ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bastl32e10 |
|---|---|
| Clone Library Name | barley_pub |
>MSH2_MAIZE (Q9XGC9) DNA mismatch repair protein MSH2 (MUS1)| Length = 942 Score = 210 bits (535), Expect = 1e-54 Identities = 100/119 (84%), Positives = 111/119 (93%) Frame = +2 Query: 89 MDSEDFLPEGGKLPELKLDARQAQGFISFFKKLPKDPRAIRLFDRRDYYTAHGENATFIA 268 M+ +DF PEGGKLPE KLDARQAQGFISFFKKLP+DPRA+RLFDRRDYYTAHGENATFIA Sbjct: 1 MEGDDFTPEGGKLPEFKLDARQAQGFISFFKKLPQDPRAVRLFDRRDYYTAHGENATFIA 60 Query: 269 KAYYHTMTALRQLGGNSDGISSVSVSRAMFETIARNLLLDRTDHTLELYEGSGSSWRLT 445 + YYHTM+ALRQLG +SDGI S SVS+AMFETIARN+LL+RTD TLELYEGSGS+WRLT Sbjct: 61 RTYYHTMSALRQLGSSSDGILSASVSKAMFETIARNILLERTDCTLELYEGSGSNWRLT 119
>MSH2_ARATH (O24617) DNA mismatch repair protein MSH2 (AtMsh2)| Length = 937 Score = 177 bits (448), Expect = 1e-44 Identities = 83/110 (75%), Positives = 96/110 (87%) Frame = +2 Query: 113 EGGKLPELKLDARQAQGFISFFKKLPKDPRAIRLFDRRDYYTAHGENATFIAKAYYHTMT 292 E KLPELKLDA+QAQGF+SF+K LP D RA+R FDR+DYYTAHGEN+ FIAK YYHT T Sbjct: 7 EQNKLPELKLDAKQAQGFLSFYKTLPNDTRAVRFFDRKDYYTAHGENSVFIAKTYYHTTT 66 Query: 293 ALRQLGGNSDGISSVSVSRAMFETIARNLLLDRTDHTLELYEGSGSSWRL 442 ALRQLG S+ +SSVS+SR MFETIAR+LLL+R DHT+ELYEGSGS+WRL Sbjct: 67 ALRQLGSGSNALSSVSISRNMFETIARDLLLERNDHTVELYEGSGSNWRL 116
>MSH2_NEUCR (O13396) DNA mismatch repair protein msh-2| Length = 937 Score = 75.5 bits (184), Expect = 6e-14 Identities = 41/87 (47%), Positives = 57/87 (65%), Gaps = 2/87 (2%) Frame = +2 Query: 128 PELKLDARQAQGFISFFKKLPK-DPRAIRLFDRRDYYTAHGENATFIAKAYYHTMTALRQ 304 PELK+D GFI F+K LP+ AIR+FDR D+YTAHG++ATFIA+ Y T + +RQ Sbjct: 5 PELKVD--DEHGFIRFYKSLPQLGEEAIRIFDRGDWYTAHGDDATFIARTVYKTTSVIRQ 62 Query: 305 LG-GNSDGISSVSVSRAMFETIARNLL 382 LG + G+ SV+++ +F R L Sbjct: 63 LGRSDHTGLPSVTMTVTVFRQFLREAL 89
>MSH2_MOUSE (P43247) DNA mismatch repair protein Msh2 (MutS protein homolog 2)| Length = 935 Score = 67.8 bits (164), Expect = 1e-11 Identities = 36/102 (35%), Positives = 61/102 (59%), Gaps = 2/102 (1%) Frame = +2 Query: 134 LKLDARQAQGFISFFKKLPKDPRA-IRLFDRRDYYTAHGENATFIAKAYYHTMTALRQLG 310 L+L+ GF+ FF+ +P+ P +RLFDR D+YTAHGE+A A+ + T ++ +G Sbjct: 9 LQLEGAAEAGFVRFFEGMPEKPSTTVRLFDRGDFYTAHGEDALLAAREVFKTQGVIKYMG 68 Query: 311 -GNSDGISSVSVSRAMFETIARNLLLDRTDHTLELYEGSGSS 433 S + SV +S+ FE+ ++LLL R + +E+Y+ + Sbjct: 69 PAGSKTLQSVVLSKMNFESFVKDLLLVR-QYRVEVYKNKAGN 109
