ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bastl32g03 |
|---|---|
| Clone Library Name | barley_pub |
>UBP14_ARATH (Q8L6Y1) Ubiquitin carboxyl-terminal hydrolase 14 (EC 3.1.2.15)| (Ubiquitin thioesterase 14) (Ubiquitin-specific-processing protease 14) (Deubiquitinating enzyme 14) (AtUBP14) (TITAN-6 protein) Length = 797 Score = 177 bits (449), Expect = 1e-44 Identities = 82/115 (71%), Positives = 99/115 (86%) Frame = +3 Query: 114 NLHKVRIPEPTNRIHKDECCVSFDTPRSEGGLYVDMNSFLGFGREHVAWNFEKSENPVYL 293 NL +V+IPEPT+RI+K ECC+SFDTPRSEGGL+VDMNSFL FG+++V+WN+EK+ NPVYL Sbjct: 7 NLSRVQIPEPTHRIYKHECCISFDTPRSEGGLFVDMNSFLAFGKDYVSWNYEKTGNPVYL 66 Query: 294 HIVQRRKPEPDETDRPLKKPTLLAIGVEGGFGEQEPEYDVTYEIVILPEFESLPF 458 HI Q RK P+ DRPLKKPTLLAIGV+GGF EPEY+ +Y IVILP+F SLPF Sbjct: 67 HIKQTRKSIPE--DRPLKKPTLLAIGVDGGFDNNEPEYEESYSIVILPDFVSLPF 119
>UBP5_MOUSE (P56399) Ubiquitin carboxyl-terminal hydrolase 5 (EC 3.1.2.15)| (Ubiquitin thioesterase 5) (Ubiquitin-specific-processing protease 5) (Deubiquitinating enzyme 5) (Isopeptidase T) Length = 858 Score = 121 bits (303), Expect = 1e-27 Identities = 60/116 (51%), Positives = 83/116 (71%), Gaps = 7/116 (6%) Frame = +3 Query: 117 LHKVRIPEPTNRIHKDECCVSFDTPRSEGGLYVDMNSFLGFGREHVAWNFEKSENPVYLH 296 L +R+P+ +R+HKDEC SFDTP SEGGLY+ MN+FLGFG+++V +F K+ VYLH Sbjct: 13 LPTIRVPKAGDRVHKDECAFSFDTPESEGGLYICMNTFLGFGKQYVERHFNKTGQRVYLH 72 Query: 297 IVQRRKPEPDET-----DRPLKKPTLLAIGVEGGFG--EQEPEYDVTYEIVILPEF 443 + + R+P+ ++T D P KKPT LAIGVEGGF E + E+D +IVILP++ Sbjct: 73 LRRTRRPKEEDTSAGTGDPPRKKPTRLAIGVEGGFDLTEDKFEFDEDVKIVILPDY 128
>UBP5_HUMAN (P45974) Ubiquitin carboxyl-terminal hydrolase 5 (EC 3.1.2.15)| (Ubiquitin thioesterase 5) (Ubiquitin-specific-processing protease 5) (Deubiquitinating enzyme 5) (Isopeptidase T) Length = 858 Score = 118 bits (296), Expect = 7e-27 Identities = 59/116 (50%), Positives = 82/116 (70%), Gaps = 7/116 (6%) Frame = +3 Query: 117 LHKVRIPEPTNRIHKDECCVSFDTPRSEGGLYVDMNSFLGFGREHVAWNFEKSENPVYLH 296 L +R+P+ +R+HKDEC SFDTP SEGGLY+ MN+FLGFG+++V +F K+ VYLH Sbjct: 13 LPTIRVPKAGDRVHKDECAFSFDTPESEGGLYICMNTFLGFGKQYVERHFNKTGQRVYLH 72 Query: 297 IVQRRKPEPDET-----DRPLKKPTLLAIGVEGGF--GEQEPEYDVTYEIVILPEF 443 + + R+P+ ++ D P KKPT LAIGVEGGF E++ E D +IVILP++ Sbjct: 73 LRRTRRPKEEDPATGTGDPPRKKPTRLAIGVEGGFDLSEEKFELDEDVKIVILPDY 128
