>gb|AC016555.6| Homo sapiens chromosome 5 clone CTC-358I24, complete sequence
          Length = 154848

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 474    gaggaggagaacgaagaagag 494
              |||||||||||||||||||||
Sbjct: 120317 gaggaggagaacgaagaagag 120337

>gb|AC155930.3| Mus musculus BAC clone RP23-412K9 from chromosome 7, complete sequence
          Length = 187418

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                       
Query: 153    gctgaagcagaaaccaaggtggaag 177
              |||||||||||||||| ||||||||
Sbjct: 133448 gctgaagcagaaaccatggtggaag 133472

>gb|AC126052.4| Mus musculus BAC clone RP23-277H6 from 7, complete sequence
          Length = 202833

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                      
Query: 153   gctgaagcagaaaccaaggtggaag 177
             |||||||||||||||| ||||||||
Sbjct: 58218 gctgaagcagaaaccatggtggaag 58242

>ref|XM_508308.1| PREDICTED: Pan troglodytes similar to ribosomal protein S2; 40S
           ribosomal protein S2 (LOC451053), mRNA
          Length = 2126

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 404 tctcaaggatgagattttga 423
           ||||||||||||||||||||
Sbjct: 335 tctcaaggatgagattttga 354

>gb|AC150866.2| Bos taurus  BAC CH240-290G4 (Children's Hospital Oakland Research
              Institute Bovine BAC Library (male)) complete sequence
          Length = 170911

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 136    ttctaccaaacatgtctgct 155
              ||||||||||||||||||||
Sbjct: 164831 ttctaccaaacatgtctgct 164850

>ref|XM_959619.1| Neurospora crassa OR74A hypothetical protein (NCU00551.1) partial
            mRNA
          Length = 7194

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 397  tcaaggatctcaaggatgag 416
            ||||||||||||||||||||
Sbjct: 3758 tcaaggatctcaaggatgag 3777

>ref|XM_324730.1| Neurospora crassa OR74A hypothetical protein (NCU00551.1) partial
            mRNA
          Length = 7194

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 397  tcaaggatctcaaggatgag 416
            ||||||||||||||||||||
Sbjct: 3758 tcaaggatctcaaggatgag 3777

>gb|AC127525.8| Homo sapiens chromosome 17, clone RP13-551H18, complete sequence
          Length = 108860

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 474   gaggaggagaacgaagaaga 493
             ||||||||||||||||||||
Sbjct: 10587 gaggaggagaacgaagaaga 10568

>gb|AC127337.4| Mus musculus BAC clone RP23-168F21 from 12, complete sequence
          Length = 209066

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 474   gaggaggagaacgaagaaga 493
             ||||||||||||||||||||
Sbjct: 53649 gaggaggagaacgaagaaga 53668

>gb|AC020786.20| Mus musculus chromosome 7, clone RP23-178G8, complete sequence
          Length = 227330

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 408   aaggatgagattttgagcgg 427
             ||||||||||||||||||||
Sbjct: 17852 aaggatgagattttgagcgg 17871

>gb|AC134407.6| Homo sapiens chromosome 17, clone RP11-855A2, complete sequence
          Length = 199875

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 474    gaggaggagaacgaagaaga 493
              ||||||||||||||||||||
Sbjct: 128816 gaggaggagaacgaagaaga 128835

>gb|DQ408431.1| Oryza sativa (indica cultivar-group) serine kinase mRNA, complete
           cds
          Length = 1083

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 471 gacgaggaggagaacgaagaagag 494
           |||||||||||||| |||||||||
Sbjct: 955 gacgaggaggagaaggaagaagag 978

>gb|AC093839.3| Homo sapiens BAC clone RP11-433K16 from 4, complete sequence
          Length = 162522

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 277   agaatcaaatggaggtcgag 296
             ||||||||||||||||||||
Sbjct: 77439 agaatcaaatggaggtcgag 77458

>gb|AC091884.4| Homo sapiens chromosome 5 clone RP11-109J4, complete sequence
          Length = 192149

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 295   agcaggaaaataacaaacgacctg 318
             ||||||||||||||||| ||||||
Sbjct: 48715 agcaggaaaataacaaaagacctg 48738

>ref|XM_945419.1| PREDICTED: Homo sapiens similar to ribosomal protein S2, transcript
           variant 6 (LOC650149), mRNA
          Length = 823

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 404 tctcaaggatgagattttga 423
           ||||||||||||||||||||
Sbjct: 197 tctcaaggatgagattttga 216

>ref|XM_945418.1| PREDICTED: Homo sapiens similar to ribosomal protein S2, transcript
           variant 5 (LOC650149), mRNA
          Length = 1547

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 404 tctcaaggatgagattttga 423
           ||||||||||||||||||||
Sbjct: 918 tctcaaggatgagattttga 937

>ref|XM_945417.1| PREDICTED: Homo sapiens similar to ribosomal protein S2, transcript
           variant 4 (LOC650149), mRNA
          Length = 1536

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 404 tctcaaggatgagattttga 423
           ||||||||||||||||||||
Sbjct: 918 tctcaaggatgagattttga 937

>ref|XM_945415.1| PREDICTED: Homo sapiens similar to ribosomal protein S2, transcript
           variant 3 (LOC650149), mRNA
          Length = 1548

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 404 tctcaaggatgagattttga 423
           ||||||||||||||||||||
Sbjct: 918 tctcaaggatgagattttga 937

