ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
menu 
| Clone Name | bastl32d09 |
|---|---|
| Clone Library Name | barley_pub |
>ref|XM_450107.1| Oryza sativa (japonica cultivar-group), mRNA Length = 3007 Score = 182 bits (92), Expect = 7e-43 Identities = 129/140 (92%), Gaps = 1/140 (0%) Strand = Plus / Plus Query: 307 gaggaggacgggacgctctccgcgacggcagctatggcgagggacgccgccgtgctgttc 366 |||||||| |||| |||||||| ||||| |||||||| || |||||||||||||||||| Sbjct: 265 gaggaggaagggatgctctccgtcacggccgctatggccagagacgccgccgtgctgttc 324 Query: 367 cagagccgccggtacgccgagtgcgccgaggtgctcgcgcagctcctgctcaagaaggag 426 ||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||| Sbjct: 325 cagagccgccgctacgccgactgcgccgaggtgctcgcgcagctcctgctcaagaaggag 384 Query: 427 ggtgacccc-aggtccttca 445 || |||||| |||||||||| Sbjct: 385 ggcgaccccaaggtccttca 404
>dbj|AK103665.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033135J15, full insert sequence Length = 3007 Score = 182 bits (92), Expect = 7e-43 Identities = 129/140 (92%), Gaps = 1/140 (0%) Strand = Plus / Plus Query: 307 gaggaggacgggacgctctccgcgacggcagctatggcgagggacgccgccgtgctgttc 366 |||||||| |||| |||||||| ||||| |||||||| || |||||||||||||||||| Sbjct: 265 gaggaggaagggatgctctccgtcacggccgctatggccagagacgccgccgtgctgttc 324 Query: 367 cagagccgccggtacgccgagtgcgccgaggtgctcgcgcagctcctgctcaagaaggag 426 ||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||| Sbjct: 325 cagagccgccgctacgccgactgcgccgaggtgctcgcgcagctcctgctcaagaaggag 384 Query: 427 ggtgacccc-aggtccttca 445 || |||||| |||||||||| Sbjct: 385 ggcgaccccaaggtccttca 404
>dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, complete sequence Length = 22696651 Score = 178 bits (90), Expect = 1e-41 Identities = 120/130 (92%) Strand = Plus / Plus Query: 307 gaggaggacgggacgctctccgcgacggcagctatggcgagggacgccgccgtgctgttc 366 |||||||| |||| |||||||| ||||| |||||||| || |||||||||||||||||| Sbjct: 1727075 gaggaggaagggatgctctccgtcacggccgctatggccagagacgccgccgtgctgttc 1727134 Query: 367 cagagccgccggtacgccgagtgcgccgaggtgctcgcgcagctcctgctcaagaaggag 426 ||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||| Sbjct: 1727135 cagagccgccgctacgccgactgcgccgaggtgctcgcgcagctcctgctcaagaaggag 1727194 Query: 427 ggtgacccca 436 || ||||||| Sbjct: 1727195 ggcgacccca 1727204
>dbj|AP006062.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, PAC clone:P0415D04 Length = 176627 Score = 178 bits (90), Expect = 1e-41 Identities = 120/130 (92%) Strand = Plus / Plus Query: 307 gaggaggacgggacgctctccgcgacggcagctatggcgagggacgccgccgtgctgttc 366 |||||||| |||| |||||||| ||||| |||||||| || |||||||||||||||||| Sbjct: 113647 gaggaggaagggatgctctccgtcacggccgctatggccagagacgccgccgtgctgttc 113706 Query: 367 cagagccgccggtacgccgagtgcgccgaggtgctcgcgcagctcctgctcaagaaggag 426 ||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||| Sbjct: 113707 cagagccgccgctacgccgactgcgccgaggtgctcgcgcagctcctgctcaagaaggag 113766 Query: 427 ggtgacccca 436 || ||||||| Sbjct: 113767 ggcgacccca 113776
>ref|NG_002690.1| Homo sapiens Prader-Willi/Angelman syndrome region (PWSAS@) on chromosome 15 Length = 755217 Score = 44.1 bits (22), Expect = 0.39 Identities = 22/22 (100%) Strand = Plus / Plus Query: 267 gccgaaggaggcgccgccgccc 288 |||||||||||||||||||||| Sbjct: 657862 gccgaaggaggcgccgccgccc 657883
