ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bastl32d07 |
|---|---|
| Clone Library Name | barley_pub |
>dbj|AP003923.1| Mus musculus genomic DNA, chromosome 2, clone:B478c13, complete sequence Length = 171634 Score = 42.1 bits (21), Expect = 0.37 Identities = 21/21 (100%) Strand = Plus / Plus Query: 4 atatctccaaactccaatctc 24 ||||||||||||||||||||| Sbjct: 64618 atatctccaaactccaatctc 64638
>emb|AL929021.13| Mouse DNA sequence from clone RP23-89H14 on chromosome 2, complete sequence Length = 181549 Score = 42.1 bits (21), Expect = 0.37 Identities = 21/21 (100%) Strand = Plus / Minus Query: 4 atatctccaaactccaatctc 24 ||||||||||||||||||||| Sbjct: 94467 atatctccaaactccaatctc 94447
>dbj|AP005858.1| Mus musculus genomic DNA, chromosome 2 clone:B478C13, complete sequence Length = 174714 Score = 42.1 bits (21), Expect = 0.37 Identities = 21/21 (100%) Strand = Plus / Plus Query: 4 atatctccaaactccaatctc 24 ||||||||||||||||||||| Sbjct: 64618 atatctccaaactccaatctc 64638
>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, complete sequence Length = 28434780 Score = 40.1 bits (20), Expect = 1.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 8 ctccaaactccaatctccaa 27 |||||||||||||||||||| Sbjct: 85572 ctccaaactccaatctccaa 85591
>dbj|AP004654.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, PAC clone:P0015C07 Length = 149079 Score = 40.1 bits (20), Expect = 1.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 8 ctccaaactccaatctccaa 27 |||||||||||||||||||| Sbjct: 907 ctccaaactccaatctccaa 926
>dbj|AP005406.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, BAC clone:B1147B12 Length = 127902 Score = 40.1 bits (20), Expect = 1.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 8 ctccaaactccaatctccaa 27 |||||||||||||||||||| Sbjct: 85572 ctccaaactccaatctccaa 85591
>gb|AC069020.8| Homo sapiens chromosome 10 clone RP11-165K20, complete sequence Length = 171413 Score = 38.2 bits (19), Expect = 5.8 Identities = 22/23 (95%) Strand = Plus / Plus Query: 2 acatatctccaaactccaatctc 24 ||||||||| ||||||||||||| Sbjct: 120904 acatatctctaaactccaatctc 120926
>gb|AC009383.8| Drosophila melanogaster 3L BAC RP98-31C3 (Roswell Park Cancer Institute Drosophila BAC Library) complete sequence Length = 179283 Score = 38.2 bits (19), Expect = 5.8 Identities = 19/19 (100%) Strand = Plus / Minus Query: 87 tgcctccggccaaagccag 105 ||||||||||||||||||| Sbjct: 77129 tgcctccggccaaagccag 77111
>ref|XM_692093.1| PREDICTED: Danio rerio similar to regulatory factor X-associated protein (LOC568745), mRNA Length = 1437 Score = 38.2 bits (19), Expect = 5.8 Identities = 19/19 (100%) Strand = Plus / Plus Query: 94 ggccaaagccaggaaaccc 112 ||||||||||||||||||| Sbjct: 485 ggccaaagccaggaaaccc 503
>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete sequence Length = 30731886 Score = 38.2 bits (19), Expect = 5.8 Identities = 19/19 (100%) Strand = Plus / Minus Query: 1 aacatatctccaaactcca 19 ||||||||||||||||||| Sbjct: 6349629 aacatatctccaaactcca 6349611
>dbj|AP005545.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC clone:P0638H11 Length = 162746 Score = 38.2 bits (19), Expect = 5.8 Identities = 19/19 (100%) Strand = Plus / Minus Query: 1 aacatatctccaaactcca 19 ||||||||||||||||||| Sbjct: 16573 aacatatctccaaactcca 16555
>dbj|AP004727.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC clone:P0516A04 Length = 145107 Score = 38.2 bits (19), Expect = 5.8 Identities = 19/19 (100%) Strand = Plus / Minus Query: 1 aacatatctccaaactcca 19 ||||||||||||||||||| Sbjct: 143705 aacatatctccaaactcca 143687
>gb|AE003514.4| Drosophila melanogaster chromosome 3L, section 71 of 83 of the complete sequence Length = 299903 Score = 38.2 bits (19), Expect = 5.8 Identities = 19/19 (100%) Strand = Plus / Minus Query: 87 tgcctccggccaaagccag 105 ||||||||||||||||||| Sbjct: 120146 tgcctccggccaaagccag 120128 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 800,253 Number of Sequences: 3902068 Number of extensions: 800253 Number of successful extensions: 53744 Number of sequences better than 10.0: 13 Number of HSP's better than 10.0 without gapping: 13 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 53665 Number of HSP's gapped (non-prelim): 79 length of query: 125 length of database: 17,233,045,268 effective HSP length: 21 effective length of query: 104 effective length of database: 17,151,101,840 effective search space: 1783714591360 effective search space used: 1783714591360 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 19 (38.2 bits)