>MSH2_CERAE (Q5XXB5) DNA mismatch repair protein Msh2 (MutS protein homolog 2)| Length = 933 Score = 67.8 bits (164), Expect = 1e-11 Identities = 35/97 (36%), Positives = 61/97 (62%), Gaps = 2/97 (2%) Frame = +2 Query: 134 LKLDARQAQGFISFFKKLPKDPRA-IRLFDRRDYYTAHGENATFIAKAYYHTMTALRQLG 310 L+L++ GF+ FF+ +P+ P +RLFDR D+YTAHGE+A A+ + T ++ +G Sbjct: 9 LQLESAAEVGFVRFFQSMPEKPTTTVRLFDRGDFYTAHGEDALLAAREVFKTQGVIKYMG 68 Query: 311 -GNSDGISSVSVSRAMFETIARNLLLDRTDHTLELYE 418 + + SV +S+ FE+ ++LLL R + +E+Y+ Sbjct: 69 PAGAKNLQSVVLSKMNFESFVKDLLLVR-QYRVEVYK 104
>MSH2_HUMAN (P43246) DNA mismatch repair protein Msh2 (MutS protein homolog 2)| Length = 934 Score = 67.0 bits (162), Expect = 2e-11 Identities = 35/97 (36%), Positives = 61/97 (62%), Gaps = 2/97 (2%) Frame = +2 Query: 134 LKLDARQAQGFISFFKKLPKDPRA-IRLFDRRDYYTAHGENATFIAKAYYHTMTALRQLG 310 L+L++ GF+ FF+ +P+ P +RLFDR D+YTAHGE+A A+ + T ++ +G Sbjct: 9 LQLESAAEVGFVRFFQGMPEKPTTTVRLFDRGDFYTAHGEDALLAAREVFKTQGVIKYMG 68 Query: 311 -GNSDGISSVSVSRAMFETIARNLLLDRTDHTLELYE 418 + + SV +S+ FE+ ++LLL R + +E+Y+ Sbjct: 69 PAGAKNLQSVVLSKMNFESFVKDLLLVR-QYRVEVYK 104
>MSH2_BOVIN (Q3MHE4) DNA mismatch repair protein Msh2 (MutS protein homolog 2)| Length = 934 Score = 64.3 bits (155), Expect = 1e-10 Identities = 35/97 (36%), Positives = 60/97 (61%), Gaps = 2/97 (2%) Frame = +2 Query: 134 LKLDARQAQGFISFFKKLPKDPRA-IRLFDRRDYYTAHGENATFIAKAYYHTMTALRQLG 310 L+LD+ GF+ FF+ +P+ P +RLFDR D+YTAH E+A A+ + T ++ +G Sbjct: 9 LQLDSAAEVGFVRFFQGMPEKPTTTVRLFDRGDFYTAHREDALLAAREVFKTQGVVKYMG 68 Query: 311 -GNSDGISSVSVSRAMFETIARNLLLDRTDHTLELYE 418 + + SV +S+ FE+ ++LLL R + +E+Y+ Sbjct: 69 PAGAKTLESVVLSKMNFESFVKDLLLVR-QYRVEVYK 104
>MSH2_RAT (P54275) DNA mismatch repair protein Msh2 (MutS protein homolog 2)| Length = 933 Score = 62.0 bits (149), Expect = 6e-10 Identities = 33/102 (32%), Positives = 60/102 (58%), Gaps = 2/102 (1%) Frame = +2 Query: 134 LKLDARQAQGFISFFKKLPKDPRA-IRLFDRRDYYTAHGENATFIAKAYYHTMTALRQLG 310 L+L+ GF+ FF+ +P+ P + LFDR D+YTAHGE+A A+ + T ++ +G Sbjct: 9 LQLEGAAEVGFVRFFEGMPEKPSTTVGLFDRGDFYTAHGEDALLAAREVFKTQGVIKYMG 68 Query: 311 -GNSDGISSVSVSRAMFETIARNLLLDRTDHTLELYEGSGSS 433 + + +V +S+ FE+ ++LLL R + +E+Y+ + Sbjct: 69 PAGAKTLQTVVLSKMNFESFVKDLLLVR-HYRVEVYKNKAGN 109
>MSH2_SCHPO (O74773) DNA mismatch repair protein msh2| Length = 982 Score = 55.8 bits (133), Expect = 5e-08 Identities = 26/71 (36%), Positives = 46/71 (64%) Frame = +2 Query: 170 SFFKKLPKDPRAIRLFDRRDYYTAHGENATFIAKAYYHTMTALRQLGGNSDGISSVSVSR 349 +F++K+PKD +R+FDR ++Y A GE+A+F+A+ YHT + L+ N S ++S Sbjct: 20 NFYEKMPKDTNTVRVFDRGEFYVAIGEDASFVAQNAYHTTSVLKH--HNVSNTSYCNLSP 77 Query: 350 AMFETIARNLL 382 ++F A ++L Sbjct: 78 SLFIKFAEDVL 88
