ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bastl32b03 |
|---|---|
| Clone Library Name | barley_pub |
>VE2_HPV20 (P50766) Regulatory protein E2| Length = 497 Score = 38.9 bits (89), Expect = 0.007 Identities = 35/106 (33%), Positives = 45/106 (42%), Gaps = 4/106 (3%) Frame = +3 Query: 150 PLSYNQRATWTMSSTQSRPRCSAQ*RAGQRPHLTSRSLGSLRTKIRRSSCRSLQPRSGSA 329 P S +R T T +SR + ++ R+ R SRS + RRS RS RSGS Sbjct: 250 PSSRTRRTTQTRQRRRSRSKSKSKSRSRSRSRHRSRSRSRSESPRRRSRYRS---RSGSR 306 Query: 330 GALAL----LTSRAPCASAGAASSTGRLFR*STRRRSHAGSXKTGS 455 G +AL T+ AG S T S R R G + GS Sbjct: 307 GRVALRAITTTTTTTTRRAGGGSPTSTSSTTSQRSRQLRGGGRGGS 352
>VE2_HPV25 (P36787) Regulatory protein E2| Length = 502 Score = 32.7 bits (73), Expect = 0.49 Identities = 27/91 (29%), Positives = 45/91 (49%), Gaps = 2/91 (2%) Frame = +3 Query: 186 SSTQSRPRCSAQ*RAGQRPHLTSRSLGSLRTKIRRSSCRSLQPRSGS--AGALALLTSRA 359 S ++SR R +Q R+ R SRS ++ RRS RS + S + G + T+ + Sbjct: 267 SRSKSRSRSRSQSRSRIRSRSRSRSRSESQSSKRRSRSRSRRKTSATRGRGPGSPTTTTS 326 Query: 360 PCASAGAASSTGRLFR*STRRRSHAGSXKTG 452 A+ ++++ + S R RS AGS + G Sbjct: 327 DRAARSPSTTSSATSQRSQRSRSRAGSSRGG 357
>CTRO_MOUSE (P49025) Citron Rho-interacting kinase (EC 2.7.11.1) (CRIK)| (Rho-interacting, serine/threonine-protein kinase 21) Length = 2055 Score = 32.7 bits (73), Expect = 0.49 Identities = 30/102 (29%), Positives = 45/102 (44%), Gaps = 2/102 (1%) Frame = +3 Query: 150 PLSYNQRATWTMSSTQSRPRCSAQ*RAGQRPHLTSRSLGSLRTKIRR--SSCRSLQPRSG 323 P +YN+ T ++S+ + P + R PH G RT++RR S R L+ Sbjct: 1952 PPTYNEHITKRVASSPAPPEGPSHPREPSTPHRYRDREG--RTELRRDKSPGRPLEREKS 2009 Query: 324 SAGALALLTSRAPCASAGAASSTGRLFR*STRRRSHAGSXKT 449 L+ R+P GRLF S+R R AG+ +T Sbjct: 2010 PGRMLSTRRERSP----------GRLFEDSSRGRLPAGAVRT 2041
>CTRO_HUMAN (O14578) Citron Rho-interacting kinase (EC 2.7.11.1) (CRIK)| (Rho-interacting, serine/threonine-protein kinase 21) Length = 2027 Score = 32.0 bits (71), Expect = 0.83 Identities = 29/102 (28%), Positives = 44/102 (43%), Gaps = 2/102 (1%) Frame = +3 Query: 150 PLSYNQRATWTMSSTQSRPRCSAQ*RAGQRPHLTSRSLGSLRTKIRR--SSCRSLQPRSG 323 P +YN+ T ++S+ + P + R PH RT++RR S R L+ Sbjct: 1926 PPTYNEHITKRVASSPAPPEGPSHPREPSTPHRYREG----RTELRRDKSPGRPLEREKS 1981 Query: 324 SAGALALLTSRAPCASAGAASSTGRLFR*STRRRSHAGSXKT 449 L+ R+P GRLF S+R R AG+ +T Sbjct: 1982 PGRMLSTRRERSP----------GRLFEDSSRGRLPAGAVRT 2013
>HMPB_DROME (P31264) Homeotic protein proboscipedia| Length = 782 Score = 31.2 bits (69), Expect = 1.4 Identities = 17/44 (38%), Positives = 19/44 (43%), Gaps = 4/44 (9%) Frame = +1 Query: 112 HHPQPPCIARAPSHYRITSELL----GQCPPPSRAQGVRLNDAP 231 HH Q P A AP H S + G PPPS G +N P Sbjct: 690 HHVQVPAQAHAPIHAHHNSAAIPGGVGVGPPPSHIHGFAINGGP 733
>SCND2_HUMAN (Q9GZW5) SCAN domain-containing protein 2| Length = 306 Score = 30.8 bits (68), Expect = 1.9 Identities = 25/95 (26%), Positives = 36/95 (37%) Frame = +3 Query: 168 RATWTMSSTQSRPRCSAQ*RAGQRPHLTSRSLGSLRTKIRRSSCRSLQPRSGSAGALALL 347 R+ W M++ R A G R S+ RS R+G + + Sbjct: 148 RSPWPMTAAGPASRARAS-ETGSTASCAGRWRTCCAAAAAPSAARSASARTGRSTSSCAR 206 Query: 348 TSRAPCASAGAASSTGRLFR*STRRRSHAGSXKTG 452 +RAP A+ GA + T R RRR G + G Sbjct: 207 AARAPSATEGALTRTPAPRRPLQRRRPGTGPWRPG 241
