ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bastl32c03 |
|---|---|
| Clone Library Name | barley_pub |
>CCD95_RAT (Q6AYH2) Coiled-coil domain-containing protein 95| Length = 244 Score = 32.7 bits (73), Expect = 0.41 Identities = 23/52 (44%), Positives = 27/52 (51%), Gaps = 2/52 (3%) Frame = +2 Query: 17 SEASETE--KRRLALPAPKERASETQK*GAPSPDKPSLPLASSARLQPHGRP 166 S+ SETE + PAPK + S GAPSP SLP +S LQ G P Sbjct: 76 SDNSETEGTPKLSDTPAPKRKRSPPMG-GAPSPSSLSLPPSSGFPLQTSGAP 126
>PP1RA_PIG (Q767K9) Serine/threonine-protein phosphatase 1 regulatory subunit| 10 (MHC class I region proline-rich protein CAT53) (Protein FB19) Length = 925 Score = 32.3 bits (72), Expect = 0.54 Identities = 19/63 (30%), Positives = 27/63 (42%) Frame = +2 Query: 5 KGKGSEASETEKRRLALPAPKERASETQK*GAPSPDKPSLPLASSARLQPHGRPRRSIGT 184 +GK S T K PAP A +T + G P P L +A L+P + + + Sbjct: 323 EGKTSTEPSTAKPSSPEPAPPSEAMDTDRPGTPVPPVEVPELMDTASLEPGALDAKPVES 382 Query: 185 AGD 193 GD Sbjct: 383 PGD 385
>PP1RA_PANTR (Q7YR38) Serine/threonine-protein phosphatase 1 regulatory subunit| 10 (MHC class I region proline-rich protein CAT53) (Protein FB19) Length = 940 Score = 31.6 bits (70), Expect = 0.91 Identities = 19/63 (30%), Positives = 26/63 (41%) Frame = +2 Query: 5 KGKGSEASETEKRRLALPAPKERASETQK*GAPSPDKPSLPLASSARLQPHGRPRRSIGT 184 +GK S T K PAP A E + G P P L +A L+P + + + Sbjct: 323 EGKTSTEPSTAKPSSPEPAPPSEAMEADRPGTPVPPVEVPELMDTASLEPGALDAKPVES 382 Query: 185 AGD 193 GD Sbjct: 383 PGD 385
>NOLA1_CAEEL (Q9TYK1) Putative H/ACA ribonucleoprotein complex subunit 1-like| protein Length = 244 Score = 30.8 bits (68), Expect = 1.6 Identities = 19/45 (42%), Positives = 20/45 (44%), Gaps = 3/45 (6%) Frame = -1 Query: 175 GTAGAAVGLETGGRSK---GERGFVRRGGASFLGLARSLFGGWEG 50 G G G + GGR G GF R GG F G R FGG G Sbjct: 154 GRGGRGRGGDRGGRGSDRGGRGGFGRGGGGGFRGGDRGGFGGGRG 198
>PP1RA_HUMAN (Q96QC0) Serine/threonine-protein phosphatase 1 regulatory subunit| 10 (Phosphatase 1 nuclear targeting subunit) (MHC class I region proline-rich protein CAT53) (FB19 protein) (PP1-binding protein of 114 kDa) (p99) Length = 940 Score = 30.4 bits (67), Expect = 2.0 Identities = 18/63 (28%), Positives = 26/63 (41%) Frame = +2 Query: 5 KGKGSEASETEKRRLALPAPKERASETQK*GAPSPDKPSLPLASSARLQPHGRPRRSIGT 184 +GK S T K PAP A + + G P P L +A L+P + + + Sbjct: 323 EGKTSTEPSTAKPSSPEPAPPSEAMDADRPGTPVPPVEVPELMDTASLEPGALDAKPVES 382 Query: 185 AGD 193 GD Sbjct: 383 PGD 385
