ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bastl32c02 |
|---|---|
| Clone Library Name | barley_pub |
>ref|XM_465561.1| Oryza sativa (japonica cultivar-group), mRNA Length = 3440 Score = 204 bits (103), Expect = 2e-49 Identities = 328/402 (81%), Gaps = 12/402 (2%) Strand = Plus / Plus Query: 63 gccgctgtccggcgccgcggcgccccggccggcgagatgaggagccccttccggctaccc 122 ||||| ||||| ||||||||| | |||||||||| |||||| ||||| | ||| | | Sbjct: 106 gccgccgtccgccgccgcggcactccggccggcgggatgag---cccctccgggcggctc 162 Query: 123 gccgcccccttcgtatccgcgctcgtcctcctcatgctcgctctggttccgtccccggag 182 ||||||||||||| | | | |||||||| || ||||||||||||| ||||| |||||| Sbjct: 163 cccgcccccttcgtcttccccctcgtcctgctgctgctcgctctggtgccgtcaccggag 222 Query: 183 gcggccgagaccaccacaccggggacccggacgcgcaagctcggccccggcggctcttcc 242 ||||||||| |||| |||||||| |||||||||||| ||||| || || || Sbjct: 223 gcggccgagtccacg---ccggggacgcggacgcgcaagatcggcggcgccg------cc 273 Query: 243 tcggtgttctcgctcttcaacctcaagccccagagcaagttctggacggaatcggtcatg 302 |||||||||||||||||||||||||||||||||| |||||||||| |||| || ||||| Sbjct: 274 tcggtgttctcgctcttcaacctcaagccccagaacaagttctggtcggagtccgtcatc 333 Query: 303 cggacagagttcgatgacctggtgggctcgaagtcaagggactccatcaacgtggggctt 362 || || || ||||||||| ||| |||||| | || ||||||||| ||| || ||| Sbjct: 334 cgcacggaattcgatgacttggagggctcaacatcgcgggactccagcaagaaggcgctg 393 Query: 363 ctgaacttcacaagagctggtaatgttgcaaactatatgaacctggcggaagttgattcg 422 || |||||||| |||||||||||| |||| |||||||||| ||| || || |||||||| Sbjct: 394 ctcaacttcactagagctggtaatattgccaactatatgagccttgcagaggttgattct 453 Query: 423 atatatttttcaatccctgtgaacttcatctttatgggattt 464 |||||| ||||| | ||||| |||||||||||||| |||||| Sbjct: 454 atatatctttcagtacctgtaaacttcatctttataggattt 495
>dbj|AK066401.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013063N21, full insert sequence Length = 3439 Score = 196 bits (99), Expect = 4e-47 Identities = 327/402 (81%), Gaps = 12/402 (2%) Strand = Plus / Plus Query: 63 gccgctgtccggcgccgcggcgccccggccggcgagatgaggagccccttccggctaccc 122 ||||| ||||| ||||||||| | |||||||||| |||||| ||||| | ||| | | Sbjct: 106 gccgccgtccgccgccgcggcactccggccggcgggatgag---cccctccgggcggctc 162 Query: 123 gccgcccccttcgtatccgcgctcgtcctcctcatgctcgctctggttccgtccccggag 182 ||||||||||||| | | | |||||||| || || |||||||||| ||||| |||||| Sbjct: 163 cccgcccccttcgtcttccccctcgtcctgctgctgttcgctctggtgccgtcaccggag 222 Query: 183 gcggccgagaccaccacaccggggacccggacgcgcaagctcggccccggcggctcttcc 242 ||||||||| |||| |||||||| |||||||||||| ||||| || || || Sbjct: 223 gcggccgagtccacg---ccggggacgcggacgcgcaagatcggcggcgccg------cc 273 Query: 243 tcggtgttctcgctcttcaacctcaagccccagagcaagttctggacggaatcggtcatg 302 |||||||||||||||||||||||||||||||||| |||||||||| |||| || ||||| Sbjct: 274 tcggtgttctcgctcttcaacctcaagccccagaacaagttctggtcggagtccgtcatc 333 Query: 303 cggacagagttcgatgacctggtgggctcgaagtcaagggactccatcaacgtggggctt 362 || || || ||||||||| ||| |||||| | || ||||||||| ||| || ||| Sbjct: 334 cgcacggaattcgatgacttggagggctcaacatcgcgggactccagcaagaaggcgctg 393 Query: 363 ctgaacttcacaagagctggtaatgttgcaaactatatgaacctggcggaagttgattcg 422 || |||||||| |||||||||||| |||| |||||||||| ||| || || |||||||| Sbjct: 394 ctcaacttcactagagctggtaatattgccaactatatgagccttgcagaggttgattct 453 Query: 423 atatatttttcaatccctgtgaacttcatctttatgggattt 464 |||||| ||||| | ||||| |||||||||||||| |||||| Sbjct: 454 atatatctttcagtacctgtaaacttcatctttataggattt 495