>MSH2_DROME (P43248) DNA mismatch repair protein spellchecker 1| Length = 917 Score = 55.5 bits (132), Expect = 6e-08 Identities = 35/109 (32%), Positives = 54/109 (49%), Gaps = 4/109 (3%) Frame = +2 Query: 128 PELKLDARQAQGFISFFKKLPKDPRA-IRLFDRRDYYTAHG-ENATFIAKAYYHTMTALR 301 P L +D + FI F KL + P +R FD D YT HG ++ +AK Y + + Sbjct: 12 PTLNMDTNARRNFIKFHAKLGEKPATTVRFFDHTDRYTVHGSDDCELVAKIVYKSTAFIG 71 Query: 302 QL--GGNSDGISSVSVSRAMFETIARNLLLDRTDHTLELYEGSGSSWRL 442 L + + VS+S+ FE R LLL R ++ +E+Y + S W + Sbjct: 72 ALLPDDKKETLQFVSMSKGNFELAVRELLLVR-NYRVEVYVKNSSDWEI 119
>MSH2_YEAST (P25847) DNA mismatch repair protein MSH2| Length = 964 Score = 53.5 bits (127), Expect = 2e-07 Identities = 38/116 (32%), Positives = 60/116 (51%), Gaps = 11/116 (9%) Frame = +2 Query: 128 PELKL-DARQAQGFISFFKKLPKDP-RAIRLFDRRDYYTAHGENATFIAKAYYHTMTALR 301 PELK D + + F + LPK P + IRL D+ DYYT G +A F+A + YHT + L+ Sbjct: 6 PELKFSDVSEERNFYKKYTGLPKKPLKTIRLVDKGDYYTVIGSDAIFVADSVYHTQSVLK 65 Query: 302 QLGGNSDGISS---------VSVSRAMFETIARNLLLDRTDHTLELYEGSGSSWRL 442 D +++ V+VS + T+ + LLD + +E+Y+ W+L Sbjct: 66 NC--QLDPVTAKNFHEPTKYVTVSLQVLATLLKLCLLD-LGYKVEIYD---KGWKL 115
>GFI1_HUMAN (Q99684) Zinc finger protein Gfi-1 (Growth factor independence 1)| Length = 422 Score = 32.7 bits (73), Expect = 0.42 Identities = 17/36 (47%), Positives = 18/36 (50%) Frame = +1 Query: 55 PALPPSTPAGLYGQRRLLAGGGKAPGAQARCEASPG 162 PA P PA LYG +R A GG GA C A G Sbjct: 157 PAPEPGHPAALYGPKR--AAGGAGAGAPGSCSAGAG 190
>PI5PA_MOUSE (P59644) Phosphatidylinositol 4,5-bisphosphate 5-phosphatase A (EC| 3.1.3.56) Length = 1003 Score = 32.3 bits (72), Expect = 0.55 Identities = 15/40 (37%), Positives = 20/40 (50%) Frame = +1 Query: 40 SPSRSPALPPSTPAGLYGQRRLLAGGGKAPGAQARCEASP 159 SP+RSP LPP+ L AG G+ P + + SP Sbjct: 356 SPNRSPCLPPAPEVALPKPVTQAAGSGRCPSPNLQAQESP 395
>MORC2_HUMAN (Q9Y6X9) MORC family CW-type zinc finger 2 (Zinc finger CW-type| coiled-coil domain protein 1) Length = 970 Score = 32.0 bits (71), Expect = 0.71 Identities = 18/47 (38%), Positives = 24/47 (51%) Frame = +1 Query: 16 PPPAFAHISPSRSPALPPSTPAGLYGQRRLLAGGGKAPGAQARCEAS 156 P PA +PSR P+LP PA + +++ K P AR EAS Sbjct: 555 PLPAVIRNAPSRPPSLPTPRPASQPRKAPVISSTPKLPALAAREEAS 601
>ATM_GIBZE (Q4IB89) Serine/threonine-protein kinase TEL1 (EC 2.7.11.1)| (DNA-damage checkpoint kinase TEL1) (Telomere length regulation protein 1) (ATM homolog) Length = 2813 Score = 31.6 bits (70), Expect = 0.93 Identities = 20/47 (42%), Positives = 27/47 (57%) Frame = +1 Query: 52 SPALPPSTPAGLYGQRRLLAGGGKAPGAQARCEASPGFHLLLQEVAE 192 SPAL S+PA G R +GG P Q++ A+PG LL++V E Sbjct: 194 SPALTRSSPAPGSGYSR--SGGRSTPSTQSQRRAAPGEGGLLKDVLE 238
