ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bastl32f04 |
|---|---|
| Clone Library Name | barley_pub |
>GAG_MLVFP (P26805) Gag polyprotein (Core polyprotein) [Contains: Matrix| protein p15; RNA-binding phosphoprotein p12; Capsid protein p30; Nucleocapsid protein p10] Length = 537 Score = 31.6 bits (70), Expect = 0.93 Identities = 20/69 (28%), Positives = 33/69 (47%) Frame = -2 Query: 360 NSQPWGRSLPDTGRSILDGLYQTPRAFGGAEASQPNVDGDEEK*SPTLPPLLRGAARDLP 181 N++P + LPD+G ++D L + P + P+ GD + +PT GA P Sbjct: 138 NTKPRPQVLPDSGGPLIDLLTEDPPPYRDPGPPSPDGKGDSGEVAPT-----EGAPDSSP 192 Query: 180 SLTRSRSGR 154 ++R R R Sbjct: 193 MVSRLRGRR 201
>GAG_MLVFF (P26806) Gag polyprotein (Core polyprotein) [Contains: Matrix| protein p15; RNA-binding phosphoprotein p12; Capsid protein p30; Nucleocapsid protein p10] Length = 537 Score = 30.8 bits (68), Expect = 1.6 Identities = 19/66 (28%), Positives = 33/66 (50%) Frame = -2 Query: 360 NSQPWGRSLPDTGRSILDGLYQTPRAFGGAEASQPNVDGDEEK*SPTLPPLLRGAARDLP 181 N++P + LPD+G ++D L + P + P+ +GD + +PT GA P Sbjct: 138 NTKPRPQVLPDSGGPLIDLLTEDPPPYRDPGPPSPDGNGDSGEVAPT-----EGAPDPSP 192 Query: 180 SLTRSR 163 ++R R Sbjct: 193 MVSRLR 198
>SYE_ECO57 (Q8XBN2) Glutamyl-tRNA synthetase (EC 6.1.1.17) (Glutamate--tRNA| ligase) (GluRS) Length = 471 Score = 30.4 bits (67), Expect = 2.1 Identities = 14/47 (29%), Positives = 26/47 (55%), Gaps = 1/47 (2%) Frame = +2 Query: 305 PSKIERPVSGSD-LPQGWEFAPFLVTKRANSYSIIMESEMEKGRPYQ 442 P IE + G + L W+ P+ TKR + Y+ +++ +E+G Y+ Sbjct: 51 PEAIEAIMDGMNWLSLEWDEGPYFQTKRFDRYNAVIDQMLEEGTAYK 97
>SYE_SHIFL (Q83K84) Glutamyl-tRNA synthetase (EC 6.1.1.17) (Glutamate--tRNA| ligase) (GluRS) Length = 471 Score = 30.0 bits (66), Expect = 2.7 Identities = 14/47 (29%), Positives = 26/47 (55%), Gaps = 1/47 (2%) Frame = +2 Query: 305 PSKIERPVSGSD-LPQGWEFAPFLVTKRANSYSIIMESEMEKGRPYQ 442 P IE + G + L W+ P+ TKR + Y+ +++ +E+G Y+ Sbjct: 51 PEAIEAIMDGMNWLSLEWDEGPYYQTKRFDRYNAVIDQMLEEGTAYK 97
>SYE_ECOLI (P04805) Glutamyl-tRNA synthetase (EC 6.1.1.17) (Glutamate--tRNA| ligase) (GluRS) Length = 471 Score = 30.0 bits (66), Expect = 2.7 Identities = 14/47 (29%), Positives = 26/47 (55%), Gaps = 1/47 (2%) Frame = +2 Query: 305 PSKIERPVSGSD-LPQGWEFAPFLVTKRANSYSIIMESEMEKGRPYQ 442 P IE + G + L W+ P+ TKR + Y+ +++ +E+G Y+ Sbjct: 51 PEAIEAIMDGMNWLSLEWDEGPYYQTKRFDRYNAVIDQMLEEGTAYK 97
>SYE_ECOL6 (Q8FFC9) Glutamyl-tRNA synthetase (EC 6.1.1.17) (Glutamate--tRNA| ligase) (GluRS) Length = 471 Score = 30.0 bits (66), Expect = 2.7 Identities = 14/47 (29%), Positives = 26/47 (55%), Gaps = 1/47 (2%) Frame = +2 Query: 305 PSKIERPVSGSD-LPQGWEFAPFLVTKRANSYSIIMESEMEKGRPYQ 442 P IE + G + L W+ P+ TKR + Y+ +++ +E+G Y+ Sbjct: 51 PEAIEAIMDGMNWLSLEWDEGPYYQTKRFDRYNAVIDQMLEEGTAYK 97
>IL3RB_HUMAN (P32927) Cytokine receptor common beta chain precursor| (GM-CSF/IL-3/IL-5 receptor common beta-chain) (CD131 antigen) (CDw131) Length = 897 Score = 29.3 bits (64), Expect = 4.6 Identities = 19/68 (27%), Positives = 30/68 (44%) Frame = -2 Query: 381 FVTRKGANSQPWGRSLPDTGRSILDGLYQTPRAFGGAEASQPNVDGDEEK*SPTLPPLLR 202 F + + PWG P+ L+G++ P FG +E S ++ + P P Sbjct: 503 FTSGSPPHQGPWGSRFPE-----LEGVF--PVGFGDSEVSPLTIEDPKHVCDPPSGPDTT 555 Query: 201 GAARDLPS 178 AA DLP+ Sbjct: 556 PAASDLPT 563