>gb|BC002582.2| Homo sapiens ubiquitin protein ligase E3A (human papilloma virus E6-associated protein, Angelman syndrome), transcript variant 3, mRNA (cDNA clone MGC:2086 IMAGE:3160225), complete cds Length = 3331 Score = 44.1 bits (22), Expect = 0.39 Identities = 22/22 (100%) Strand = Plus / Minus Query: 267 gccgaaggaggcgccgccgccc 288 |||||||||||||||||||||| Sbjct: 211 gccgaaggaggcgccgccgccc 190
>gb|AC124997.4| Homo sapiens chromosome 15, clone RP11-466L14, complete sequence Length = 179810 Score = 44.1 bits (22), Expect = 0.39 Identities = 22/22 (100%) Strand = Plus / Plus Query: 267 gccgaaggaggcgccgccgccc 288 |||||||||||||||||||||| Sbjct: 82455 gccgaaggaggcgccgccgccc 82476
>ref|NM_130839.1| Homo sapiens ubiquitin protein ligase E3A (human papilloma virus E6-associated protein, Angelman syndrome) (UBE3A), transcript variant 3, mRNA Length = 5164 Score = 44.1 bits (22), Expect = 0.39 Identities = 22/22 (100%) Strand = Plus / Minus Query: 267 gccgaaggaggcgccgccgccc 288 |||||||||||||||||||||| Sbjct: 211 gccgaaggaggcgccgccgccc 190
>dbj|AK056239.1| Homo sapiens cDNA FLJ31677 fis, clone NT2RI2005116, highly similar to UBIQUITIN-PROTEIN LIGASE E3A (EC 6.3.2.-) Length = 1909 Score = 44.1 bits (22), Expect = 0.39 Identities = 22/22 (100%) Strand = Plus / Minus Query: 267 gccgaaggaggcgccgccgccc 288 |||||||||||||||||||||| Sbjct: 226 gccgaaggaggcgccgccgccc 205
>gb|DQ341315.2| Ascochyta lentis strain ATCC 96419 MAT1-2-1 (MAT1-2-1) gene, complete cds Length = 3638 Score = 44.1 bits (22), Expect = 0.39 Identities = 25/26 (96%) Strand = Plus / Minus Query: 146 aaaccctaccgccagtgctccagttc 171 |||||||||||||||||||| ||||| Sbjct: 3133 aaaccctaccgccagtgctcgagttc 3108
>gb|AC124311.7| Homo sapiens chromosome 15, clone RP11-479F18, complete sequence Length = 142745 Score = 44.1 bits (22), Expect = 0.39 Identities = 22/22 (100%) Strand = Plus / Plus Query: 267 gccgaaggaggcgccgccgccc 288 |||||||||||||||||||||| Sbjct: 8134 gccgaaggaggcgccgccgccc 8155
>gb|AF009339.1|HSUBE6AP1 Homo sapiens E6-AP ubiquitin-protein ligase (UBE3A) exon 1 sequence Length = 539 Score = 44.1 bits (22), Expect = 0.39 Identities = 22/22 (100%) Strand = Plus / Minus Query: 267 gccgaaggaggcgccgccgccc 288 |||||||||||||||||||||| Sbjct: 257 gccgaaggaggcgccgccgccc 236
>gb|AC004600.2|AC004600 Homo sapiens Chromosome 15q11-q13 PAC clone pDJ373b1 containing Angelman Syndrome gene (UBE3A), complete sequence Length = 133863 Score = 44.1 bits (22), Expect = 0.39 Identities = 22/22 (100%) Strand = Plus / Plus Query: 267 gccgaaggaggcgccgccgccc 288 |||||||||||||||||||||| Sbjct: 111398 gccgaaggaggcgccgccgccc 111419
>gb|AC004259.1|AC004259 Human Chromosome 15q11-q13 PAC clone pDJ14i12 containing Angelman Syndrome gene (UBE3A), complete sequence Length = 118684 Score = 44.1 bits (22), Expect = 0.39 Identities = 22/22 (100%) Strand = Plus / Plus Query: 267 gccgaaggaggcgccgccgccc 288 |||||||||||||||||||||| Sbjct: 90541 gccgaaggaggcgccgccgccc 90562
>gb|AC091775.10| Oryza sativa chromosome 3 BAC OSJNBa0004G17 genomic sequence, complete sequence Length = 139074 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Minus Query: 24 ctccctcttctctctctatcc 44 ||||||||||||||||||||| Sbjct: 135608 ctccctcttctctctctatcc 135588
>ref|NM_185464.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1533 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Minus Query: 262 gcggcgccgaaggaggcgccg 282 ||||||||||||||||||||| Sbjct: 148 gcggcgccgaaggaggcgccg 128