>IF2_CORGL (Q8NP40) Translation initiation factor IF-2| Length = 1004 Score = 30.4 bits (67), Expect = 2.0 Identities = 24/68 (35%), Positives = 30/68 (44%), Gaps = 2/68 (2%) Frame = +2 Query: 14 GSEASETEKRRLALP--APKERASETQK*GAPSPDKPSLPLASSARLQPHGRPRRSIGTA 187 GS+ S+T + A APK AS K GAP+ KP+ P A A P G A Sbjct: 55 GSDKSDTAAKPAAAKPAAPKPAASAAPKPGAPA--KPAAPAAKPAPAAPSAASAAKPGAA 112 Query: 188 GDGFVQVR 211 VQ + Sbjct: 113 PKPGVQAK 120
>HCN2_MOUSE (O88703) Potassium/sodium hyperpolarization-activated cyclic| nucleotide-gated channel 2 (Brain cyclic nucleotide gated channel 2) (BCNG-2) (Hyperpolarization-activated cation channel 1) (HAC-1) Length = 863 Score = 30.0 bits (66), Expect = 2.7 Identities = 23/82 (28%), Positives = 27/82 (32%), Gaps = 18/82 (21%) Frame = -1 Query: 277 EQAPRARKAAAPICCRPG----------GRGDANLDKSIPC--------CTNGTAGAAVG 152 E PRAR + C PG GRG+ P C +G + Sbjct: 55 EPGPRARLCSRDSACTPGAAKGGANGECGRGEPQCSPEGPARGPKVSFSCRGAASGPSAA 114 Query: 151 LETGGRSKGERGFVRRGGASFL 86 E G G G R ASFL Sbjct: 115 EEAGSEEAGPAGEPRGSQASFL 136
>CCD95_HUMAN (Q8NBZ0) Coiled-coil domain-containing protein 95| Length = 244 Score = 30.0 bits (66), Expect = 2.7 Identities = 22/52 (42%), Positives = 27/52 (51%), Gaps = 2/52 (3%) Frame = +2 Query: 17 SEASETE--KRRLALPAPKERASETQK*GAPSPDKPSLPLASSARLQPHGRP 166 S+ SETE + PAPK + S GAPSP SLP ++ LQ G P Sbjct: 76 SDNSETEGTPKLSDTPAPKRKRSPPLG-GAPSPSSLSLPPSTGFPLQASGVP 126
>PP1RA_MACMU (Q5TM61) Serine/threonine-protein phosphatase 1 regulatory subunit| 10 (MHC class I region proline-rich protein CAT53) Length = 940 Score = 30.0 bits (66), Expect = 2.7 Identities = 18/63 (28%), Positives = 26/63 (41%) Frame = +2 Query: 5 KGKGSEASETEKRRLALPAPKERASETQK*GAPSPDKPSLPLASSARLQPHGRPRRSIGT 184 +GK S T K PAP A + + G P P L +A L+P + + + Sbjct: 323 EGKTSTEPSTAKPSSPEPAPPSEAMDIDRPGTPVPPVEVPELMDTASLEPGALDAKPVES 382 Query: 185 AGD 193 GD Sbjct: 383 PGD 385
>3BP1_MOUSE (P55194) SH3 domain-binding protein 1 (3BP-1)| Length = 601 Score = 29.6 bits (65), Expect = 3.5 Identities = 22/66 (33%), Positives = 29/66 (43%), Gaps = 4/66 (6%) Frame = +2 Query: 2 TKGKGSEASETEKRRLALPA----PKERASETQK*GAPSPDKPSLPLASSARLQPHGRPR 169 T+ S T K + PA P + S T+ SP PSLP S + P PR Sbjct: 464 TETAASAEDMTRKTKRPAPARPTMPPPQPSSTRS----SPPAPSLPPGSVSPGTPQALPR 519 Query: 170 RSIGTA 187 R +GT+ Sbjct: 520 RLVGTS 525
>SPD2_NEPCL (P46804) Spidroin 2 (Dragline silk fibroin 2) (Fragment)| Length = 627 Score = 29.3 bits (64), Expect = 4.5 Identities = 25/83 (30%), Positives = 32/83 (38%) Frame = -1 Query: 289 GRRSEQAPRARKAAAPICCRPGGRGDANLDKSIPCCTNGTAGAAVGLETGGRSKGERGFV 110 G++ P + AAA PGG G A S P G A +A GG ++G Sbjct: 446 GQQGPSGPGSAAAAAAAAAGPGGYGPAQQGPSGP----GIAASAASAGPGGYGPAQQGPA 501 Query: 109 RRGGASFLGLARSLFGGWEGQPP 41 G S +A S G G P Sbjct: 502 GYGPGS--AVAASAGAGSAGYGP 522