>UBPA_DICDI (P54201) Ubiquitin carboxyl-terminal hydrolase A (EC 3.1.2.15)| (Ubiquitin thioesterase A) (Ubiquitin-specific-processing protease A) (Deubiquitinating enzyme A) Length = 837 Score = 79.0 bits (193), Expect = 6e-15 Identities = 42/116 (36%), Positives = 67/116 (57%), Gaps = 8/116 (6%) Frame = +3 Query: 117 LHKVRIPEPTNRIHKDECCVSFDTPRSEGGLYVDMNSFLGFGREHVAWNFEKSENPVYLH 296 L +++P +R+ KDECC FDTP + GL++D+ L F +++V N +K+ + +YL+ Sbjct: 7 LKNIKVPTEKSRLWKDECCYCFDTPENGEGLFIDLIGLLAFSKKYVQLNHQKTHHHLYLN 66 Query: 297 -----IVQRRKPEPD-ETDRPLKKPTLLAIGVEGGFG--EQEPEYDVTYEIVILPE 440 IV + P E K P LAIGVEGGF ++E +Y+ Y++ I P+ Sbjct: 67 FKKVAIVNEKVKSPTIENGGEEKPPKKLAIGVEGGFNVEDEEIKYEEHYKLYIFPD 122
>UBP13_HUMAN (Q92995) Ubiquitin carboxyl-terminal hydrolase 13 (EC 3.1.2.15)| (Ubiquitin thioesterase 13) (Ubiquitin-specific-processing protease 13) (Deubiquitinating enzyme 13) (Isopeptidase T-3) (ISOT-3) Length = 863 Score = 77.4 bits (189), Expect = 2e-14 Identities = 38/110 (34%), Positives = 60/110 (54%), Gaps = 5/110 (4%) Frame = +3 Query: 126 VRIPEPTNRIHKDECCVSFDTPRSEGGLYVDMNSFLGFGREHVAWNFEKSENPVYLHIVQ 305 +R+P +R++K+EC S+D+P SEGGLYV MN+FL FGREHV +F K+ VY+H+ + Sbjct: 35 IRVPRSGDRVYKNECAFSYDSPNSEGGLYVCMNTFLAFGREHVERHFRKTGQSVYMHLKR 94 Query: 306 R-----RKPEPDETDRPLKKPTLLAIGVEGGFGEQEPEYDVTYEIVILPE 440 R + L + + + EY+ ++VI P+ Sbjct: 95 HAREKVRGASGGALPKRRNSKIFLDLDTDDDLNSDDYEYEDEAKLVIFPD 144
>UBP14_SCHPO (Q11119) Ubiquitin carboxyl-terminal hydrolase 14 (EC 3.1.2.15)| (Ubiquitin thioesterase 14) (Ubiquitin-specific-processing protease 14) (Deubiquitinating enzyme 14) (UBA-domain-containing protein 2) Length = 775 Score = 38.1 bits (87), Expect = 0.011 Identities = 29/102 (28%), Positives = 50/102 (49%), Gaps = 4/102 (3%) Frame = +3 Query: 126 VRIPEPTNRIHKDECCVSFDTPRSEGGLYVDMNSFLG----FGREHVAWNFEKSENPVYL 293 V IP+ + I+++EC F++ EGG+ + + F G +H +FE++ +P+ + Sbjct: 11 VVIPDNSQVIYREECVRCFNSQDEEGGIDLCLTCFQSGCGETGLKHSLVHFEQTLHPIVV 70 Query: 294 HIVQRRKPEPDETDRPLKKPTLLAIGVEGGFGEQEPEYDVTY 419 I R+P+ D P +K T L I + E YD Y Sbjct: 71 TIA--RQPKQKINDEPPQKITKLEIRED----SDEDLYDYFY 106
>DBP5_GIBZE (Q4HY71) ATP-dependent RNA helicase DBP5 (EC 3.6.1.-)| Length = 488 Score = 31.6 bits (70), Expect = 1.1 Identities = 15/31 (48%), Positives = 18/31 (58%) Frame = +3 Query: 378 GGFGEQEPEYDVTYEIVILPEFESLPFHLLT 470 GG G QEPE+DV + L E+ PFH T Sbjct: 45 GGSGLQEPEWDVEVSLSELQNNEATPFHSAT 75
