ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bastl32f07 |
|---|---|
| Clone Library Name | barley_pub |
>IMB1_SCHPO (O13864) Importin beta-1 subunit (Karyopherin beta-1 subunit)| (Importin 95) Length = 863 Score = 62.0 bits (149), Expect = 8e-10 Identities = 34/96 (35%), Positives = 51/96 (53%) Frame = +3 Query: 171 MDITQILLAAQSPDGNLRSAAEANIKQFQEQNLPNFLLSLSVELSNDERPPESRRLAGII 350 M+ + L SPD N+R AE ++ + +++ L+ EL+ND P R AG+ Sbjct: 1 MNAGEFLAQTLSPDANVRLNAEKQLENAARTDFAQYMVLLAQELANDNSMPYIRMAAGLA 60 Query: 351 LKNSLDAKDSARKELLIQXWVSLDHSIKSQIKESLL 458 LKN++ A++ ARK Q W SL IK Q+K L Sbjct: 61 LKNAITAREEARKLEYQQLWQSLPVEIKQQVKSLAL 96
>IMB1_MOUSE (P70168) Importin beta-1 subunit (Karyopherin beta-1 subunit)| (Nuclear factor P97) (Pore targeting complex 97 kDa subunit) (PTAC97) (SCG) Length = 876 Score = 54.7 bits (130), Expect = 1e-07 Identities = 32/96 (33%), Positives = 53/96 (55%) Frame = +3 Query: 171 MDITQILLAAQSPDGNLRSAAEANIKQFQEQNLPNFLLSLSVELSNDERPPESRRLAGII 350 M++ IL SPD AA+ +++ +NLP FL+ LS L+N +R AG+ Sbjct: 1 MELITILEKTVSPDRLELEAAQKFLERAAVENLPTFLVELSRVLANPGNSQVARVAAGLQ 60 Query: 351 LKNSLDAKDSARKELLIQXWVSLDHSIKSQIKESLL 458 +KNSL +KD K Q W+++D + + ++K +L Sbjct: 61 IKNSLTSKDPDIKAQYQQRWLAIDANARREVKNYVL 96
>IMB1_HUMAN (Q14974) Importin beta-1 subunit (Karyopherin beta-1 subunit)| (Nuclear factor P97) (Importin 90) Length = 876 Score = 54.7 bits (130), Expect = 1e-07 Identities = 32/96 (33%), Positives = 53/96 (55%) Frame = +3 Query: 171 MDITQILLAAQSPDGNLRSAAEANIKQFQEQNLPNFLLSLSVELSNDERPPESRRLAGII 350 M++ IL SPD AA+ +++ +NLP FL+ LS L+N +R AG+ Sbjct: 1 MELITILEKTVSPDRLELEAAQKFLERAAVENLPTFLVELSRVLANPGNSQVARVAAGLQ 60 Query: 351 LKNSLDAKDSARKELLIQXWVSLDHSIKSQIKESLL 458 +KNSL +KD K Q W+++D + + ++K +L Sbjct: 61 IKNSLTSKDPDIKAQYQQRWLAIDANARREVKNYVL 96
>IMB1_YEAST (Q06142) Importin beta-1 subunit (Karyopherin beta-1 subunit)| (Importin 95) Length = 861 Score = 49.3 bits (116), Expect = 5e-06 Identities = 29/86 (33%), Positives = 44/86 (51%), Gaps = 1/86 (1%) Frame = +3 Query: 204 SPDGNLRSAAEANIKQFQEQNLPNFLLSLSVELSNDERPPESRRLAGIILKNSLDAKDSA 383 SPD N+R +E +K+ N F S L ++ E R LA + LKN L +KDS Sbjct: 16 SPDQNIRLTSETQLKKLSNDNFLQFAGLSSQVLIDENTKLEGRILAALTLKNELVSKDSV 75 Query: 384 RKELLIQXWVS-LDHSIKSQIKESLL 458 + + Q W++ + K+QIK + L Sbjct: 76 KTQQFAQRWITQVSPEAKNQIKTNAL 101
>IMB_DROME (O18388) Importin beta subunit (Karyopherin beta-4 subunit)| (Protein ketel) Length = 884 Score = 49.3 bits (116), Expect = 5e-06 Identities = 32/96 (33%), Positives = 45/96 (46%) Frame = +3 Query: 171 MDITQILLAAQSPDGNLRSAAEANIKQFQEQNLPNFLLSLSVELSNDERPPESRRLAGII 350 M + IL SPD N +A+ ++Q NLP FL +LS L N +R AG+ Sbjct: 7 MQLIAILEKTVSPDKNELLSAKNFLEQAAASNLPEFLKALSEILVNTANSAVARMAAGLQ 66 Query: 351 LKNSLDAKDSARKELLIQXWVSLDHSIKSQIKESLL 458 LKN L +KD + W I+ IK ++L Sbjct: 67 LKNHLTSKDEKVSQQYQDRWHQFPSEIRELIKNNIL 102
