggcggaggc 118974
>gb|CP000301.1| Rhodopseudomonas palustris BisB18, complete genome Length = 5513844 Score = 38.2 bits (19), Expect = 4.0 Identities = 19/19 (100%) Strand = Plus / Minus Query: 73 gatcgggaggcggaggccg 91 ||||||||||||||||||| Sbjct: 44818 gatcgggaggcggaggccg 44800
>gb|AE007869.1| Agrobacterium tumefaciens str. C58, complete genome Length = 2841581 Score = 38.2 bits (19), Expect = 4.0 Identities = 19/19 (100%) Strand = Plus / Minus Query: 33 gagatcagccagccggcca 51 ||||||||||||||||||| Sbjct: 1614703 gagatcagccagccggcca 1614685
>emb|BX649598.17| Zebrafish DNA sequence from clone CH211-214P12 in linkage group 18, complete sequence Length = 213741 Score = 38.2 bits (19), Expect = 4.0 Identities = 19/19 (100%) Strand = Plus / Minus Query: 70 tcggatcgggaggcggagg 88 ||||||||||||||||||| Sbjct: 134505 tcggatcgggaggcggagg 134487
>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete sequence Length = 35498469 Score = 38.2 bits (19), Expect = 4.0 Identities = 19/19 (100%) Strand = Plus / Minus Query: 71 cggatcgggaggcggaggc 89 ||||||||||||||||||| Sbjct: 33346731 cggatcgggaggcggaggc 33346713
>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete sequence Length = 35954743 Score = 38.2 bits (19), Expect = 4.0 Identities = 19/19 (100%) Strand = Plus / Plus Query: 69 ctcggatcgggaggcggag 87 ||||||||||||||||||| Sbjct: 18936464 ctcggatcgggaggcggag 18936482
>dbj|AP005845.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, PAC clone:P0461D06 Length = 112895 Score = 38.2 bits (19), Expect = 4.0 Identities = 19/19 (100%) Strand = Plus / Plus Query: 69 ctcggatcgggaggcggag 87 ||||||||||||||||||| Sbjct: 99997 ctcggatcgggaggcggag 100015
>dbj|AK111420.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-182-G08, full insert sequence Length = 977 Score = 38.2 bits (19), Expect = 4.0 Identities = 19/19 (100%) Strand = Plus / Plus Query: 71 cggatcgggaggcggaggc 89 ||||||||||||||||||| Sbjct: 205 cggatcgggaggcggaggc 223
>dbj|AK100313.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023078M04, full insert sequence Length = 2923 Score = 38.2 bits (19), Expect = 4.0 Identities = 19/19 (100%) Strand = Plus / Plus Query: 69 ctcggatcgggaggcggag 87 ||||||||||||||||||| Sbjct: 85 ctcggatcgggaggcggag 103
>dbj|AK067094.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013098P05, full insert sequence Length = 912 Score = 38.2 bits (19), Expect = 4.0 Identities = 19/19 (100%) Strand = Plus / Plus Query: 71 cggatcgggaggcggaggc 89 ||||||||||||||||||| Sbjct: 222 cggatcgggaggcggaggc 240
>emb|BX470162.9| Zebrafish DNA sequence from clone CH211-216L23 in linkage group 18, complete sequence Length = 215723 Score = 38.2 bits (19), Expect = 4.0 Identities = 19/19 (100%) Strand = Plus / Minus Query: 70 tcggatcgggaggcggagg 88 ||||||||||||||||||| Sbjct: 172187 tcggatcgggaggcggagg 172169 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 924,257 Number of Sequences: 3902068 Number of extensions: 924257 Number of successful extensions: 114297 Number of sequences better than 10.0: 14 Number of HSP's better than 10.0 without gapping: 14 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 114160 Number of HSP's gapped (non-prelim): 137 length of query: 92 length of database: 17,233,045,268 effective HSP length: 21 effective length of query: 71 effective length of database: 17,151,101,840 effective search space: 1217728230640 effective search space used: 1217728230640 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 19 (38.2 bits)
