ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name bastl32g10
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1gb|BT016257.1| Zea mays clone Contig90 mRNA sequence 42 0.98
2ref|XM_755545.1| Ustilago maydis 521 hypothetical protein (UM044... 42 0.98
3ref|XM_503213.1| Yarrowia lipolytica CLIB122, YALI0D23969g predi... 42 0.98
4gb|AE000513.1| Deinococcus radiodurans R1 chromosome 1, complete... 42 0.98
5gb|U95180.1|ZMU95180 Zea mays endosperm specific protein mRNA, c... 42 0.98
6emb|CR382130.1| Yarrowia lipolytica chromosome D of strain CLIB1... 42 0.98
7gb|CP000094.1| Pseudomonas fluorescens PfO-1, complete genome 40 3.9
8gb|CP000359.1| Deinococcus geothermalis DSM 11300, complete genome 40 3.9
9gb|DQ115826.1| Cyanobacteria phage AS-1 contig_19 genomic sequence 40 3.9
10dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic D... 40 3.9
11gb|CP000251.1| Anaeromyxobacter dehalogenans 2CP-C, complete genome 40 3.9
12dbj|AP003991.3| Oryza sativa (japonica cultivar-group) genomic D... 40 3.9
13emb|CT573326.1| Pseudomonas entomophila str. L48 chromosome,comp... 40 3.9

>gb|BT016257.1| Zea mays clone Contig90 mRNA sequence
          Length = 1558

 Score = 42.1 bits (21), Expect = 0.98
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 169 tccttcccctcctcgtcctcg 189
           |||||||||||||||||||||
Sbjct: 38  tccttcccctcctcgtcctcg 58



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>ref|XM_755545.1| Ustilago maydis 521 hypothetical protein (UM04491.1) partial mRNA
          Length = 2244

 Score = 42.1 bits (21), Expect = 0.98
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 180  ctcgtcctcgcggcagccgga 200
            |||||||||||||||||||||
Sbjct: 1339 ctcgtcctcgcggcagccgga 1359



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>ref|XM_503213.1| Yarrowia lipolytica CLIB122, YALI0D23969g predicted mRNA
          Length = 4614

 Score = 42.1 bits (21), Expect = 0.98
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 174 cccctcctcgtcctcgcggca 194
           |||||||||||||||||||||
Sbjct: 50  cccctcctcgtcctcgcggca 70



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>gb|AE000513.1| Deinococcus radiodurans R1 chromosome 1, complete sequence
          Length = 2648638

 Score = 42.1 bits (21), Expect = 0.98
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                    
Query: 67      tcgcgcggcggcctgcacctc 87
               |||||||||||||||||||||
Sbjct: 1487495 tcgcgcggcggcctgcacctc 1487515



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>gb|U95180.1|ZMU95180 Zea mays endosperm specific protein mRNA, complete cds
          Length = 1547

 Score = 42.1 bits (21), Expect = 0.98
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 169 tccttcccctcctcgtcctcg 189
           |||||||||||||||||||||
Sbjct: 55  tccttcccctcctcgtcctcg 75



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>emb|CR382130.1| Yarrowia lipolytica chromosome D of strain CLIB122 of Yarrowia lipolytica
          Length = 3633272

 Score = 42.1 bits (21), Expect = 0.98
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                    
Query: 174     cccctcctcgtcctcgcggca 194
               |||||||||||||||||||||
Sbjct: 3134904 cccctcctcgtcctcgcggca 3134924



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>gb|CP000094.1| Pseudomonas fluorescens PfO-1, complete genome
          Length = 6438405

 Score = 40.1 bits (20), Expect = 3.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 99     ccgtgccgactccgcctcca 118
              ||||||||||||||||||||
Sbjct: 408470 ccgtgccgactccgcctcca 408489



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>gb|CP000359.1| Deinococcus geothermalis DSM 11300, complete genome
          Length = 2467205

 Score = 40.1 bits (20), Expect = 3.9
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                       
Query: 176     cctcctcgtcctcgcggcagccgg 199
               |||||||||||||||| |||||||
Sbjct: 1939755 cctcctcgtcctcgcgccagccgg 1939732



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>gb|DQ115826.1| Cyanobacteria phage AS-1 contig_19 genomic sequence
          Length = 1552

 Score = 40.1 bits (20), Expect = 3.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 90   catccgcggccgtgccgact 109
            ||||||||||||||||||||
Sbjct: 1484 catccgcggccgtgccgact 1465



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>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete
               sequence
          Length = 35954743

 Score = 40.1 bits (20), Expect = 3.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 58      tccggtgcgtcgcgcggcgg 77
               ||||||||||||||||||||
Sbjct: 7689530 tccggtgcgtcgcgcggcgg 7689549



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>gb|CP000251.1| Anaeromyxobacter dehalogenans 2CP-C, complete genome
          Length = 5013479

 Score = 40.1 bits (20), Expect = 3.9
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                          
Query: 72     cggcggcctgcacctccacatccgcggc 99
              |||||||||||||||| || ||||||||
Sbjct: 858186 cggcggcctgcacctcgacctccgcggc 858159



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>dbj|AP003991.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC
             clone:OJ1077_A12
          Length = 149089

 Score = 40.1 bits (20), Expect = 3.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 58    tccggtgcgtcgcgcggcgg 77
             ||||||||||||||||||||
Sbjct: 25795 tccggtgcgtcgcgcggcgg 25814



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>emb|CT573326.1| Pseudomonas entomophila str. L48 chromosome,complete sequence
          Length = 5888780

 Score = 40.1 bits (20), Expect = 3.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 174     cccctcctcgtcctcgcggc 193
               ||||||||||||||||||||
Sbjct: 4710064 cccctcctcgtcctcgcggc 4710083


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 1,043,051
Number of Sequences: 3902068
Number of extensions: 1043051
Number of successful extensions: 24773
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 24526
Number of HSP's gapped (non-prelim): 247
length of query: 296
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 274
effective length of database: 17,147,199,772
effective search space: 4698332737528
effective search space used: 4698332737528
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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