>IMB1_RAT (P52296) Importin beta-1 subunit (Karyopherin beta-1 subunit)| (Nuclear factor P97) Length = 875 Score = 44.3 bits (103), Expect = 2e-04 Identities = 29/96 (30%), Positives = 51/96 (53%) Frame = +3 Query: 171 MDITQILLAAQSPDGNLRSAAEANIKQFQEQNLPNFLLSLSVELSNDERPPESRRLAGII 350 M++ IL SPD AA+ +++ +NLP FL+ LS L+N +R AG+ Sbjct: 1 MELITILEKTVSPDRLELEAAQKFLERAAVENLPTFLVELSRVLANPGNSQVARVAAGLQ 60 Query: 351 LKNSLDAKDSARKELLIQXWVSLDHSIKSQIKESLL 458 ++ L +KD K Q W+++D + + ++K +L Sbjct: 61 IR-LLTSKDPDIKAQYQQRWLAIDANARREVKNYVL 95
>TNPO1_MOUSE (Q8BFY9) Transportin-1 (Importin beta-2) (Karyopherin beta-2)| Length = 890 Score = 39.7 bits (91), Expect = 0.004 Identities = 21/69 (30%), Positives = 42/69 (60%), Gaps = 1/69 (1%) Frame = +3 Query: 168 VMDITQILLAAQSPDGNLRSAAEANIKQF-QEQNLPNFLLSLSVELSNDERPPESRRLAG 344 + I Q+L +QSPD ++ + ++Q Q + N+L+ + +L +++ P +R L+G Sbjct: 12 LQQILQLLKESQSPDTTIQRTVQQKLEQLNQYPDFNNYLIFVLTKLKSEDEP--TRSLSG 69 Query: 345 IILKNSLDA 371 +ILKN++ A Sbjct: 70 LILKNNVKA 78
>TNPO1_HUMAN (Q92973) Transportin-1 (Importin beta-2) (Karyopherin beta-2) (M9| region interaction protein) (MIP) Length = 890 Score = 39.7 bits (91), Expect = 0.004 Identities = 21/69 (30%), Positives = 42/69 (60%), Gaps = 1/69 (1%) Frame = +3 Query: 168 VMDITQILLAAQSPDGNLRSAAEANIKQF-QEQNLPNFLLSLSVELSNDERPPESRRLAG 344 + I Q+L +QSPD ++ + ++Q Q + N+L+ + +L +++ P +R L+G Sbjct: 12 LQQILQLLKESQSPDTTIQRTVQQKLEQLNQYPDFNNYLIFVLTKLKSEDEP--TRSLSG 69 Query: 345 IILKNSLDA 371 +ILKN++ A Sbjct: 70 LILKNNVKA 78
>TNPO2_HUMAN (O14787) Transportin-2 (Karyopherin beta-2b)| Length = 897 Score = 35.0 bits (79), Expect = 0.11 Identities = 19/69 (27%), Positives = 40/69 (57%), Gaps = 1/69 (1%) Frame = +3 Query: 168 VMDITQILLAAQSPDGNLRSAAEANIKQFQE-QNLPNFLLSLSVELSNDERPPESRRLAG 344 + + Q+L +QSP+ + + +KQ + + N+L+ + L +++ P +R L+G Sbjct: 10 LQQVLQLLKDSQSPNTATQRIVQDKLKQLNQFPDFNNYLIFVLTRLKSEDEP--TRSLSG 67 Query: 345 IILKNSLDA 371 +ILKN++ A Sbjct: 68 LILKNNVKA 76
>TNPO2_MOUSE (Q99LG2) Transportin-2 (Karyopherin beta-2b)| Length = 887 Score = 35.0 bits (79), Expect = 0.11 Identities = 19/69 (27%), Positives = 40/69 (57%), Gaps = 1/69 (1%) Frame = +3 Query: 168 VMDITQILLAAQSPDGNLRSAAEANIKQFQE-QNLPNFLLSLSVELSNDERPPESRRLAG 344 + + Q+L +QSP+ + + +KQ + + N+L+ + L +++ P +R L+G Sbjct: 10 LQQVLQLLKDSQSPNTATQRIVQDKLKQLNQFPDFNNYLIFVLTRLKSEDEP--TRSLSG 67 Query: 345 IILKNSLDA 371 +ILKN++ A Sbjct: 68 LILKNNVKA 76
>IMB5_YEAST (P53067) Importin beta-5 subunit (Karyopherin beta-5 subunit) (114| kDa karyopherin) Length = 1004 Score = 32.3 bits (72), Expect = 0.69 Identities = 18/62 (29%), Positives = 32/62 (51%) Frame = +3 Query: 171 MDITQILLAAQSPDGNLRSAAEANIKQFQEQNLPNFLLSLSVELSNDERPPESRRLAGII 350 MDI ++++ AQS D + R AE + Q+ + + +L+ E ESR+ A + Sbjct: 1 MDINELIIGAQSADKHTREVAETQLLQWCDSDASQVFKALANVALQHEASLESRQFALLS 60 Query: 351 LK 356 L+ Sbjct: 61 LR 62
