ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name bastl32f05
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1NOLA1_DROME (Q7KVQ0) H/ACA ribonucleoprotein complex subunit 1-l... 28 4.0
2EGG2_SCHJA (P19469) Eggshell protein 2A precursor 27 9.0

>NOLA1_DROME (Q7KVQ0) H/ACA ribonucleoprotein complex subunit 1-like protein|
           (GCR 101 snRNP)
          Length = 237

 Score = 28.5 bits (62), Expect = 4.0
 Identities = 12/22 (54%), Positives = 12/22 (54%)
 Frame = -2

Query: 71  GLGGFNRDGNQSGGGGRKEARW 6
           G GGFNR     GGGG    RW
Sbjct: 216 GGGGFNRGRGGGGGGGGGRGRW 237



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>EGG2_SCHJA (P19469) Eggshell protein 2A precursor|
          Length = 207

 Score = 27.3 bits (59), Expect = 9.0
 Identities = 11/23 (47%), Positives = 14/23 (60%)
 Frame = -2

Query: 89  GLARAAGLGGFNRDGNQSGGGGR 21
           G  +  G GG N +GN  GGGG+
Sbjct: 165 GGGKGGGKGGGNGEGNGKGGGGK 187


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.316    0.131    0.370 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 21,460,832
Number of Sequences: 219361
Number of extensions: 191424
Number of successful extensions: 1045
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 816
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1043
length of database: 80,573,946
effective HSP length: 108
effective length of database: 56,882,958
effective search space used: 1365190992
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
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