ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name bastl32g11
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1gb|AC100511.12| Mus musculus chromosome 3, clone RP23-144N19, co... 44 0.086
2dbj|AK084550.1| Mus musculus 13 days embryo heart cDNA, RIKEN fu... 44 0.086
3gb|AC115750.9| Mus musculus chromosome 10, clone RP23-16F5, comp... 40 1.3
4gb|AC159911.7| Mus musculus 10 BAC RP23-465M5 (Roswell Park Canc... 40 1.3
5emb|CT027887.1| Xenopus tropicalis finished cDNA, clone TEgg002d18 38 5.3
6gb|AC163902.2| Mus musculus BAC clone RP23-479B18 from chromosom... 38 5.3
7gb|AC120194.6| Homo sapiens chromosome 8, clone RP11-110M13, com... 38 5.3
8gb|AC022731.4|AC022731 Homo sapiens chromosome 8, clone RP11-382... 38 5.3
9dbj|AK043593.1| Mus musculus 10 days neonate cortex cDNA, RIKEN ... 38 5.3
10dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic D... 38 5.3
11dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic D... 38 5.3
12dbj|AP004891.4| Oryza sativa (japonica cultivar-group) genomic D... 38 5.3
13dbj|AP005098.4| Oryza sativa (japonica cultivar-group) genomic D... 38 5.3
14gb|AC154769.2| Mus musculus BAC clone RP24-447K12 from 17, compl... 38 5.3
15emb|AL161851.4|CNS01RHM Human chromosome 14 DNA sequence BAC R-1... 38 5.3

>gb|AC100511.12| Mus musculus chromosome 3, clone RP23-144N19, complete sequence
          Length = 200790

 Score = 44.1 bits (22), Expect = 0.086
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                   
Query: 17    caactcacccgacagagagtgg 38
             ||||||||||||||||||||||
Sbjct: 74678 caactcacccgacagagagtgg 74657



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>dbj|AK084550.1| Mus musculus 13 days embryo heart cDNA, RIKEN full-length enriched
            library, clone:D330014D22 product:unclassifiable, full
            insert sequence
          Length = 2841

 Score = 44.1 bits (22), Expect = 0.086
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                  
Query: 17   caactcacccgacagagagtgg 38
            ||||||||||||||||||||||
Sbjct: 1940 caactcacccgacagagagtgg 1961



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>gb|AC115750.9| Mus musculus chromosome 10, clone RP23-16F5, complete sequence
          Length = 228071

 Score = 40.1 bits (20), Expect = 1.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 27     gacagagagtggggaacaga 46
              ||||||||||||||||||||
Sbjct: 200768 gacagagagtggggaacaga 200787



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>gb|AC159911.7| Mus musculus 10 BAC RP23-465M5 (Roswell Park Cancer Institute
            (C57BL/6J Female) Mouse BAC Library) complete sequence
          Length = 203420

 Score = 40.1 bits (20), Expect = 1.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 27   gacagagagtggggaacaga 46
            ||||||||||||||||||||
Sbjct: 7468 gacagagagtggggaacaga 7487



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>emb|CT027887.1| Xenopus tropicalis finished cDNA, clone TEgg002d18
          Length = 2456

 Score = 38.2 bits (19), Expect = 5.3
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                               
Query: 66   tcttccccttcgtctctct 84
            |||||||||||||||||||
Sbjct: 1326 tcttccccttcgtctctct 1308



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>gb|AC163902.2| Mus musculus BAC clone RP23-479B18 from chromosome 17, complete sequence
          Length = 190411

 Score = 38.2 bits (19), Expect = 5.3
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                 
Query: 34     agtggggaacagaaagccc 52
              |||||||||||||||||||
Sbjct: 185053 agtggggaacagaaagccc 185071



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>gb|AC120194.6| Homo sapiens chromosome 8, clone RP11-110M13, complete sequence
          Length = 153726

 Score = 38.2 bits (19), Expect = 5.3
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                 
Query: 38     gggaacagaaagccctagt 56
              |||||||||||||||||||
Sbjct: 132163 gggaacagaaagccctagt 132145



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>gb|AC022731.4|AC022731 Homo sapiens chromosome 8, clone RP11-382J12, complete sequence
          Length = 163997

 Score = 38.2 bits (19), Expect = 5.3
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 38    gggaacagaaagccctagt 56
             |||||||||||||||||||
Sbjct: 17587 gggaacagaaagccctagt 17569



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>dbj|AK043593.1| Mus musculus 10 days neonate cortex cDNA, RIKEN full-length
           enriched library, clone:A830011E02
           product:unclassifiable, full insert sequence
          Length = 3107

 Score = 38.2 bits (19), Expect = 5.3
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                              
Query: 34  agtggggaacagaaagccc 52
           |||||||||||||||||||
Sbjct: 241 agtggggaacagaaagccc 223



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>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete
               sequence
          Length = 29644043

 Score = 38.2 bits (19), Expect = 5.3
 Identities = 22/23 (95%)
 Strand = Plus / Plus

                                      
Query: 57      cttccacgctcttccccttcgtc 79
               ||||| |||||||||||||||||
Sbjct: 5991818 cttccccgctcttccccttcgtc 5991840



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>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete
                sequence
          Length = 35954743

 Score = 38.2 bits (19), Expect = 5.3
 Identities = 22/23 (95%)
 Strand = Plus / Minus

                                       
Query: 57       cttccacgctcttccccttcgtc 79
                ||||| |||||||||||||||||
Sbjct: 12425418 cttccccgctcttccccttcgtc 12425396



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>dbj|AP004891.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, PAC
              clone:P0705A04
          Length = 182468

 Score = 38.2 bits (19), Expect = 5.3
 Identities = 22/23 (95%)
 Strand = Plus / Minus

                                     
Query: 57     cttccacgctcttccccttcgtc 79
              ||||| |||||||||||||||||
Sbjct: 105555 cttccccgctcttccccttcgtc 105533



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>dbj|AP005098.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC
             clone:OSJNBa0008C11
          Length = 157205

 Score = 38.2 bits (19), Expect = 5.3
 Identities = 22/23 (95%)
 Strand = Plus / Plus

                                    
Query: 57    cttccacgctcttccccttcgtc 79
             ||||| |||||||||||||||||
Sbjct: 46988 cttccccgctcttccccttcgtc 47010



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>gb|AC154769.2| Mus musculus BAC clone RP24-447K12 from 17, complete sequence
          Length = 157247

 Score = 38.2 bits (19), Expect = 5.3
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                 
Query: 34     agtggggaacagaaagccc 52
              |||||||||||||||||||
Sbjct: 121737 agtggggaacagaaagccc 121719



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>emb|AL161851.4|CNS01RHM Human chromosome 14 DNA sequence BAC R-1078I14 of library RPCI-11 from
             chromosome 14 of Homo sapiens (Human), complete sequence
          Length = 187732

 Score = 38.2 bits (19), Expect = 5.3
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 42    acagaaagccctagtcttc 60
             |||||||||||||||||||
Sbjct: 32223 acagaaagccctagtcttc 32241


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 606,834
Number of Sequences: 3902068
Number of extensions: 606834
Number of successful extensions: 44179
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 15
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 44119
Number of HSP's gapped (non-prelim): 60
length of query: 116
length of database: 17,233,045,268
effective HSP length: 21
effective length of query: 95
effective length of database: 17,151,101,840
effective search space: 1629354674800
effective search space used: 1629354674800
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 19 (38.2 bits)
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