>RTN4_RAT (Q9JK11) Reticulon-4 (Neurite outgrowth inhibitor) (Nogo protein)| (Foocen) (Glut4 vesicle 20 kDa protein) Length = 1163 Score = 31.2 bits (69), Expect = 1.2 Identities = 14/22 (63%), Positives = 14/22 (63%) Frame = +1 Query: 16 PPPAFAHISPSRSPALPPSTPA 81 PPP A SP PA PPSTPA Sbjct: 141 PPPPPAGASPLAEPAAPPSTPA 162
>SEM6C_HUMAN (Q9H3T2) Semaphorin-6C precursor (Semaphorin Y) (Sema Y)| Length = 930 Score = 31.2 bits (69), Expect = 1.2 Identities = 21/65 (32%), Positives = 27/65 (41%), Gaps = 9/65 (13%) Frame = +1 Query: 7 LTFPPPAFAHISPSRSPALPPSTPAGLYGQRRLLAGGGKAP---------GAQARCEASP 159 L PP +P+R P+ G+ G RRL G +AP G +R P Sbjct: 820 LDVPPEGRCASAPARPALSAPAPRLGVGGGRRLPFSGHRAPPALLTRVPSGGPSRYSGGP 879 Query: 160 GFHLL 174 G HLL Sbjct: 880 GKHLL 884
>CUTL2_HUMAN (O14529) Homeobox protein cut-like 2 (Homeobox protein Cux-2)| (Cut-like 2) Length = 1424 Score = 30.8 bits (68), Expect = 1.6 Identities = 18/44 (40%), Positives = 19/44 (43%) Frame = +1 Query: 19 PPAFAHISPSRSPALPPSTPAGLYGQRRLLAGGGKAPGAQARCE 150 PPAF P +PA P P L G GGG A G A E Sbjct: 446 PPAFYGAKPPTAPATPAPGPEPLGGPEPADGGGGGAAGPGAEEE 489
>RASH_MSVHA (P01115) Transforming protein p29 precursor [Contains: Transforming| protein p21] Length = 241 Score = 30.4 bits (67), Expect = 2.1 Identities = 17/47 (36%), Positives = 25/47 (53%) Frame = +1 Query: 37 ISPSRSPALPPSTPAGLYGQRRLLAGGGKAPGAQARCEASPGFHLLL 177 ++P R+PALP P G +GG +APG A EA + L++ Sbjct: 18 VAPVRAPALPRPAP----GAVAPASGGARAPGLAAPVEAMTEYKLVV 60
>RTN4_MOUSE (Q99P72) Reticulon-4 (Neurite outgrowth inhibitor) (Nogo protein)| Length = 1162 Score = 30.4 bits (67), Expect = 2.1 Identities = 14/21 (66%), Positives = 14/21 (66%) Frame = +1 Query: 19 PPAFAHISPSRSPALPPSTPA 81 PPA A SP PA PPSTPA Sbjct: 138 PPAPAGASPLAEPAAPPSTPA 158
>NOTC2_MOUSE (O35516) Neurogenic locus notch homolog protein 2 precursor (Notch| 2) (Motch B) [Contains: Notch 2 extracellular truncation; Notch 2 intracellular domain] Length = 2470 Score = 30.4 bits (67), Expect = 2.1 Identities = 13/32 (40%), Positives = 17/32 (53%) Frame = +1 Query: 292 CLKATGR*L*WNLKCQC*QGYV*DHCPQPFVR 387 CL G + +CQC QG+ HC P+VR Sbjct: 198 CLNLPG-----SYRCQCGQGFTGQHCDSPYVR 224
>PI5PA_RAT (Q9JMC1) Phosphatidylinositol 4,5-bisphosphate 5-phosphatase A (EC| 3.1.3.56) (Proline-rich inositol polyphosphate 5-phosphatase) Length = 1001 Score = 30.0 bits (66), Expect = 2.7 Identities = 15/40 (37%), Positives = 20/40 (50%) Frame = +1 Query: 40 SPSRSPALPPSTPAGLYGQRRLLAGGGKAPGAQARCEASP 159 SP+RSP +PP+ L AG GK P + + SP Sbjct: 356 SPNRSPCVPPAPEVALPRPVTQGAGPGKCPSPNLQTQESP 395