>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete sequence Length = 35954743 Score = 91.7 bits (46), Expect = 2e-15 Identities = 110/131 (83%), Gaps = 9/131 (6%) Strand = Plus / Plus Query: 171 ccgtccccggaggcggccgagaccaccacaccggggacccggacgcgcaagctcggcccc 230 ||||| ||||||||||||||| |||| |||||||| |||||||||||| ||||| | Sbjct: 15936110 ccgtcaccggaggcggccgagtccacg---ccggggacgcggacgcgcaagatcggcggc 15936166 Query: 231 ggcggctcttcctcggtgttctcgctcttcaacctcaagccccagagcaagttctggacg 290 | || |||||||||||||||||||||||||||||||||||| |||||||||| || Sbjct: 15936167 gccg------cctcggtgttctcgctcttcaacctcaagccccagaacaagttctggtcg 15936220 Query: 291 gaatcggtcat 301 || || ||||| Sbjct: 15936221 gagtccgtcat 15936231 Score = 71.9 bits (36), Expect = 2e-09 Identities = 72/84 (85%) Strand = Plus / Plus Query: 381 ggtaatgttgcaaactatatgaacctggcggaagttgattcgatatatttttcaatccct 440 |||||| |||| |||||||||| ||| || || |||||||| |||||| ||||| | ||| Sbjct: 15937264 ggtaatattgccaactatatgagccttgcagaggttgattctatatatctttcagtacct 15937323 Query: 441 gtgaacttcatctttatgggattt 464 || |||||||||||||| |||||| Sbjct: 15937324 gtaaacttcatctttataggattt 15937347 Score = 42.1 bits (21), Expect = 1.6 Identities = 86/107 (80%), Gaps = 3/107 (2%) Strand = Plus / Plus Query: 63 gccgctgtccggcgccgcggcgccccggccggcgagatgaggagccccttccggctaccc 122 ||||| ||||| ||||||||| | |||||||||| |||||| ||||| | ||| | | Sbjct: 15935906 gccgccgtccgccgccgcggcactccggccggcgggatgag---cccctccgggcggctc 15935962 Query: 123 gccgcccccttcgtatccgcgctcgtcctcctcatgctcgctctggt 169 ||||||||||||| | | | |||||||| || ||||||||||||| Sbjct: 15935963 cccgcccccttcgtcttccccctcgtcctgctgctgctcgctctggt 15936009
>dbj|AP004131.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC clone:OJ1057_F01 Length = 120026 Score = 91.7 bits (46), Expect = 2e-15 Identities = 110/131 (83%), Gaps = 9/131 (6%) Strand = Plus / Plus Query: 171 ccgtccccggaggcggccgagaccaccacaccggggacccggacgcgcaagctcggcccc 230 ||||| ||||||||||||||| |||| |||||||| |||||||||||| ||||| | Sbjct: 79785 ccgtcaccggaggcggccgagtccacg---ccggggacgcggacgcgcaagatcggcggc 79841 Query: 231 ggcggctcttcctcggtgttctcgctcttcaacctcaagccccagagcaagttctggacg 290 | || |||||||||||||||||||||||||||||||||||| |||||||||| || Sbjct: 79842 gccg------cctcggtgttctcgctcttcaacctcaagccccagaacaagttctggtcg 79895 Query: 291 gaatcggtcat 301 || || ||||| Sbjct: 79896 gagtccgtcat 79906 Score = 71.9 bits (36), Expect = 2e-09 Identities = 72/84 (85%) Strand = Plus / Plus Query: 381 ggtaatgttgcaaactatatgaacctggcggaagttgattcgatatatttttcaatccct 440 |||||| |||| |||||||||| ||| || || |||||||| |||||| ||||| | ||| Sbjct: 80939 ggtaatattgccaactatatgagccttgcagaggttgattctatatatctttcagtacct 80998 Query: 441 gtgaacttcatctttatgggattt 464 || |||||||||||||| |||||| Sbjct: 80999 gtaaacttcatctttataggattt 81022 Score = 42.1 bits (21), Expect = 1.6 Identities = 86/107 (80%), Gaps = 3/107 (2%) Strand = Plus / Plus Query: 63 gccgctgtccggcgccgcggcgccccggccggcgagatgaggagccccttccggctaccc 122 ||||| ||||| ||||||||| | |||||||||| |||||| ||||| | ||| | | Sbjct: 79581 gccgccgtccgccgccgcggcactccggccggcgggatgag---cccctccgggcggctc 79637 Query: 123 gccgcccccttcgtatccgcgctcgtcctcctcatgctcgctctggt 169 ||||||||||||| | | | |||||||| || ||||||||||||| Sbjct: 79638 cccgcccccttcgtcttccccctcgtcctgctgctgctcgctctggt 79684