>POLR_TYMVC (P28477) RNA replicase polyprotein (EC 2.7.7.48)| Length = 1844 Score = 30.8 bits (68), Expect = 1.8 Identities = 24/79 (30%), Positives = 42/79 (53%) Frame = +3 Query: 177 SFDTPRSEGGLYVDMNSFLGFGREHVAWNFEKSENPVYLHIVQRRKPEPDETDRPLKKPT 356 S++ P S+ ++ +NS + G H++ +S PV+ ++QR P PD + + PT Sbjct: 208 SYNQP-SDAHSWLRINS-IRLGNHHLSVTILESWGPVHSLLIQRGTPPPDPSLQ--APPT 263 Query: 357 LLAIGVEGGFGEQEPEYDV 413 L+A + + QEP DV Sbjct: 264 LMASDLFRSY--QEPRLDV 280
>MURB_GEOKA (Q5L1H7) UDP-N-acetylenolpyruvoylglucosamine reductase (EC| 1.1.1.158) (UDP-N-acetylmuramate dehydrogenase) Length = 304 Score = 30.4 bits (67), Expect = 2.4 Identities = 17/45 (37%), Positives = 23/45 (51%) Frame = +3 Query: 333 DRPLKKPTLLAIGVEGGFGEQEPEYDVTYEIVILPEFESLPFHLL 467 D P+K TL+ IG + F Y+ E++ L E LPF LL Sbjct: 23 DEPMKNHTLVRIGGKADFLVWPETYEQVIEVLRLKEEYGLPFTLL 67
>PYR2_ANASP (P31329) Phycobilisome 34.5 kDa linker polypeptide,| phycoerythrocyanin-associated, rod Length = 277 Score = 30.0 bits (66), Expect = 3.1 Identities = 15/67 (22%), Positives = 31/67 (46%) Frame = -1 Query: 269 LEVPRDVLPPEPQERVHVHVQPALRPRGVEGDAALVLVDAVGGLRDADLVEVRAEEIHGR 90 L +P +LPP V P L +GD + +++A+ G + ++ R+ +++ Sbjct: 193 LNLPNGILPPTSAGTNFVSAAPTLISSATKGDNRMFVIEAIAGGLNTNVAVRRSRQVYTV 252 Query: 89 GPRRTTA 69 R +A Sbjct: 253 SYERLSA 259
>POLR_TYMV (P10358) RNA replicase polyprotein (EC 2.7.7.48)| Length = 1844 Score = 29.3 bits (64), Expect = 5.3 Identities = 23/79 (29%), Positives = 41/79 (51%) Frame = +3 Query: 177 SFDTPRSEGGLYVDMNSFLGFGREHVAWNFEKSENPVYLHIVQRRKPEPDETDRPLKKPT 356 S++ P S+ ++ +NS + G H++ +S PV+ ++QR P PD + + PT Sbjct: 208 SYNQP-SDAHSWLRINS-IRLGNHHLSVTILESWGPVHSLLIQRGTPPPDPSLQ--APPT 263 Query: 357 LLAIGVEGGFGEQEPEYDV 413 L+ + + QEP DV Sbjct: 264 LMTSDLFRSY--QEPRLDV 280
>DEXB_STRPN (Q54796) Glucan 1,6-alpha-glucosidase (EC 3.2.1.70) (Dextran| glucosidase) (Exo-1,6-alpha-glucosidase) (Glucodextranase) Length = 535 Score = 28.9 bits (63), Expect = 6.9 Identities = 13/62 (20%), Positives = 30/62 (48%) Frame = +3 Query: 165 ECCVSFDTPRSEGGLYVDMNSFLGFGREHVAWNFEKSENPVYLHIVQRRKPEPDETDRPL 344 E C + D+P + ++ D + L AW +++ YLH +++P+ + + L Sbjct: 113 EACENTDSPERDYYIWRDEPNDLDSIFSGSAWEYDEKSGQYYLHFFSKKQPDLNWENEKL 172 Query: 345 KK 350 ++ Sbjct: 173 RQ 174
