Clone Name | bastl32f01 |
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Clone Library Name | barley_pub |
No. | Definition | Score (bits) |
E Value |
1 | PCF11_HUMAN (O94913) Pre-mRNA cleavage complex 2 protein Pcf11 (... | 64 | 2e-10 | 2 | YD14_SCHPO (Q10237) Hypothetical protein C4G9.04c in chromosome I | 56 | 4e-08 | 3 | PCF11_YEAST (P39081) Protein PCF11 (protein 1 of CF I) | 48 | 2e-05 | 4 | YRR2_CAEEL (Q09345) Hypothetical protein R144.2 | 39 | 0.006 | 5 | PLXB3_MOUSE (Q9QY40) Plexin-B3 precursor (Plexin-6) | 29 | 7.5 | 6 | AP1M2_MOUSE (Q9WVP1) AP-1 complex subunit mu-2 (Adaptor-related ... | 28 | 9.7 |
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>PCF11_HUMAN (O94913) Pre-mRNA cleavage complex 2 protein Pcf11 (Pre-mRNA| cleavage complex II protein Pcf11) (Fragment) Length = 1654 Score = 63.9 bits (154), Expect = 2e-10 Identities = 34/91 (37%), Positives = 49/91 (53%) Frame = +3 Query: 195 YKEALAELTFNCKPIITELTIIAGQHXXXXXXXXXXXXXXXXLEVPVEQKLPSLYLLDSI 374 Y+ +L +LTFN KP I LTI+A ++ + P +KLP +YL+DSI Sbjct: 121 YQSSLEDLTFNSKPHINMLTILAEENLPFAKEIVSLIEAQTA-KAPSSEKLPVMYLMDSI 179 Query: 375 VKNIGREYVADFATRLQKVFCFAYREVHXNS 467 VKN+GREY+ F L F + +V N+ Sbjct: 180 VKNVGREYLTAFTKNLVATFICVFEKVDENT 210
>YD14_SCHPO (Q10237) Hypothetical protein C4G9.04c in chromosome I| Length = 638 Score = 56.2 bits (134), Expect = 4e-08 Identities = 37/87 (42%), Positives = 41/87 (47%) Frame = +3 Query: 195 YKEALAELTFNCKPIITELTIIAGQHXXXXXXXXXXXXXXXXLEVPVEQKLPSLYLLDSI 374 Y AL +LTFN KPII LT IA Q + P KLP+LYLLDSI Sbjct: 8 YLSALEDLTFNSKPIIHTLTYIA-QENEPYAISIVNAIEKHIQKCPPNCKLPALYLLDSI 66 Query: 375 VKNIGREYVADFATRLQKVFCFAYREV 455 KN+G Y F L F AY V Sbjct: 67 SKNLGAPYTYFFGLHLFSTFMSAYTVV 93
>PCF11_YEAST (P39081) Protein PCF11 (protein 1 of CF I)| Length = 626 Score = 47.8 bits (112), Expect = 2e-05 Identities = 30/88 (34%), Positives = 43/88 (48%) Frame = +3 Query: 183 VVGVYKEALAELTFNCKPIITELTIIAGQHXXXXXXXXXXXXXXXXLEVPVEQKLPSLYL 362 +V + L ELTFN +PIIT LT +A ++ +P +QKL + Y Sbjct: 8 IVKDFNSILEELTFNSRPIITTLTKLAEENISCAQYFVDAIESRIEKCMP-KQKLYAFYA 66 Query: 363 LDSIVKNIGREYVADFATRLQKVFCFAY 446 LDSI KN+G Y F+ L ++ Y Sbjct: 67 LDSICKNVGSPYTIYFSRNLFNLYKRTY 94
>YRR2_CAEEL (Q09345) Hypothetical protein R144.2| Length = 823 Score = 39.3 bits (90), Expect = 0.006 Identities = 30/88 (34%), Positives = 43/88 (48%), Gaps = 2/88 (2%) Frame = +3 Query: 195 YKEALAELTFNCKPIITELTIIAGQHXXXXXXXXXXXXXXXXLEVPVEQKLPSLYLLDSI 374 Y+E LAEL N K I LTI+A P QKL +Y+ DSI Sbjct: 11 YRETLAELRNNNKTQINLLTILADDFKKAAPQIVEVIERHLTTCSP-SQKLLVMYVCDSI 69 Query: 375 VKNIGR--EYVADFATRLQKVFCFAYRE 452 +KN+ + +Y A FA ++ +F A+R+ Sbjct: 70 LKNVKKPNDYDALFARKIVSMFEHAFRQ 97
>PLXB3_MOUSE (Q9QY40) Plexin-B3 precursor (Plexin-6)| Length = 1892 Score = 28.9 bits (63), Expect = 7.5 Identities = 12/31 (38%), Positives = 18/31 (58%) Frame = -2 Query: 465 CWXELPCMQNKIPSAIEWQSPLHILVQCSSQ 373 CW ELP K+P+++E S L+ C +Q Sbjct: 699 CWLELPGKLQKLPASLEETSRDSGLIHCQAQ 729
>AP1M2_MOUSE (Q9WVP1) AP-1 complex subunit mu-2 (Adaptor-related protein complex| 1 mu-2 subunit) (Mu-adaptin 2) (Adaptor protein complex AP-1 mu-2 subunit) (Golgi adaptor HA1/AP1 adaptin mu-2 subunit) (Clathrin assembly protein assembly protein complex 1 Length = 423 Score = 28.5 bits (62), Expect = 9.7 Identities = 14/43 (32%), Positives = 23/43 (53%) Frame = +3 Query: 342 KLPSLYLLDSIVKNIGREYVADFATRLQKVFCFAYREVHXNSI 470 K +LYL+ + +KN V F + +VFC ++E+ SI Sbjct: 61 KHSNLYLVATTLKNANASLVYSFLYKTVEVFCEYFKELEEESI 103 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 43,086,011 Number of Sequences: 219361 Number of extensions: 679474 Number of successful extensions: 1976 Number of sequences better than 10.0: 6 Number of HSP's better than 10.0 without gapping: 1944 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 1971 length of database: 80,573,946 effective HSP length: 103 effective length of database: 57,979,763 effective search space used: 3304846491 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)