>gb|AC137618.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone OSJNBa0090H02, complete sequence Length = 135231 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Minus Query: 112 cgcgtccaaaccctagctagc 132 ||||||||||||||||||||| Sbjct: 116379 cgcgtccaaaccctagctagc 116359
>gb|AC111275.4| Rattus norvegicus 4 BAC CH230-49L22 (Children's Hospital Oakland Research Institute) complete sequence Length = 227595 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Plus Query: 278 cgccgccgccccagccacagc 298 ||||||||||||||||||||| Sbjct: 207217 cgccgccgccccagccacagc 207237
>gb|AC104279.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone OJ1393_A07, complete sequence Length = 159932 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Minus Query: 112 cgcgtccaaaccctagctagc 132 ||||||||||||||||||||| Sbjct: 18834 cgcgtccaaaccctagctagc 18814
>gb|CP000360.1| Acidobacteria bacterium Ellin345, complete genome Length = 5650368 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Minus Query: 389 gcgccgaggtgctcgcgcagc 409 ||||||||||||||||||||| Sbjct: 4904911 gcgccgaggtgctcgcgcagc 4904891
>gb|DQ249342.1| Streptomyces hygroscopicus subsp. duamyceticus strain JCM4427 unknown polyketide biosynthetic gene cluster, partial sequence; and AHBA biosynthesis gene cluster, complete sequence Length = 55488 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Plus Query: 383 ccgagtgcgccgaggtgctcg 403 ||||||||||||||||||||| Sbjct: 42350 ccgagtgcgccgaggtgctcg 42370
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 Length = 36102668 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Plus Query: 24 ctccctcttctctctctatcc 44 ||||||||||||||||||||| Sbjct: 28017499 ctccctcttctctctctatcc 28017519 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 24 ctccctcttctctctctatc 43 |||||||||||||||||||| Sbjct: 27036862 ctccctcttctctctctatc 27036843
>gb|AC133334.8| Oryza sativa chromosome 3 BAC OSJNBa0004L11 genomic sequence, complete sequence Length = 133889 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Minus Query: 24 ctccctcttctctctctatcc 44 ||||||||||||||||||||| Sbjct: 7527 ctccctcttctctctctatcc 7507
>gb|AC112030.4| Rattus norvegicus 4 BAC CH230-100K8 (Children's Hospital Oakland Research Institute) complete sequence Length = 237374 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Plus Query: 278 cgccgccgccccagccacagc 298 ||||||||||||||||||||| Sbjct: 17476 cgccgccgccccagccacagc 17496
>gb|AC093620.3| Homo sapiens BAC clone RP13-901C16 from 7, complete sequence Length = 71183 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Plus Query: 273 ggaggcgccgccgccccagcc 293 ||||||||||||||||||||| Sbjct: 42810 ggaggcgccgccgccccagcc 42830
>emb|AL021578.4|HS453C12 Human DNA sequence from clone RP3-453C12 on chromosome 20q12-13.12 Contains the MATN4 gene for matrilin 4, the RBPSUHL gene for recombining binding protein suppressor of hairless (Drosophila)-like, the SDC4 (syndecan 4 (amphiglycan, ryudocan)) gene, the C20orf169 gene for a novel protein similar to Drosophila CG11753, the C20orf10 gene for p53 response element (clg01), the C20orf35 gene for uncharacterized hypothalamus protein, the C20orf10 gene, the PIGT gene for phosphatidyl inositol glycan class T, an NADH dehydrogenase (ubiquinone) 1 beta subcomplex 4 (NDUFB4) pseudogene and CpG islands, complete sequence Length = 147620 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Plus Query: 422 aggagggtgaccccaggtcct 442 ||||||||||||||||||||| Sbjct: 54674 aggagggtgaccccaggtcct 54694