>KPC2_DROME (P13677) Protein kinase C, eye isozyme (EC 2.7.11.13) (PKC)| (dPKC53E(EY)) (Protein INAC) (Inactivation no after-potential C protein) (Photoreceptor-specific PKC) (Eye-PKC) Length = 700 Score = 30.0 bits (66), Expect = 2.7 Identities = 14/36 (38%), Positives = 19/36 (52%) Frame = +1 Query: 25 AFAHISPSRSPALPPSTPAGLYGQRRLLAGGGKAPG 132 A A ++ + LPPS P+ G + AG GK PG Sbjct: 2 AAAAVATPGATVLPPSVPSAAPGAKAPAAGAGKGPG 37
>MURG_BRUME (Q8YI66) UDP-N-acetylglucosamine--N-acetylmuramyl-(pentapeptide)| pyrophosphoryl-undecaprenol N-acetylglucosamine transferase (EC 2.4.1.227) (Undecaprenyl-PP-MurNAc-pentapeptide-UDPGlcNAc GlcNAc transferase) Length = 379 Score = 29.6 bits (65), Expect = 3.5 Identities = 23/52 (44%), Positives = 27/52 (51%), Gaps = 4/52 (7%) Frame = +1 Query: 40 SPSRSPAL----PPSTPAGLYGQRRLLAGGGKAPGAQARCEASPGFHLLLQE 183 +P RSP L P TPAG + RLL GG + GAQ +A P LL E Sbjct: 166 NPVRSPVLVAAATPYTPAGKDDRFRLLVFGG-SQGAQFFSQAIPAAVALLPE 216
>MURG_BRUAB (Q57C78) UDP-N-acetylglucosamine--N-acetylmuramyl-(pentapeptide)| pyrophosphoryl-undecaprenol N-acetylglucosamine transferase (EC 2.4.1.227) (Undecaprenyl-PP-MurNAc-pentapeptide-UDPGlcNAc GlcNAc transferase) Length = 379 Score = 29.6 bits (65), Expect = 3.5 Identities = 23/52 (44%), Positives = 27/52 (51%), Gaps = 4/52 (7%) Frame = +1 Query: 40 SPSRSPAL----PPSTPAGLYGQRRLLAGGGKAPGAQARCEASPGFHLLLQE 183 +P RSP L P TPAG + RLL GG + GAQ +A P LL E Sbjct: 166 NPVRSPVLVAAATPYTPAGKDDRFRLLVFGG-SQGAQFFSQAIPAAVALLPE 216
>SOX3_HUMAN (P41225) Transcription factor SOX-3| Length = 446 Score = 29.6 bits (65), Expect = 3.5 Identities = 18/59 (30%), Positives = 25/59 (42%) Frame = +1 Query: 4 SLTFPPPAFAHISPSRSPALPPSTPAGLYGQRRLLAGGGKAPGAQARCEASPGFHLLLQ 180 SL FPP + AH R P+ P+ GL+ G P A +P + LL+ Sbjct: 27 SLPFPPDSLAH----RPPSSAPTESQGLFTVAAPAPGAPSPPATLAHLLPAPAMYSLLE 81
>DPO41_METMA (Q8PYH6) DNA polymerase IV 1 (EC 2.7.7.7) (Pol IV 1)| Length = 365 Score = 29.3 bits (64), Expect = 4.6 Identities = 20/65 (30%), Positives = 30/65 (46%) Frame = +2 Query: 179 KKLPKDPRAIRLFDRRDYYTAHGENATFIAKAYYHTMTALRQLGGNSDGISSVSVSRAMF 358 KKL +P A+ L R+D+YT+ + I ++Y GN D +SV A Sbjct: 68 KKL--NPEAVFLPVRKDFYTSVSDRIMEILRSYADP--------GNGDSFEQISVDEAFL 117 Query: 359 ETIAR 373 E+ R Sbjct: 118 ESSER 122
>Y406_METJA (Q57849) Hypothetical sugar kinase MJ0406| Length = 302 Score = 29.3 bits (64), Expect = 4.6 Identities = 25/113 (22%), Positives = 48/113 (42%), Gaps = 2/113 (1%) Frame = +2 Query: 116 GGKLPELKLDARQAQGFISFFKKLPKDPRAIRLFDRRDYYTAHGENATFIAKAYYHTMTA 295 GGK+ ++ A +I +K P+ +I++ R YY N T Sbjct: 2 GGKMEKITCVGHTALDYIFNVEKFPEPNTSIQIPSARKYYGGAAAN----------TAVG 51 Query: 296 LRQLGGNSDGISSV--SVSRAMFETIARNLLLDRTDHTLELYEGSGSSWRLTN 448 +++LG NS+ +S V + +E +NL ++ + E + +W T+ Sbjct: 52 IKKLGVNSELLSCVGYDFKNSGYERYLKNLDINISKLYYSEEEETPKAWIFTD 104