>TOR3A_HUMAN (Q9H497) Torsin-3A precursor (Torsin family 3 member A)| (ATP-dependent interferon-responsive protein) Length = 397 Score = 29.3 bits (64), Expect = 4.5 Identities = 13/33 (39%), Positives = 16/33 (48%), Gaps = 3/33 (9%) Frame = +2 Query: 332 PAAPQPRST---WTASGTCCRRPGRSWTWPGSQ 421 P AP+PR W + PG +W WPG Q Sbjct: 18 PGAPEPRGASRPWEGTD----EPGSAWAWPGFQ 46
>PRP4B_HUMAN (Q13523) Serine/threonine-protein kinase PRP4 homolog (EC 2.7.11.1)| (PRP4 pre-mRNA-processing factor 4 homolog) (PRP4 kinase) Length = 1007 Score = 29.3 bits (64), Expect = 4.5 Identities = 17/58 (29%), Positives = 30/58 (51%) Frame = +2 Query: 2 TKGKGSEASETEKRRLALPAPKERASETQK*GAPSPDKPSLPLASSARLQPHGRPRRS 175 +K + S+ SET+K + + +P + AS ++ +PS P S +P + RRS Sbjct: 309 SKERKSKRSETDKEKKPIKSPSKDASSGKENRSPSRRPGRSPKRRSLSPKPRDKSRRS 366
>TRIO_HUMAN (O75962) Triple functional domain protein (PTPRF-interacting protein)| Length = 3038 Score = 28.9 bits (63), Expect = 5.9 Identities = 21/59 (35%), Positives = 28/59 (47%), Gaps = 5/59 (8%) Frame = +2 Query: 8 GKGSEASETEKRRLALPAPKERASETQK*GAP-----SPDKPSLPLASSARLQPHGRPR 169 G +E SE E A P PK + E+ + GA SPD P+ +S P G+PR Sbjct: 2337 GADAEGSERE----AEPIPKMKVLESPRKGAANASGSSPDAPAKDARASLGTLPLGKPR 2391
>KCNC3_RAT (Q01956) Potassium voltage-gated channel subfamily C member 3| (Voltage-gated potassium channel subunit Kv3.3) (KSHIIID) Length = 889 Score = 28.9 bits (63), Expect = 5.9 Identities = 18/55 (32%), Positives = 25/55 (45%) Frame = -1 Query: 262 ARKAAAPICCRPGGRGDANLDKSIPCCTNGTAGAAVGLETGGRSKGERGFVRRGG 98 A A AP+ C PGGR ++ PC +G A+G GG + + GG Sbjct: 52 ASPAGAPLSCGPGGR------RAEPC--SGLPAVAMGRHGGGGGDSGKIVINVGG 98
>IF2_MYCLE (Q9Z5I9) Translation initiation factor IF-2| Length = 924 Score = 28.9 bits (63), Expect = 5.9 Identities = 23/76 (30%), Positives = 29/76 (38%) Frame = -1 Query: 271 APRARKAAAPICCRPGGRGDANLDKSIPCCTNGTAGAAVGLETGGRSKGERGFVRRGGAS 92 APR + + + RPGG + G G GGRS G R GG Sbjct: 197 APRPSASPSSMSPRPGGAVGGGGPRPPRTGVPRPGGGRPGAPVGGRSDAGGGNYRGGGVG 256 Query: 91 FLGLARSLFGGWEGQP 44 L S GG+ G+P Sbjct: 257 ALPGGGS--GGFRGRP 270
>MLH1_MOUSE (Q9JK91) DNA mismatch repair protein Mlh1 (MutL protein homolog 1)| Length = 760 Score = 28.5 bits (62), Expect = 7.7 Identities = 12/29 (41%), Positives = 19/29 (65%) Frame = +2 Query: 2 TKGKGSEASETEKRRLALPAPKERASETQ 88 T+G A+ ++ LALPAP E A+E++ Sbjct: 419 TEGSPERATREDEEMLALPAPAEAAAESE 447