>ref|XM_945413.1| PREDICTED: Homo sapiens similar to ribosomal protein S2, transcript
           variant 2 (LOC650149), mRNA
          Length = 739

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 404 tctcaaggatgagattttga 423
           ||||||||||||||||||||
Sbjct: 288 tctcaaggatgagattttga 307

>ref|XM_941738.1| PREDICTED: Homo sapiens similar to ribosomal protein S2, transcript
           variant 1 (LOC650149), mRNA
          Length = 1548

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 404 tctcaaggatgagattttga 423
           ||||||||||||||||||||
Sbjct: 918 tctcaaggatgagattttga 937

>ref|XM_934189.1| PREDICTED: Homo sapiens similar to ribosomal protein S2, transcript
           variant 7 (LOC91561), mRNA
          Length = 1549

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 404 tctcaaggatgagattttga 423
           ||||||||||||||||||||
Sbjct: 919 tctcaaggatgagattttga 938

>ref|XM_934185.1| PREDICTED: Homo sapiens similar to ribosomal protein S2, transcript
           variant 6 (LOC91561), mRNA
          Length = 1537

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 404 tctcaaggatgagattttga 423
           ||||||||||||||||||||
Sbjct: 919 tctcaaggatgagattttga 938

>ref|XM_934183.1| PREDICTED: Homo sapiens similar to ribosomal protein S2, transcript
           variant 5 (LOC91561), mRNA
          Length = 1548

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 404 tctcaaggatgagattttga 423
           ||||||||||||||||||||
Sbjct: 919 tctcaaggatgagattttga 938

>ref|XM_934180.1| PREDICTED: Homo sapiens similar to ribosomal protein S2, transcript
           variant 4 (LOC91561), mRNA
          Length = 1558

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 404 tctcaaggatgagattttga 423
           ||||||||||||||||||||
Sbjct: 919 tctcaaggatgagattttga 938

>ref|XM_934176.1| PREDICTED: Homo sapiens similar to ribosomal protein S2, transcript
           variant 3 (LOC91561), mRNA
          Length = 839

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 404 tctcaaggatgagattttga 423
           ||||||||||||||||||||
Sbjct: 213 tctcaaggatgagattttga 232

>ref|XM_934173.1| PREDICTED: Homo sapiens similar to ribosomal protein S2, transcript
           variant 2 (LOC91561), mRNA
          Length = 740

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 404 tctcaaggatgagattttga 423
           ||||||||||||||||||||
Sbjct: 289 tctcaaggatgagattttga 308

>ref|XM_039218.13| PREDICTED: Homo sapiens similar to ribosomal protein S2, transcript
           variant 1 (LOC91561), mRNA
          Length = 1549

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 404 tctcaaggatgagattttga 423
           ||||||||||||||||||||
Sbjct: 919 tctcaaggatgagattttga 938

>dbj|AK029911.1| Mus musculus adult male testis cDNA, RIKEN full-length enriched
            library, clone:4931437C01 product:hypothetical protein,
            full insert sequence
          Length = 5049

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 405  ctcaaggatgagattttgag 424
            ||||||||||||||||||||
Sbjct: 3878 ctcaaggatgagattttgag 3897

>emb|BX248229.14| Zebrafish DNA sequence from clone CH211-126P4 in linkage group 2,
             complete sequence
          Length = 180233

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 142   caaacatgtctgctgaagca 161
             ||||||||||||||||||||
Sbjct: 74382 caaacatgtctgctgaagca 74401

>gb|AC107956.8| Homo sapiens chromosome 11, clone RP11-452G18, complete sequence
          Length = 188571

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 404   tctcaaggatgagattttga 423
             ||||||||||||||||||||
Sbjct: 58449 tctcaaggatgagattttga 58468

>gb|AC123835.4| Mus musculus BAC clone RP23-365J20 from chromosome 9, complete sequence
          Length = 219799

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 90    tcctttctatcttcttatag 109
             ||||||||||||||||||||
Sbjct: 72244 tcctttctatcttcttatag 72263

>gb|BC084278.1| Xenopus laevis hypothetical LOC495105, mRNA (cDNA clone MGC:82357
           IMAGE:4202612), complete cds
          Length = 3733

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 475 aggaggagaacgaagaagag 494
           ||||||||||||||||||||
Sbjct: 579 aggaggagaacgaagaagag 598

>gb|AC139351.4| Mus musculus BAC clone RP24-156K15 from 8, complete sequence
          Length = 190998

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 405   ctcaaggatgagattttgag 424
             ||||||||||||||||||||
Sbjct: 98145 ctcaaggatgagattttgag 98164

>ref|NM_173431.1| Mus musculus RIKEN cDNA 1700047E16 gene (1700047E16Rik), mRNA
          Length = 7018

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 405  ctcaaggatgagattttgag 424
            ||||||||||||||||||||
Sbjct: 3913 ctcaaggatgagattttgag 3932

>emb|AJ344253.1|MMU344253 Mus musculus mRNA for Fantom protein (Ftm gene)
          Length = 7018

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 405  ctcaaggatgagattttgag 424
            ||||||||||||||||||||
Sbjct: 3913 ctcaaggatgagattttgag 3932


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 3,641,801
Number of Sequences: 3902068
Number of extensions: 3641801
Number of successful extensions: 86289
Number of sequences better than 10.0: 35
Number of HSP's better than 10.0 without gapping: 35
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 86244
Number of HSP's gapped (non-prelim): 45
length of query: 510
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 488
effective length of database: 17,147,199,772
effective search space: 8367833488736
effective search space used: 8367833488736
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)