>3MGH_MYCLE (O05678) Putative 3-methyladenine DNA glycosylase (EC 3.2.2.-)| Length = 214 Score = 28.9 bits (63), Expect = 6.9 Identities = 20/65 (30%), Positives = 29/65 (44%) Frame = -1 Query: 275 RLLEVPRDVLPPEPQERVHVHVQPALRPRGVEGDAALVLVDAVGGLRDADLVEVRAEEIH 96 ++ V D L +P H + + RGV A +V V+A GG+ D + A H Sbjct: 8 KICAVSADQLVVDPVVAAHRLLGATITGRGV--CAIVVEVEAYGGVPDGPWPDAAAHSYH 65 Query: 95 GRGPR 81 GR R Sbjct: 66 GRNDR 70
>TERT_HUMAN (O14746) Telomerase reverse transcriptase (EC 2.7.7.49) (Telomerase| catalytic subunit) (HEST2) (Telomerase-associated protein 2) (TP2) Length = 1132 Score = 28.9 bits (63), Expect = 6.9 Identities = 13/28 (46%), Positives = 18/28 (64%) Frame = +2 Query: 233 GVREGARRVELREVGEPRVPPHRAAPEA 316 G+R+ +RV+LRE+ E V HR A A Sbjct: 588 GIRQHLKRVQLRELSEAEVRQHREARPA 615
>LOX12_BOVIN (P27479) Arachidonate 12-lipoxygenase, 12S-type (EC 1.13.11.31)| (12-LOX) Length = 662 Score = 28.5 bits (62), Expect = 9.1 Identities = 19/61 (31%), Positives = 27/61 (44%), Gaps = 5/61 (8%) Frame = -1 Query: 434 QNNDFISHIVFRFLFTKTSLHADGEQGWL-----LQRAICLVRLRLPALHDVEVHGVLRL 270 Q+ D + H V +FT T H+ G L + A C +RL P DV + V+ Sbjct: 520 QSKDQLCHFVTMCIFTCTGQHSSTHLGQLDWYSWVPNAPCTMRLPPPTTKDVTLEKVMAT 579 Query: 269 L 267 L Sbjct: 580 L 580
>LOX15_PONPY (Q5RBE8) Arachidonate 15-lipoxygenase (EC 1.13.11.33) (Arachidonate| omega-6 lipoxygenase) (15-LOX) Length = 661 Score = 28.5 bits (62), Expect = 9.1 Identities = 19/61 (31%), Positives = 27/61 (44%), Gaps = 5/61 (8%) Frame = -1 Query: 434 QNNDFISHIVFRFLFTKTSLHAD---GEQGWL--LQRAICLVRLRLPALHDVEVHGVLRL 270 Q+ D + H V +FT T HA G+ W + A C +RL P D + V+ Sbjct: 519 QSRDQVCHFVTMCIFTCTGQHASVHLGQLDWYSWVPNAPCTMRLPPPTTKDATLETVMAT 578 Query: 269 L 267 L Sbjct: 579 L 579 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 57,464,484 Number of Sequences: 219361 Number of extensions: 1185969 Number of successful extensions: 4410 Number of sequences better than 10.0: 16 Number of HSP's better than 10.0 without gapping: 4239 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 4399 length of database: 80,573,946 effective HSP length: 103 effective length of database: 57,979,763 effective search space used: 3072927439 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