>SYE_HAEDU (Q7VNZ3) Glutamyl-tRNA synthetase (EC 6.1.1.17) (Glutamate--tRNA| ligase) (GluRS) Length = 479 Score = 28.9 bits (63), Expect = 6.0 Identities = 10/30 (33%), Positives = 19/30 (63%) Frame = +2 Query: 353 WEFAPFLVTKRANSYSIIMESEMEKGRPYQ 442 WE P+ TKR + Y+ +++ +E+G Y+ Sbjct: 80 WEHGPYFQTKRFDRYNQVIDQMIEQGLAYR 109
>SYE_PASMU (P57906) Glutamyl-tRNA synthetase (EC 6.1.1.17) (Glutamate--tRNA| ligase) (GluRS) Length = 480 Score = 28.9 bits (63), Expect = 6.0 Identities = 10/30 (33%), Positives = 19/30 (63%) Frame = +2 Query: 353 WEFAPFLVTKRANSYSIIMESEMEKGRPYQ 442 WE P+ TKR + Y+ +++ +E+G Y+ Sbjct: 80 WEHGPYFQTKRFDRYNQVIDQMIEQGLAYR 109
>ACON_CORGL (Q8NQ98) Aconitate hydratase (EC 4.2.1.3)| Length = 939 Score = 28.5 bits (62), Expect = 7.9 Identities = 12/35 (34%), Positives = 19/35 (54%) Frame = -2 Query: 369 KGANSQPWGRSLPDTGRSILDGLYQTPRAFGGAEA 265 KG S+PW +++ G ++DG YQ + EA Sbjct: 497 KGLKSKPWVKTICAPGSQVVDGYYQRADLWKDLEA 531
>GAG_MLVAV (P03336) Gag polyprotein [Contains: Core protein p15; Inner coat| protein p12; Core shell protein p30; Nucleoprotein p10] Length = 536 Score = 28.5 bits (62), Expect = 7.9 Identities = 14/39 (35%), Positives = 21/39 (53%) Frame = -2 Query: 336 LPDTGRSILDGLYQTPRAFGGAEASQPNVDGDEEK*SPT 220 L D G ++D L + P +GG S + DGD E+ + T Sbjct: 145 LSDNGGPLIDLLSEDPPPYGGQGLSSSDGDGDREEATST 183
>GAG_MLVF5 (P26807) Gag polyprotein (Core polyprotein) [Contains: Matrix| protein p15; RNA-binding phosphoprotein p12; Capsid protein p30; Nucleocapsid protein p10] Length = 538 Score = 28.5 bits (62), Expect = 7.9 Identities = 19/69 (27%), Positives = 33/69 (47%) Frame = -2 Query: 360 NSQPWGRSLPDTGRSILDGLYQTPRAFGGAEASQPNVDGDEEK*SPTLPPLLRGAARDLP 181 N++P + LPD+G ++D L + P + S + +G + +PT GA P Sbjct: 139 NTKPRPQVLPDSGGPLIDLLTEDPPPYRDPGPSSSDGNGGSGEVAPT-----EGAPDSSP 193 Query: 180 SLTRSRSGR 154 ++R R R Sbjct: 194 MVSRLRGRR 202
>SYE_HAEIN (P43818) Glutamyl-tRNA synthetase (EC 6.1.1.17) (Glutamate--tRNA| ligase) (GluRS) Length = 480 Score = 28.5 bits (62), Expect = 7.9 Identities = 10/30 (33%), Positives = 19/30 (63%) Frame = +2 Query: 353 WEFAPFLVTKRANSYSIIMESEMEKGRPYQ 442 WE P+ TKR + Y+ +++ +E+G Y+ Sbjct: 80 WEHGPYYQTKRFDRYNQVIDEMIEQGLAYR 109
>SYE_HAEI8 (Q4QNR5) Glutamyl-tRNA synthetase (EC 6.1.1.17) (Glutamate--tRNA| ligase) (GluRS) Length = 480 Score = 28.5 bits (62), Expect = 7.9 Identities = 10/30 (33%), Positives = 19/30 (63%) Frame = +2 Query: 353 WEFAPFLVTKRANSYSIIMESEMEKGRPYQ 442 WE P+ TKR + Y+ +++ +E+G Y+ Sbjct: 80 WEHGPYYQTKRFDRYNQVIDEMIEQGLAYR 109
>ACON_COREF (Q8FTA8) Aconitate hydratase (EC 4.2.1.3)| Length = 937 Score = 28.5 bits (62), Expect = 7.9 Identities = 12/35 (34%), Positives = 19/35 (54%) Frame = -2 Query: 369 KGANSQPWGRSLPDTGRSILDGLYQTPRAFGGAEA 265 KG S+PW +++ G ++DG YQ + EA Sbjct: 497 KGLKSKPWVKTICAPGSQVVDGYYQRADLWKDLEA 531 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 51,593,019 Number of Sequences: 219361 Number of extensions: 980819 Number of successful extensions: 2406 Number of sequences better than 10.0: 15 Number of HSP's better than 10.0 without gapping: 2346 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 2406 length of database: 80,573,946 effective HSP length: 102 effective length of database: 58,199,124 effective search space used: 2677159704 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