>gb|BT013620.1| Lycopersicon esculentum clone 132421F, mRNA sequence Length = 2857 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Plus Query: 435 atccctgtgaacttcatcttt 455 ||||||||||||||||||||| Sbjct: 242 atccctgtgaacttcatcttt 262
>emb|X87988.2|STSTARSYN Solanum tuberosum mRNA for soluble starch synthase II precursor (ssII gene) Length = 2631 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Plus Query: 435 atccctgtgaacttcatcttt 455 ||||||||||||||||||||| Sbjct: 27 atccctgtgaacttcatcttt 47
>gb|AC122544.1| Genomic sequence for Lycopersicon esculentum, clone L136C6, complete sequence Length = 121637 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Plus Query: 435 atccctgtgaacttcatcttt 455 ||||||||||||||||||||| Sbjct: 118870 atccctgtgaacttcatcttt 118890
>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete sequence Length = 29644043 Score = 42.1 bits (21), Expect = 1.6 Identities = 24/25 (96%) Strand = Plus / Minus Query: 74 gcgccgcggcgccccggccggcgag 98 |||||||||||||| |||||||||| Sbjct: 28392563 gcgccgcggcgcccgggccggcgag 28392539
>dbj|AP004300.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, PAC clone:P0470D12 Length = 157248 Score = 42.1 bits (21), Expect = 1.6 Identities = 24/25 (96%) Strand = Plus / Minus Query: 74 gcgccgcggcgccccggccggcgag 98 |||||||||||||| |||||||||| Sbjct: 118126 gcgccgcggcgcccgggccggcgag 118102
>gb|CP000143.1| Rhodobacter sphaeroides 2.4.1 chromosome 1, complete genome Length = 3188609 Score = 40.1 bits (20), Expect = 6.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 215 gcgcaagctcggccccggcg 234 |||||||||||||||||||| Sbjct: 3025107 gcgcaagctcggccccggcg 3025126
>ref|XM_957564.1| Neurospora crassa OR74A hypothetical protein ( (AF401237) cystathionine beta-lyase [Neurospora crassa OR74A] ) (NCU07987.1) partial mRNA Length = 1374 Score = 40.1 bits (20), Expect = 6.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 180 gaggcggccgagaccaccac 199 |||||||||||||||||||| Sbjct: 1333 gaggcggccgagaccaccac 1352
>ref|XM_328692.1| Neurospora crassa OR74A hypothetical protein ( (AF401237) cystathionine beta-lyase [Neurospora crassa OR74A] ) (NCU07987.1) partial mRNA Length = 1374 Score = 40.1 bits (20), Expect = 6.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 180 gaggcggccgagaccaccac 199 |||||||||||||||||||| Sbjct: 1333 gaggcggccgagaccaccac 1352
>gb|CP000115.1| Nitrobacter winogradskyi Nb-255, complete genome Length = 3402093 Score = 40.1 bits (20), Expect = 6.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 65 cgctgtccggcgccgcggcg 84 |||||||||||||||||||| Sbjct: 2905520 cgctgtccggcgccgcggcg 2905501