>gb|AF506522.2| Streptomyces hygroscopicus AHBA biosynthetic gene cluster, partial sequence Length = 22131 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Plus Query: 383 ccgagtgcgccgaggtgctcg 403 ||||||||||||||||||||| Sbjct: 18641 ccgagtgcgccgaggtgctcg 18661
>emb|BX640445.1| Bordetella bronchiseptica strain RB50, complete genome; segment 9/16 Length = 348706 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Plus Query: 261 cgcggcgccgaaggaggcgcc 281 ||||||||||||||||||||| Sbjct: 42186 cgcggcgccgaaggaggcgcc 42206
>emb|BX640427.1| Bordetella parapertussis strain 12822, complete genome; segment 5/14 Length = 348997 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Plus Query: 261 cgcggcgccgaaggaggcgcc 281 ||||||||||||||||||||| Sbjct: 298873 cgcggcgccgaaggaggcgcc 298893
>gb|AC092562.4| Papio hamadryas BAC RP41-285I13 (Rosewell Park Cancer Institute BAC Library) complete sequence Length = 183586 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Minus Query: 268 ccgaaggaggcgccgccgccc 288 ||||||||||||||||||||| Sbjct: 130835 ccgaaggaggcgccgccgccc 130815
>ref|XM_938007.1| PREDICTED: Homo sapiens microtubule associated serine/threonine kinase 3 (MAST3), mRNA Length = 5887 Score = 42.1 bits (21), Expect = 1.5 Identities = 24/25 (96%) Strand = Plus / Minus Query: 254 tggagcccgcggcgccgaaggaggc 278 ||||||||||||||||| ||||||| Sbjct: 38 tggagcccgcggcgccgcaggaggc 14
>ref|XM_038150.5| PREDICTED: Homo sapiens microtubule associated serine/threonine kinase 3 (MAST3), mRNA Length = 5890 Score = 42.1 bits (21), Expect = 1.5 Identities = 24/25 (96%) Strand = Plus / Minus Query: 254 tggagcccgcggcgccgaaggaggc 278 ||||||||||||||||| ||||||| Sbjct: 38 tggagcccgcggcgccgcaggaggc 14
>gb|AC020904.7| Homo sapiens chromosome 19 clone CTB-52I2, complete sequence Length = 148824 Score = 42.1 bits (21), Expect = 1.5 Identities = 24/25 (96%) Strand = Plus / Minus Query: 254 tggagcccgcggcgccgaaggaggc 278 ||||||||||||||||| ||||||| Sbjct: 143699 tggagcccgcggcgccgcaggaggc 143675
>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete sequence Length = 30731886 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Minus Query: 262 gcggcgccgaaggaggcgccg 282 ||||||||||||||||||||| Sbjct: 1376764 gcggcgccgaaggaggcgccg 1376744
>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete sequence Length = 29737217 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Minus Query: 112 cgcgtccaaaccctagctagc 132 ||||||||||||||||||||| Sbjct: 17489029 cgcgtccaaaccctagctagc 17489009
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete sequence Length = 36192742 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Plus Query: 24 ctccctcttctctctctatcc 44 ||||||||||||||||||||| Sbjct: 28108823 ctccctcttctctctctatcc 28108843 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 24 ctccctcttctctctctatc 43 |||||||||||||||||||| Sbjct: 27128185 ctccctcttctctctctatc 27128166
>ref|NM_021266.2| Rattus norvegicus frizzled homolog 1 (Drosophila) (Fzd1), mRNA Length = 4187 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Plus Query: 278 cgccgccgccccagccacagc 298 ||||||||||||||||||||| Sbjct: 666 cgccgccgccccagccacagc 686
