ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bastl32d10 |
|---|---|
| Clone Library Name | barley_pub |
| No. | Definition | Score (bits) |
E Value |
1 | IF41_WHEAT (Q03387) Eukaryotic initiation factor iso-4F subunit ... | 161 | 7e-40 | 2 | BSN_RAT (O88778) Bassoon protein | 30 | 2.3 | 3 | VIME_RAT (P31000) Vimentin | 30 | 3.0 | 4 | VIME_PANTR (Q5R1W8) Vimentin | 30 | 3.0 | 5 | VIME_MOUSE (P20152) Vimentin | 30 | 3.0 | 6 | VIME_MESAU (P02544) Vimentin | 30 | 3.0 | 7 | VIME_MACFA (Q4R4X4) Vimentin | 30 | 3.0 | 8 | VIME_HUMAN (P08670) Vimentin | 30 | 3.0 | 9 | VIME_CERAE (P84198) Vimentin | 30 | 3.0 | 10 | VIME_CRIGR (P48670) Vimentin (Fragment) | 30 | 3.0 | 11 | VIMB_CARAU (P48673) Vimentin beta | 30 | 3.0 | 12 | VIME_CHICK (P09654) Vimentin | 29 | 5.1 | 13 | CEA_CITFR (P04480) Colicin-A | 29 | 5.1 |
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>IF41_WHEAT (Q03387) Eukaryotic initiation factor iso-4F subunit p82-34| (eIF-(iso)4F p82-34) Length = 788 Score = 161 bits (408), Expect = 7e-40 Identities = 82/102 (80%), Positives = 87/102 (85%) Frame = +2 Query: 155 MTTDQPVISLXXXXXXXXXXXXXLFAPAFAVAASGSGDFLRPHGGGASGVSRIGDLHFET 334 MTTDQPVISL LFAPAFAVAASGSGDFLRPHGGGASGVSRIGDLH E+ Sbjct: 1 MTTDQPVISLRPGGGGGGPRGGRLFAPAFAVAASGSGDFLRPHGGGASGVSRIGDLHSES 60 Query: 335 RERIRYSRDQLLDLRKITDISEAILRLQQEIEAELHGDDQSW 460 RER+RYSRDQLLDLRKITD++E ILRLQQEIEAEL+GDDQSW Sbjct: 61 RERVRYSRDQLLDLRKITDVTEQILRLQQEIEAELNGDDQSW 102
>BSN_RAT (O88778) Bassoon protein| Length = 3937 Score = 30.4 bits (67), Expect = 2.3 Identities = 37/141 (26%), Positives = 49/141 (34%), Gaps = 7/141 (4%) Frame = +2 Query: 35 PPREG----GKKXXXXXXXXXXXXR-RFPVDRAAAVPWSGSGPSAMTTDQPVISLXXXXX 199 PP EG GK R P A P S + P A+ + PV Sbjct: 2266 PPAEGPVYLGKPAAAKASGAGGPPRPELPAGGAREEPLSTTAPPAVIKEAPVAQ------ 2319 Query: 200 XXXXXXXXLFAPAFAVAASGSGDFLRPHGGGASGVSRIGDLHFETRERIRYSRDQLLDLR 379 APA +GD G G G + +R R ++QLL L Sbjct: 2320 ----------APAPPPGQKPAGDAAAGSGSGVLGRPVMEKEEASQEDRQRKQQEQLLQLE 2369 Query: 380 KITDISEAI--LRLQQEIEAE 436 + E + LRLQ+E+E E Sbjct: 2370 RERVELEKLRQLRLQEELERE 2390
>VIME_RAT (P31000) Vimentin| Length = 465 Score = 30.0 bits (66), Expect = 3.0 Identities = 16/52 (30%), Positives = 31/52 (59%), Gaps = 5/52 (9%) Frame = +2 Query: 299 GVSRIGDLHFETRERIRYSRDQLLDLRKITDI-----SEAILRLQQEIEAEL 439 G SR+GDL+ E +R DQL + + ++ +E I+RL+++++ E+ Sbjct: 141 GKSRLGDLYEEEMRELRRQVDQLTNDKARVEVERDNLAEDIMRLREKLQEEM 192
>VIME_PANTR (Q5R1W8) Vimentin| Length = 465 Score = 30.0 bits (66), Expect = 3.0 Identities = 16/52 (30%), Positives = 31/52 (59%), Gaps = 5/52 (9%) Frame = +2 Query: 299 GVSRIGDLHFETRERIRYSRDQLLDLRKITDI-----SEAILRLQQEIEAEL 439 G SR+GDL+ E +R DQL + + ++ +E I+RL+++++ E+ Sbjct: 141 GKSRLGDLYEEEMRELRRQVDQLTNDKARVEVERDNLAEDIMRLREKLQEEM 192
>VIME_MOUSE (P20152) Vimentin| Length = 465 Score = 30.0 bits (66), Expect = 3.0 Identities = 16/52 (30%), Positives = 31/52 (59%), Gaps = 5/52 (9%) Frame = +2 Query: 299 GVSRIGDLHFETRERIRYSRDQLLDLRKITDI-----SEAILRLQQEIEAEL 439 G SR+GDL+ E +R DQL + + ++ +E I+RL+++++ E+ Sbjct: 141 GKSRLGDLYEEEMRELRRQVDQLTNDKARVEVERDNLAEDIMRLREKLQEEM 192
