>DYH5_MOUSE (Q8VHE6) Ciliary dynein heavy chain 5 (Axonemal beta dynein heavy|
            chain 5) (Mdnah5)
          Length = 4621

 Score = 34.3 bits (77), Expect = 0.14
 Identities = 27/104 (25%), Positives = 45/104 (43%), Gaps = 11/104 (10%)
 Frame = +2

Query: 59   IHLEVHIDRWVRFVDLLVSARLSFKH*SSFMTPEYIY-PYTVEEAAQTIIP--------Y 211
            +HL    D      D  V+   +++H  S  TPEY+Y P T  E    ++P        +
Sbjct: 2513 LHLPQLTDAGDTMFDYYVAPNGTWRH-WSLCTPEYVYPPDTTPEYGSILVPNVDNVRTDF 2571

Query: 212  LEDTSSNADKAIYFDGWEGLAASTVLRDIAK--DPPPSLLKKFN 337
            L  T +   KA+   G +G A + +++      DP   ++K  N
Sbjct: 2572 LIKTIAKQGKAVLLIGEQGTAKTVIIKGFMSKFDPESHMVKNLN 2615

>SYGB_AQUAE (O67898) Glycyl-tRNA synthetase beta chain (EC 6.1.1.14)|
           (Glycine--tRNA ligase beta chain) (GlyRS)
          Length = 664

 Score = 33.1 bits (74), Expect = 0.31
 Identities = 21/86 (24%), Positives = 44/86 (51%), Gaps = 6/86 (6%)
 Frame = +2

Query: 167 YPYTVEEAAQTIIPYLEDTSSNADKAIY-----FDGWEGLAASTVLRDIAKDPP-PSLLK 328
           YP  VE   Q +I YLED   +  +A+       + ++ + +  VL + +K P  PS+++
Sbjct: 504 YPKLVEFLKQRLISYLEDYPVDIVRAVLNVYSPMEPYKVINSVRVLYEASKSPEFPSVVE 563

Query: 329 KFNKIIHVDCSRWKSRRALQRTIAQE 406
              ++I +    WK+    ++ +++E
Sbjct: 564 AAKRVIRIIPKDWKNYEVDEKLLSEE 589

>RAD32_SCHPO (Q09683) DNA repair protein rad32|
          Length = 649

 Score = 31.6 bits (70), Expect = 0.91
 Identities = 24/86 (27%), Positives = 35/86 (40%)
 Frame = +2

Query: 167 YPYTVEEAAQTIIPYLEDTSSNADKAIYFDGWEGLAASTVLRDIAKDPPPSLLKKFNKII 346
           Y    EE ++T I   E T      +   D    LA S+   ++   P P+LLKK NK  
Sbjct: 523 YEELPEEVSETSINIAEHTPVLKHTSSLLDHHSPLATSSSEHEMEATPSPALLKKTNKRR 582

Query: 347 HVDCSRWKSRRALQRTIAQELKLPQR 424
            +  S  K      +   +  K+P R
Sbjct: 583 ELPSSLTKKNTRTPQRSKEVKKVPAR 608

>FA47A_HUMAN (Q5JRC9) Protein FAM47A|
          Length = 778

 Score = 30.0 bits (66), Expect = 2.7
 Identities = 12/39 (30%), Positives = 16/39 (41%)
 Frame = -3

Query: 332 ISSEAMAEDLWLCL*APSKRPALPIHQNRWPCLHYCLYP 216
           +  E   ED W C     K   +P    + PC  +CL P
Sbjct: 153 LDPERELEDAWACCETQEKTTEVPTEPGKHPCGEFCLKP 191

>RPOB_RALSO (Q8XUZ8) DNA-directed RNA polymerase beta chain (EC 2.7.7.6) (RNAP|
           beta subunit) (Transcriptase beta chain) (RNA polymerase
           beta subunit)
          Length = 1368

 Score = 29.6 bits (65), Expect = 3.5
 Identities = 17/57 (29%), Positives = 30/57 (52%), Gaps = 5/57 (8%)
 Frame = +2

Query: 77  IDRWVRFVDLLVSARLSFKH*SSFMTPEYIY-----PYTVEEAAQTIIPYLEDTSSN 232
           +D+    VD LVSAR   +  +  +TP+ +      P  +  AA +++P+LE   +N
Sbjct: 627 VDKDGNLVDELVSAREGSERETRMVTPDRVQYIDVAPSQIVSAAASLVPFLEHDDAN 683

>ATR_ORYSA (Q5Z987) Serine/threonine-protein kinase ATR (EC 2.7.11.1)|
          Length = 2710

 Score = 28.5 bits (62), Expect = 7.7
 Identities = 23/88 (26%), Positives = 40/88 (45%), Gaps = 7/88 (7%)
 Frame = +2

Query: 14  VLTVSFITGASCMQLIHLEVHIDRWVRFVDLLVSARLS-------FKH*SSFMTPEYIYP 172
           +LT++ + G  C Q     VHI+  V  VD+ +S   +       FK  S F   +++Y 
Sbjct: 724 ILTLNLLRGFWCPQCDVRTVHIEDQVPIVDIALSEDKNIDFKINMFKAHSLFF--KFLYA 781

Query: 173 YTVEEAAQTIIPYLEDTSSNADKAIYFD 256
            T EE   +I+  L     ++ + +  D
Sbjct: 782 ETSEECIVSIVEVLPRILKHSSRDVLLD 809

>VG07_BPT4 (P19061) Baseplate structural protein Gp7 (Baseplate wedge protein|
           7)
          Length = 1032

 Score = 28.5 bits (62), Expect = 7.7
 Identities = 12/35 (34%), Positives = 21/35 (60%), Gaps = 1/35 (2%)
 Frame = -1

Query: 343 YLVEFLQKRWRRIFGYVSKHRRSGQP-FPSIKIDG 242
           Y++   +K W+R+FG   + RR  QP + ++  DG
Sbjct: 404 YVLNHDEKTWKRVFGNTEEERRRIQPGYANMSTDG 438

>CABYR_MACFA (Q4R3X7) Calcium-binding tyrosine phosphorylation-regulated protein|
          Length = 487

 Score = 28.5 bits (62), Expect = 7.7
 Identities = 13/21 (61%), Positives = 15/21 (71%)
 Frame = +1

Query: 361 EVEKPTSTPEDNRTRTEASSK 423
           ++EK T T EDN TRTE S K
Sbjct: 98  QMEKSTDTDEDNVTRTEYSDK 118

>CABYR_HUMAN (O75952) Calcium-binding tyrosine phosphorylation-regulated protein|
           (Calcium-binding protein 86) (Testis-specific
           calcium-binding protein CBP86) (Fibrousheathin-2)
           (FSP-2)
          Length = 493

 Score = 28.5 bits (62), Expect = 7.7
 Identities = 13/21 (61%), Positives = 15/21 (71%)
 Frame = +1

Query: 361 EVEKPTSTPEDNRTRTEASSK 423
           ++EK T T EDN TRTE S K
Sbjct: 98  QMEKSTDTDEDNVTRTEYSDK 118


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 67,170,189
Number of Sequences: 219361
Number of extensions: 1342027
Number of successful extensions: 3191
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 3135
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3191
length of database: 80,573,946
effective HSP length: 101
effective length of database: 58,418,485
effective search space used: 2628831825
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)