>gb|AF314058.1|AF314058 Homo sapiens chromosome 20 clone GS1-430E01 map 20q12-q13.12, complete sequence Length = 189656 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Minus Query: 422 aggagggtgaccccaggtcct 442 ||||||||||||||||||||| Sbjct: 131168 aggagggtgaccccaggtcct 131148
>dbj|AP001168.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, clone:P0425F02 Length = 176979 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Minus Query: 262 gcggcgccgaaggaggcgccg 282 ||||||||||||||||||||| Sbjct: 85303 gcggcgccgaaggaggcgccg 85283
>dbj|AK108334.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-142-A04, full insert sequence Length = 933 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Plus Query: 112 cgcgtccaaaccctagctagc 132 ||||||||||||||||||||| Sbjct: 39 cgcgtccaaaccctagctagc 59
>dbj|D79206.1|HUMRCP Homo sapiens gene for ryudocan core protein, exon1-5, complete cds Length = 23822 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Minus Query: 422 aggagggtgaccccaggtcct 442 ||||||||||||||||||||| Sbjct: 5280 aggagggtgaccccaggtcct 5260
>gb|AC005793.1|AC005793 Homo sapiens chromosome 19, cosmid F23522, complete sequence Length = 38968 Score = 42.1 bits (21), Expect = 1.5 Identities = 24/25 (96%) Strand = Plus / Minus Query: 254 tggagcccgcggcgccgaaggaggc 278 ||||||||||||||||| ||||||| Sbjct: 1051 tggagcccgcggcgccgcaggaggc 1027
>gb|L02529.1|RATFRZZH Rattus norvegicus Drosophila polarity gene (frizzled) homologue mRNA, complete cds Length = 4540 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Plus Query: 278 cgccgccgccccagccacagc 298 ||||||||||||||||||||| Sbjct: 1019 cgccgccgccccagccacagc 1039
>dbj|AB011133.1| Homo sapiens mRNA for KIAA0561 protein, partial cds Length = 5887 Score = 42.1 bits (21), Expect = 1.5 Identities = 24/25 (96%) Strand = Plus / Minus Query: 254 tggagcccgcggcgccgaaggaggc 278 ||||||||||||||||| ||||||| Sbjct: 36 tggagcccgcggcgccgcaggaggc 12
>gb|AC153856.23| Mus musculus 10 BAC RP23-468J15 (Roswell Park Cancer Institute (C57BL/6J Female) Mouse BAC Library) complete sequence Length = 188027 Score = 40.1 bits (20), Expect = 6.1 Identities = 23/24 (95%) Strand = Plus / Plus Query: 296 agcccggggcggaggaggacggga 319 ||||| |||||||||||||||||| Sbjct: 75147 agcccagggcggaggaggacggga 75170
>gb|CP000010.1| Burkholderia mallei ATCC 23344 chromosome 1, complete sequence Length = 3510148 Score = 40.1 bits (20), Expect = 6.1 Identities = 23/24 (95%) Strand = Plus / Plus Query: 397 gtgctcgcgcagctcctgctcaag 420 ||||||||||||||| |||||||| Sbjct: 224899 gtgctcgcgcagctcgtgctcaag 224922
>gb|BC052680.1| Mus musculus transformed mouse 3T3 cell double minute 1, mRNA (cDNA clone IMAGE:30063481), partial cds Length = 3090 Score = 40.1 bits (20), Expect = 6.1 Identities = 23/24 (95%) Strand = Plus / Plus Query: 296 agcccggggcggaggaggacggga 319 ||||| |||||||||||||||||| Sbjct: 1481 agcccagggcggaggaggacggga 1504
>gb|CP000124.1| Burkholderia pseudomallei 1710b chromosome I, complete sequence Length = 4126292 Score = 40.1 bits (20), Expect = 6.1 Identities = 23/24 (95%) Strand = Plus / Plus Query: 397 gtgctcgcgcagctcctgctcaag 420 ||||||||||||||| |||||||| Sbjct: 907176 gtgctcgcgcagctcgtgctcaag 907199