>ref|XM_534089.2| PREDICTED: Canis familiaris similar to HMT1 hnRNP methyltransferase-like 3, transcript variant 1 (LOC476887), mRNA Length = 1864 Score = 40.1 bits (20), Expect = 6.3 Identities = 23/24 (95%) Strand = Plus / Minus Query: 70 tccggcgccgcggcgccccggccg 93 |||| ||||||||||||||||||| Sbjct: 167 tccgccgccgcggcgccccggccg 144
>emb|AL356440.11| Human DNA sequence from clone RP1-299F11 on chromosome 11 Contains part of a gene similar to D.melanogaster protein (CG14464), STSs, GSSs and a CpG island, complete sequence Length = 54446 Score = 40.1 bits (20), Expect = 6.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 169 ttccgtccccggaggcggcc 188 |||||||||||||||||||| Sbjct: 43010 ttccgtccccggaggcggcc 42991
>gb|AF401237.1|AF401237 Neurospora crassa cystathionine beta-lyase (met-2) gene, complete cds Length = 2875 Score = 40.1 bits (20), Expect = 6.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 180 gaggcggccgagaccaccac 199 |||||||||||||||||||| Sbjct: 2638 gaggcggccgagaccaccac 2657
>dbj|BA000030.2| Streptomyces avermitilis MA-4680 genomic DNA, complete genome Length = 9025608 Score = 40.1 bits (20), Expect = 6.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 140 cgcgctcgtcctcctcatgc 159 |||||||||||||||||||| Sbjct: 7474005 cgcgctcgtcctcctcatgc 7473986
>gb|CP000251.1| Anaeromyxobacter dehalogenans 2CP-C, complete genome Length = 5013479 Score = 40.1 bits (20), Expect = 6.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 74 gcgccgcggcgccccggccg 93 |||||||||||||||||||| Sbjct: 1342244 gcgccgcggcgccccggccg 1342225 Score = 40.1 bits (20), Expect = 6.3 Identities = 23/24 (95%) Strand = Plus / Plus Query: 72 cggcgccgcggcgccccggccggc 95 |||||||||||||||| ||||||| Sbjct: 77505 cggcgccgcggcgcccgggccggc 77528
>gb|AC083910.9| Mus musculus 1 BAC RP23-337F12 (Roswell Park Cancer Institute (C57BL/6J Female) Mouse BAC Library) complete sequence Length = 208408 Score = 40.1 bits (20), Expect = 6.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 374 aagagctggtaatgttgcaa 393 |||||||||||||||||||| Sbjct: 120129 aagagctggtaatgttgcaa 120148
>gb|AE016825.1| Chromobacterium violaceum ATCC 12472, complete genome Length = 4751080 Score = 40.1 bits (20), Expect = 6.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 59 cgcagccgctgtccggcgcc 78 |||||||||||||||||||| Sbjct: 2404025 cgcagccgctgtccggcgcc 2404006
>gb|AC170750.2| Mus musculus BAC clone RP23-295C23 from chromosome 1, complete sequence Length = 203110 Score = 40.1 bits (20), Expect = 6.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 374 aagagctggtaatgttgcaa 393 |||||||||||||||||||| Sbjct: 193426 aagagctggtaatgttgcaa 193445 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 3,216,419 Number of Sequences: 3902068 Number of extensions: 3216419 Number of successful extensions: 63920 Number of sequences better than 10.0: 21 Number of HSP's better than 10.0 without gapping: 21 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 63152 Number of HSP's gapped (non-prelim): 762 length of query: 464 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 442 effective length of database: 17,147,199,772 effective search space: 7579062299224 effective search space used: 7579062299224 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