>EXTN_TOBAC (P13983) Extensin precursor (Cell wall hydroxyproline-rich| glycoprotein) Length = 620 Score = 28.9 bits (63), Expect = 6.0 Identities = 17/44 (38%), Positives = 19/44 (43%), Gaps = 6/44 (13%) Frame = +1 Query: 16 PPPAFAHISPSR------SPALPPSTPAGLYGQRRLLAGGGKAP 129 PPP H+ PSR SP + PS P YG G G P Sbjct: 92 PPPHRGHLPPSRGFNPPPSPVISPSHPPPSYGAPPPSHGPGHLP 135
>SCNAA_MOUSE (Q61180) Amiloride-sensitive sodium channel alpha-subunit| (Epithelial Na+ channel alpha subunit) (Alpha ENaC) (Nonvoltage-gated sodium channel 1 alpha subunit) (SCNEA) (Alpha NaCH) Length = 699 Score = 28.5 bits (62), Expect = 7.9 Identities = 14/27 (51%), Positives = 19/27 (70%), Gaps = 3/27 (11%) Frame = +1 Query: 4 SLTFPPPAFAHISPSRSP---ALPPST 75 +LT PPPA+A + PS SP A+P S+ Sbjct: 665 ALTAPPPAYATLGPSASPLDSAVPGSS 691
>DAZP1_MOUSE (Q9JII5) DAZ-associated protein 1 (Deleted in| azoospermia-associated protein 1) Length = 406 Score = 28.5 bits (62), Expect = 7.9 Identities = 14/36 (38%), Positives = 19/36 (52%) Frame = +1 Query: 16 PPPAFAHISPSRSPALPPSTPAGLYGQRRLLAGGGK 123 PPP+ A S+ P P P G YG + L+G G+ Sbjct: 325 PPPSQAAPDMSKPPTAQPDFPYGQYGYGQDLSGFGQ 360
>TOPI_DROME (Q9VH70) Testis-specific zinc finger protein topi (Protein| matotopetli) Length = 814 Score = 28.5 bits (62), Expect = 7.9 Identities = 12/36 (33%), Positives = 20/36 (55%), Gaps = 1/36 (2%) Frame = -3 Query: 335 HLRFHQSYRPVALRQSLCD-SMPLQ*RLHSHHEQCN 231 HLRFHQ +P ++ CD ++ L+ H +C+ Sbjct: 529 HLRFHQGVKPFVCQEENCDRKFTIRPDLNDHIRKCH 564
>SDK2_CHICK (Q8AV57) Protein sidekick-2 precursor| Length = 2177 Score = 28.5 bits (62), Expect = 7.9 Identities = 14/36 (38%), Positives = 18/36 (50%) Frame = +1 Query: 22 PAFAHISPSRSPALPPSTPAGLYGQRRLLAGGGKAP 129 P + I ++P PPS P LY LA G +AP Sbjct: 2134 PKASRIPTPQTPGNPPSQPGTLYRPPSSLAPGSRAP 2169 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 63,917,525 Number of Sequences: 219361 Number of extensions: 1288382 Number of successful extensions: 4928 Number of sequences better than 10.0: 33 Number of HSP's better than 10.0 without gapping: 4427 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 4897 length of database: 80,573,946 effective HSP length: 102 effective length of database: 58,199,124 effective search space used: 2677159704 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