>ref|NM_148922.2| Mus musculus transformed mouse 3T3 cell double minute 1 (Mdm1), transcript variant 2, mRNA Length = 3074 Score = 40.1 bits (20), Expect = 6.1 Identities = 23/24 (95%) Strand = Plus / Plus Query: 296 agcccggggcggaggaggacggga 319 ||||| |||||||||||||||||| Sbjct: 1486 agcccagggcggaggaggacggga 1509
>gb|AC119166.16| Mus musculus chromosome 1, clone RP24-393L8, complete sequence Length = 163121 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 24 ctccctcttctctctctatc 43 |||||||||||||||||||| Sbjct: 83798 ctccctcttctctctctatc 83817
>ref|XM_851492.1| PREDICTED: Canis familiaris hypothetical protein LOC607008 (LOC607008), mRNA Length = 1441 Score = 40.1 bits (20), Expect = 6.1 Identities = 23/24 (95%) Strand = Plus / Minus Query: 265 gcgccgaaggaggcgccgccgccc 288 ||||||| |||||||||||||||| Sbjct: 506 gcgccgagggaggcgccgccgccc 483
>emb|AL670729.19| Human DNA sequence from clone RP11-245P10 on chromosome 1 Contains the 3' end of the OBSCN gene for obscurin cytoskeletal calmodulin and titin-interacting RhoGEF protein, a novel protein, the TRIM11 gene for tripartite motif-containing 11 protein, the 5' end of a novel transcript, the 3' end of the TRIM17 gene for tripartite motif-containing 17 protein and three CpG islands, complete sequence Length = 62164 Score = 40.1 bits (20), Expect = 6.1 Identities = 23/24 (95%) Strand = Plus / Plus Query: 132 ccctccccaactccaaaccctacc 155 ||||||||||||||| |||||||| Sbjct: 26937 ccctccccaactccataccctacc 26960
>gb|CP000320.1| Nitrobacter hamburgensis X14 plasmid 1, complete sequence Length = 294829 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 398 tgctcgcgcagctcctgctc 417 |||||||||||||||||||| Sbjct: 204676 tgctcgcgcagctcctgctc 204657
>emb|X54529.1|BMVVP Belladonna mottle virus VP gene for virion protein and ORF Length = 615 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 241 aagatctggcggatggagcc 260 |||||||||||||||||||| Sbjct: 155 aagatctggcggatggagcc 136
>emb|CR555306.1| Azoarcus sp. EbN1 complete genome Length = 4296230 Score = 40.1 bits (20), Expect = 6.1 Identities = 26/28 (92%) Strand = Plus / Plus Query: 390 cgccgaggtgctcgcgcagctcctgctc 417 ||||||||| ||||||||||||||||| Sbjct: 1521410 cgccgaggtagtcgcgcagctcctgctc 1521437
>emb|BX842651.1| Bdellovibrio bacteriovorus complete genome, strain HD100; segment 6/11 Length = 346161 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 404 cgcagctcctgctcaagaag 423 |||||||||||||||||||| Sbjct: 152751 cgcagctcctgctcaagaag 152732
>emb|BX571965.1| Burkholderia pseudomallei strain K96243, chromosome 1, complete sequence Length = 4074542 Score = 40.1 bits (20), Expect = 6.1 Identities = 23/24 (95%) Strand = Plus / Plus Query: 397 gtgctcgcgcagctcctgctcaag 420 ||||||||||||||| |||||||| Sbjct: 749559 gtgctcgcgcagctcgtgctcaag 749582
>gb|AF529084.1| Borrelia sp. LB-M56 flagellin gene, partial cds Length = 780 Score = 40.1 bits (20), Expect = 6.1 Identities = 29/32 (90%) Strand = Plus / Plus Query: 395 aggtgctcgcgcagctcctgctcaagaaggag 426 |||||||| |||||||| ||||||||||||| Sbjct: 488 aggtgctcaagcagctccagctcaagaaggag 519
>emb|AL662953.3|OSJN00153 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0011F23, complete sequence Length = 149353 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 277 gcgccgccgccccagccaca 296 |||||||||||||||||||| Sbjct: 141384 gcgccgccgccccagccaca 141365