>VIME_MESAU (P02544) Vimentin| Length = 464 Score = 30.0 bits (66), Expect = 3.0 Identities = 16/52 (30%), Positives = 31/52 (59%), Gaps = 5/52 (9%) Frame = +2 Query: 299 GVSRIGDLHFETRERIRYSRDQLLDLRKITDI-----SEAILRLQQEIEAEL 439 G SR+GDL+ E +R DQL + + ++ +E I+RL+++++ E+ Sbjct: 140 GKSRLGDLYEEEMRELRRQVDQLTNDKARVEVERDNLAEDIMRLREKLQEEM 191
>VIME_MACFA (Q4R4X4) Vimentin| Length = 465 Score = 30.0 bits (66), Expect = 3.0 Identities = 16/52 (30%), Positives = 31/52 (59%), Gaps = 5/52 (9%) Frame = +2 Query: 299 GVSRIGDLHFETRERIRYSRDQLLDLRKITDI-----SEAILRLQQEIEAEL 439 G SR+GDL+ E +R DQL + + ++ +E I+RL+++++ E+ Sbjct: 141 GKSRLGDLYEEEMRELRRQVDQLTNDKARVEVERDNLTEDIMRLREKLQEEM 192
>VIME_HUMAN (P08670) Vimentin| Length = 465 Score = 30.0 bits (66), Expect = 3.0 Identities = 16/52 (30%), Positives = 31/52 (59%), Gaps = 5/52 (9%) Frame = +2 Query: 299 GVSRIGDLHFETRERIRYSRDQLLDLRKITDI-----SEAILRLQQEIEAEL 439 G SR+GDL+ E +R DQL + + ++ +E I+RL+++++ E+ Sbjct: 141 GKSRLGDLYEEEMRELRRQVDQLTNDKARVEVERDNLAEDIMRLREKLQEEM 192
>VIME_CERAE (P84198) Vimentin| Length = 465 Score = 30.0 bits (66), Expect = 3.0 Identities = 16/52 (30%), Positives = 31/52 (59%), Gaps = 5/52 (9%) Frame = +2 Query: 299 GVSRIGDLHFETRERIRYSRDQLLDLRKITDI-----SEAILRLQQEIEAEL 439 G SR+GDL+ E +R DQL + + ++ +E I+RL+++++ E+ Sbjct: 141 GKSRLGDLYEEEMRELRRQVDQLTNDKARVEVERDNLTEDIMRLREKLQEEM 192
>VIME_CRIGR (P48670) Vimentin (Fragment)| Length = 448 Score = 30.0 bits (66), Expect = 3.0 Identities = 16/52 (30%), Positives = 31/52 (59%), Gaps = 5/52 (9%) Frame = +2 Query: 299 GVSRIGDLHFETRERIRYSRDQLLDLRKITDI-----SEAILRLQQEIEAEL 439 G SR+GDL+ E +R DQL + + ++ +E I+RL+++++ E+ Sbjct: 124 GKSRLGDLYEEEMRELRRQVDQLTNDKARVEVERDNLAEDIIRLREKLQEEM 175
>VIMB_CARAU (P48673) Vimentin beta| Length = 450 Score = 30.0 bits (66), Expect = 3.0 Identities = 16/52 (30%), Positives = 30/52 (57%), Gaps = 5/52 (9%) Frame = +2 Query: 299 GVSRIGDLHFETRERIRYSRDQLLDLRKITDI-----SEAILRLQQEIEAEL 439 G SR+GDL+ + +R DQL++ + ++ E I RL+Q+++ E+ Sbjct: 128 GSSRVGDLYEDEMRELRRQVDQLINEKASVEVDRDNLGENIERLRQKLQEEM 179
>VIME_CHICK (P09654) Vimentin| Length = 459 Score = 29.3 bits (64), Expect = 5.1 Identities = 15/52 (28%), Positives = 31/52 (59%), Gaps = 5/52 (9%) Frame = +2 Query: 299 GVSRIGDLHFETRERIRYSRDQLLDLRKITDI-----SEAILRLQQEIEAEL 439 G SR+GDL+ E +R DQL + + ++ ++ I+RL+++++ E+ Sbjct: 135 GTSRLGDLYEEEMRDVRRQVDQLTNDKARVEVERDNLADDIMRLREKLQEEM 186
>CEA_CITFR (P04480) Colicin-A| Length = 592 Score = 29.3 bits (64), Expect = 5.1 Identities = 15/37 (40%), Positives = 18/37 (48%) Frame = -1 Query: 174 TGWSVVMAEGPEPDQGTAAARSTGNRRGAGEEIAEES 64 TGWS GPEP G + S G+ RG + ES Sbjct: 13 TGWSSERGSGPEPG-GGSHGNSGGHDRGDSSNVGNES 48 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 50,532,522 Number of Sequences: 219361 Number of extensions: 807154 Number of successful extensions: 3042 Number of sequences better than 10.0: 13 Number of HSP's better than 10.0 without gapping: 2918 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 3041 length of database: 80,573,946 effective HSP length: 102 effective length of database: 58,199,124 effective search space used: 2968155324 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