>PTPRV_RAT (Q64612) Receptor-type tyrosine-protein phosphatase V precursor (EC| 3.1.3.48) (Embryonic stem cell protein-tyrosine phosphatase) (ES cell phosphatase) (Osteotesticular protein-tyrosine phosphatase) (OST-PTP) Length = 1711 Score = 32.0 bits (71), Expect = 0.90 Identities = 19/40 (47%), Positives = 23/40 (57%) Frame = -3 Query: 309 HSITPPTRIGGSWEDSAPGTA*CWLLLLSEGYHLETEQLA 190 HS P R+ SW D APG + LLL YHLE++ LA Sbjct: 137 HSAGSPARLEASWSD-APGDQDSYQLLL---YHLESQTLA 172
>DPO4_THETN (P58965) DNA polymerase IV (EC 2.7.7.7) (Pol IV)| Length = 384 Score = 31.2 bits (69), Expect = 1.5 Identities = 25/78 (32%), Positives = 35/78 (44%), Gaps = 6/78 (7%) Frame = +3 Query: 240 NIKQFQEQNLPNFLLSLSVELSN-----DERPPESRRLAGIILKNSLDAKDSARKELLIQ 404 ++ + ++NL VE+ N DERP E+ R I K KD+ KELLIQ Sbjct: 199 DLLKLPQENLIELFGKTGVEIYNRIRGIDERPVETMREIKSIGKEKTLEKDTKNKELLIQ 258 Query: 405 XWVSLDHSIKSQ-IKESL 455 + + IKE L Sbjct: 259 HLKEFSEIVSEELIKERL 276
>YEL4_YEAST (P40017) Hypothetical 103.3 kDa protein in PRO3-GCD11 intergenic| region Length = 923 Score = 29.6 bits (65), Expect = 4.4 Identities = 16/56 (28%), Positives = 28/56 (50%) Frame = +3 Query: 138 PRQIRSSGATVMDITQILLAAQSPDGNLRSAAEANIKQFQEQNLPNFLLSLSVELS 305 PR++ S+G D T I + A + DG SA+ A +++N+ N + + S Sbjct: 857 PREVASNGLEADDETDIEIVAGNADGTSSSASSATSLNSKKRNVINSRFDIDFDRS 912
>DRL17_ARATH (O64790) Putative disease resistance protein At1g61300| Length = 766 Score = 28.9 bits (63), Expect = 7.6 Identities = 22/73 (30%), Positives = 36/73 (49%), Gaps = 3/73 (4%) Frame = +3 Query: 243 IKQFQE-QNLPNFLLSLSVELSNDERPPESRRLAGI--ILKNSLDAKDSARKELLIQXWV 413 +K+ Q+ QNL + ++LS ELS ++R + GI L+ D A E L WV Sbjct: 535 LKELQKLQNLQHLAITLSAELSLNQRLANLISILGIEGFLQKPFDLSFLASMENLSSLWV 594 Query: 414 SLDHSIKSQIKES 452 + + + +ES Sbjct: 595 KNSYFSEIKCRES 607
>HUWE1_MOUSE (Q7TMY8) HECT, UBA and WWE domain-containing protein 1 (EC 6.3.2.-)| (E3 ubiquitin protein ligase URE-B1) (E3Histone) Length = 4377 Score = 28.9 bits (63), Expect = 7.6 Identities = 19/62 (30%), Positives = 32/62 (51%), Gaps = 1/62 (1%) Frame = +3 Query: 129 GSIPRQIRSSGATVMDITQILLAAQSPD-GNLRSAAEANIKQFQEQNLPNFLLSLSVELS 305 G IP++++S V + TQ+L+ + + G R + EA Q + P + SLS E + Sbjct: 2781 GEIPQELQSPAEEVANSTQLLMPIELEELGPTRPSGEAETTQMELSPAPT-ITSLSPERA 2839 Query: 306 ND 311 D Sbjct: 2840 ED 2841 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 59,039,239 Number of Sequences: 219361 Number of extensions: 982742 Number of successful extensions: 2777 Number of sequences better than 10.0: 16 Number of HSP's better than 10.0 without gapping: 2727 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 2775 length of database: 80,573,946 effective HSP length: 103 effective length of database: 57,979,763 effective search space used: 3362826254 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