>emb|AL606608.3|OSJN00056 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0015K02, complete sequence Length = 153623 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 277 gcgccgccgccccagccaca 296 |||||||||||||||||||| Sbjct: 60767 gcgccgccgccccagccaca 60748
>gb|AY083503.1| Borrelia burgdorferi isolate Na34 flagellin (fla) gene, partial cds Length = 615 Score = 40.1 bits (20), Expect = 6.1 Identities = 29/32 (90%) Strand = Plus / Plus Query: 395 aggtgctcgcgcagctcctgctcaagaaggag 426 |||||||| |||||||| ||||||||||||| Sbjct: 244 aggtgctcaagcagctccagctcaagaaggag 275
>gb|AY083502.1| Borrelia burgdorferi isolate St4 flagellin (fla) gene, partial cds Length = 615 Score = 40.1 bits (20), Expect = 6.1 Identities = 29/32 (90%) Strand = Plus / Plus Query: 395 aggtgctcgcgcagctcctgctcaagaaggag 426 |||||||| |||||||| ||||||||||||| Sbjct: 244 aggtgctcaagcagctccagctcaagaaggag 275
>gb|CP000076.1| Pseudomonas fluorescens Pf-5, complete genome Length = 7074893 Score = 40.1 bits (20), Expect = 6.1 Identities = 23/24 (95%) Strand = Plus / Minus Query: 352 gccgccgtgctgttccagagccgc 375 |||||||||||||||||| ||||| Sbjct: 4924283 gccgccgtgctgttccagcgccgc 4924260
>gb|AC152492.4| Rhinolophus ferrumequinum clone VMRC7-117I4, complete sequence Length = 135666 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 21 caactccctcttctctctct 40 |||||||||||||||||||| Sbjct: 76260 caactccctcttctctctct 76241
>gb|AF480497.1| Oryza sativa clone BAC 24K23, complete sequence Length = 181577 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 277 gcgccgccgccccagccaca 296 |||||||||||||||||||| Sbjct: 141502 gcgccgccgccccagccaca 141483
>dbj|AK004789.2| Mus musculus adult male lung cDNA, RIKEN full-length enriched library, clone:1200015H18 product:transformed mouse 3T3 cell double minute 1, full insert sequence Length = 3074 Score = 40.1 bits (20), Expect = 6.1 Identities = 23/24 (95%) Strand = Plus / Plus Query: 296 agcccggggcggaggaggacggga 319 ||||| |||||||||||||||||| Sbjct: 1486 agcccagggcggaggaggacggga 1509
>dbj|AK011769.1| Mus musculus 10 days embryo whole body cDNA, RIKEN full-length enriched library, clone:2610044J23 product:transformed mouse 3T3 cell double minute 1, full insert sequence Length = 2936 Score = 40.1 bits (20), Expect = 6.1 Identities = 23/24 (95%) Strand = Plus / Plus Query: 296 agcccggggcggaggaggacggga 319 ||||| |||||||||||||||||| Sbjct: 1486 agcccagggcggaggaggacggga 1509
>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete sequence Length = 35498469 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 277 gcgccgccgccccagccaca 296 |||||||||||||||||||| Sbjct: 33710324 gcgccgccgccccagccaca 33710305
>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, complete sequence Length = 28434780 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 151 ctaccgccagtgctccagtt 170 |||||||||||||||||||| Sbjct: 17772492 ctaccgccagtgctccagtt 17772473
>gb|AC114547.12| Mus musculus chromosome 8, clone RP24-68M15, complete sequence Length = 182611 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 21 caactccctcttctctctct 40 |||||||||||||||||||| Sbjct: 149896 caactccctcttctctctct 149915
>gb|DQ016626.1| Borrelia sp. 6T04-2 flagellin gene, partial cds Length = 598 Score = 40.1 bits (20), Expect = 6.1 Identities = 29/32 (90%) Strand = Plus / Plus Query: 395 aggtgctcgcgcagctcctgctcaagaaggag 426 |||||||| |||||||| ||||||||||||| Sbjct: 383 aggtgctcaagcagctccagctcaagaaggag 414