>PP1RA_MOUSE (Q80W00) Serine/threonine-protein phosphatase 1 regulatory subunit| 10 (MHC class I region proline-rich protein CAT53) Length = 888 Score = 28.5 bits (62), Expect = 7.7 Identities = 17/63 (26%), Positives = 25/63 (39%) Frame = +2 Query: 5 KGKGSEASETEKRRLALPAPKERASETQK*GAPSPDKPSLPLASSARLQPHGRPRRSIGT 184 +GK S T K PAP +T + G P P L +A +P + + + Sbjct: 323 EGKTSTEQSTAKPSSPEPAPPAEPMDTDRPGTPVPPVEVPELMDAASSEPGALDAKPVDS 382 Query: 185 AGD 193 GD Sbjct: 383 PGD 385
>ADP1_MYCPN (P11311) Adhesin P1 precursor (Cytadhesin P1) (Attachment protein)| Length = 1627 Score = 28.5 bits (62), Expect = 7.7 Identities = 20/56 (35%), Positives = 24/56 (42%), Gaps = 1/56 (1%) Frame = +2 Query: 2 TKGKGSEASETEKRRLALPAPKE-RASETQK*GAPSPDKPSLPLASSARLQPHGRP 166 TK GS E R APK + + K GAP P P P A +QP +P Sbjct: 1571 TKAVGSVFKEIINRTGISQAPKRLKQTSAAKPGAPRPPVPPKPGAPKPPVQPPKKP 1626
>RING1_CANFA (Q5TJF3) Ubiquitin ligase protein RING1 (EC 6.3.2.-) (RING finger| protein 1) (RING1a) Length = 406 Score = 28.5 bits (62), Expect = 7.7 Identities = 19/61 (31%), Positives = 25/61 (40%) Frame = -1 Query: 280 SEQAPRARKAAAPICCRPGGRGDANLDKSIPCCTNGTAGAAVGLETGGRSKGERGFVRRG 101 S+ AP + AP R GG G +++ T G VG G G+RG G Sbjct: 188 SDSAPDSAPGPAPKRPRGGGAGGSSVG------TGGGGAGGVGGGAGSEDSGDRGGTLGG 241 Query: 100 G 98 G Sbjct: 242 G 242
>IF2_AGRT5 (Q8UJ51) Translation initiation factor IF-2| Length = 913 Score = 28.5 bits (62), Expect = 7.7 Identities = 23/67 (34%), Positives = 31/67 (46%), Gaps = 1/67 (1%) Frame = -1 Query: 292 RGRRSEQAPRARKAAAPIC-CRPGGRGDANLDKSIPCCTNGTAGAAVGLETGGRSKGERG 116 R + + P A A AP RP + A +S P + A A G TGG + +RG Sbjct: 197 RAEPASERPAAAAAPAPRTDARP--QSAAAAPRSAPATPD--AAAPRGRRTGGDDEDDRG 252 Query: 115 FVRRGGA 95 VRRG + Sbjct: 253 AVRRGSS 259
>C1QT4_MOUSE (Q8R066) Complement C1q tumor necrosis factor-related protein 4| precursor Length = 326 Score = 28.5 bits (62), Expect = 7.7 Identities = 16/33 (48%), Positives = 21/33 (63%) Frame = +2 Query: 326 RGPAAPQPRSTWTASGTCCRRPGRSWTWPGSQH 424 RGPAAP+PRS ++A+ T R S PG +H Sbjct: 166 RGPAAPEPRSAFSAART--RSLVGSDAAPGPRH 196 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 44,641,867 Number of Sequences: 219361 Number of extensions: 691322 Number of successful extensions: 3222 Number of sequences better than 10.0: 22 Number of HSP's better than 10.0 without gapping: 2984 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 3207 length of database: 80,573,946 effective HSP length: 101 effective length of database: 58,418,485 effective search space used: 2628831825 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
