ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name bastl32e04
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1PHOT1_ARATH (O48963) Phototropin-1 (EC 2.7.11.1) (Non-phototropi... 39 0.005
2ZN575_HUMAN (Q86XF7) Zinc finger protein 575 28 7.2

>PHOT1_ARATH (O48963) Phototropin-1 (EC 2.7.11.1) (Non-phototropic hypocotyl|
           protein 1) (Root phototropism protein 1)
          Length = 996

 Score = 38.9 bits (89), Expect = 0.005
 Identities = 19/36 (52%), Positives = 23/36 (63%), Gaps = 1/36 (2%)
 Frame = +2

Query: 329 EEPPQRPKQQ-LPRDSRGSLEVFNPSAAAAEPPRRV 433
           E+P  +P  + LPRD+RGSLEVFNPS     P   V
Sbjct: 5   EKPSTKPSSRTLPRDTRGSLEVFNPSTQLTRPDNPV 40



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>ZN575_HUMAN (Q86XF7) Zinc finger protein 575|
          Length = 245

 Score = 28.5 bits (62), Expect = 7.2
 Identities = 13/34 (38%), Positives = 17/34 (50%)
 Frame = +2

Query: 326 HEEPPQRPKQQLPRDSRGSLEVFNPSAAAAEPPR 427
           H+ PPQ+P Q  P           P+A+A  PPR
Sbjct: 29  HQGPPQKPSQSAP----------GPTASAGSPPR 52


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 36,745,930
Number of Sequences: 219361
Number of extensions: 441155
Number of successful extensions: 1406
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 1378
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1401
length of database: 80,573,946
effective HSP length: 101
effective length of database: 58,418,485
effective search space used: 2453576370
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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