>gb|AC087851.4|AC087851 Oryza sativa chromosome 3 BAC OSJNBb0072E24 genomic sequence, complete sequence Length = 111882 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 24 ctccctcttctctctctatc 43 |||||||||||||||||||| Sbjct: 22537 ctccctcttctctctctatc 22556
>gb|DP000028.1| Rhinolophus ferrumequinum target 1 genomic scaffold Length = 1756392 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 21 caactccctcttctctctct 40 |||||||||||||||||||| Sbjct: 1269641 caactccctcttctctctct 1269622
>dbj|BA000030.2| Streptomyces avermitilis MA-4680 genomic DNA, complete genome Length = 9025608 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 269 cgaaggaggcgccgccgccc 288 |||||||||||||||||||| Sbjct: 7123003 cgaaggaggcgccgccgccc 7123022
>gb|DQ341314.1| Ascochyta lentis strain ATCC 96420 MAT1-1-1 (MAT1-1-1) gene, complete cds Length = 3214 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 146 aaaccctaccgccagtgctc 165 |||||||||||||||||||| Sbjct: 2729 aaaccctaccgccagtgctc 2710
>gb|AC158804.3| Mus musculus 10 BAC RP24-354M22 (Roswell Park Cancer Institute (C57BL/6J Male) Mouse BAC Library) complete sequence Length = 151309 Score = 40.1 bits (20), Expect = 6.1 Identities = 23/24 (95%) Strand = Plus / Plus Query: 296 agcccggggcggaggaggacggga 319 ||||| |||||||||||||||||| Sbjct: 133227 agcccagggcggaggaggacggga 133250
>dbj|AP005443.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, BAC clone:OSJNBb0011E04 Length = 136767 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 151 ctaccgccagtgctccagtt 170 |||||||||||||||||||| Sbjct: 46886 ctaccgccagtgctccagtt 46867
>dbj|AK111359.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-181-H04, full insert sequence Length = 598 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 277 gcgccgccgccccagccaca 296 |||||||||||||||||||| Sbjct: 203 gcgccgccgccccagccaca 184
>gb|AF035634.1| Dulcamara mottle tymovirus virion protein gene, complete cds Length = 682 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 241 aagatctggcggatggagcc 260 |||||||||||||||||||| Sbjct: 161 aagatctggcggatggagcc 142
>emb|AL928560.6| Mouse DNA sequence from clone RP23-353N23 on chromosome 2, complete sequence Length = 209502 Score = 40.1 bits (20), Expect = 6.1 Identities = 23/24 (95%) Strand = Plus / Minus Query: 131 gccctccccaactccaaaccctac 154 |||||||||| ||||||||||||| Sbjct: 34257 gccctccccacctccaaaccctac 34234
>gb|M20823.1|MUSMDM1A Mouse nuclear protein (mdm-1) mRNA, complete cds Length = 2934 Score = 40.1 bits (20), Expect = 6.1 Identities = 23/24 (95%) Strand = Plus / Plus Query: 296 agcccggggcggaggaggacggga 319 ||||| |||||||||||||||||| Sbjct: 1394 agcccagggcggaggaggacggga 1417 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 3,107,074 Number of Sequences: 3902068 Number of extensions: 3107074 Number of successful extensions: 73317 Number of sequences better than 10.0: 81 Number of HSP's better than 10.0 without gapping: 81 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 72192 Number of HSP's gapped (non-prelim): 1125 length of query: 451 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 429 effective length of database: 17,147,199,772 effective search space: 7356148702188 effective search space used: 7356148702188 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