>VE2_HPV21 (P50767) Regulatory protein E2| Length = 503 Score = 30.4 bits (67), Expect = 2.4 Identities = 32/104 (30%), Positives = 43/104 (41%), Gaps = 2/104 (1%) Frame = +3 Query: 150 PLSYNQRATWTMSSTQSRPRCSAQ*RAGQRPHLTSRSLGSLRTKIRRSSCRSLQP--RSG 323 P S +R T T +SR + + R+ R L SRS R+ R S S QP R Sbjct: 251 PSSRTRRTTQTHQRRRSRSKSRS--RSRSRSRLRSRSRSRSRSYSRSRSQSSDQPQYRFR 308 Query: 324 SAGALALLTSRAPCASAGAASSTGRLFR*STRRRSHAGSXKTGS 455 S G ++L+T+ + ST R S GS T S Sbjct: 309 SGGQVSLITTATTTTTTATNYST---------RGSGRGSSSTSS 343
>HRK_RAT (P62817) Activator of apoptosis harakiri (Neuronal death protein| DP5) (BH3-interacting domain protein 3) Length = 92 Score = 30.4 bits (67), Expect = 2.4 Identities = 25/62 (40%), Positives = 27/62 (43%), Gaps = 1/62 (1%) Frame = +1 Query: 268 PCARRSGEAPVALCSQGQAVQGPWLC*LRVRLARVQGQR-QALAACSGDPREGDHMRARX 444 PC R G P A+C G A G LR A+V R QAL GD MR R Sbjct: 3 PCPRHRGRGPPAVCGCGDARPG-----LRWAAAQVTALRLQAL----GDELHRRAMRRRA 53 Query: 445 RP 450 RP Sbjct: 54 RP 55
>HRK_MOUSE (P62816) Activator of apoptosis harakiri (Neuronal death protein| DP5) (BH3-interacting domain protein 3) Length = 92 Score = 30.4 bits (67), Expect = 2.4 Identities = 25/62 (40%), Positives = 27/62 (43%), Gaps = 1/62 (1%) Frame = +1 Query: 268 PCARRSGEAPVALCSQGQAVQGPWLC*LRVRLARVQGQR-QALAACSGDPREGDHMRARX 444 PC R G P A+C G A G LR A+V R QAL GD MR R Sbjct: 3 PCPRHRGRGPPAVCGCGDARPG-----LRWAAAQVTALRLQAL----GDELHRRAMRRRA 53 Query: 445 RP 450 RP Sbjct: 54 RP 55
>RPOB_THECE (P31814) DNA-directed RNA polymerase subunit B (EC 2.7.7.6)| Length = 1122 Score = 30.0 bits (66), Expect = 3.2 Identities = 16/51 (31%), Positives = 29/51 (56%) Frame = +2 Query: 308 AAKVRQCRGLGSVDFACALRECRGSVKHWPLVPVIHAKAITCGLGEDRIAG 460 A +Q GLG +F + + RG + H+P VP+++++ + E+R AG Sbjct: 671 AGMAKQSLGLGWANFRIRV-DTRGHLMHYPQVPLVNSRIMKAVGFEERPAG 720
>MDN1_HUMAN (Q9NU22) Midasin (MIDAS-containing protein)| Length = 5596 Score = 29.6 bits (65), Expect = 4.1 Identities = 19/47 (40%), Positives = 25/47 (53%) Frame = +3 Query: 123 TSLHRACSLPLSYNQRATWTMSSTQSRPRCSAQ*RAGQRPHLTSRSL 263 T LH+ CSLP SY + M QS R S+ AG++ +T R L Sbjct: 1230 TILHKRCSLPPSYCSKLVKVMLDLQSYRRSSSV-FAGKQGFITLRDL 1275
>SECA_STRLI (P0A4G7) Preprotein translocase secA subunit| Length = 947 Score = 29.3 bits (64), Expect = 5.4 Identities = 14/30 (46%), Positives = 21/30 (70%) Frame = -3 Query: 394 PVLDAAPALAQGAREVNRAKAPALPDLGCK 305 PV DAAP+L +GA++ A+A A P++ K Sbjct: 860 PVEDAAPSLDKGAQDAVPAQAGARPEIRAK 889
>SECA_STRCO (P0A4G6) Preprotein translocase secA subunit| Length = 947 Score = 29.3 bits (64), Expect = 5.4 Identities = 14/30 (46%), Positives = 21/30 (70%) Frame = -3 Query: 394 PVLDAAPALAQGAREVNRAKAPALPDLGCK 305 PV DAAP+L +GA++ A+A A P++ K Sbjct: 860 PVEDAAPSLDKGAQDAVPAQAGARPEIRAK 889
>TRIB3_RAT (Q9WTQ6) Tribbles homolog 3 (TRB-3) (Neuronal cell death-inducible| putative kinase) Length = 349 Score = 29.3 bits (64), Expect = 5.4 Identities = 21/52 (40%), Positives = 29/52 (55%) Frame = -3 Query: 394 PVLDAAPALAQGAREVNRAKAPALPDLGCKERQELLRIFVRKEPSERLVK*G 239 P D+ PAL G ++ R ALP+ + L+R +R+EPSERLV G Sbjct: 255 PFQDSEPALLFG--KIRRGTF-ALPEGLSASARCLIRCLLRREPSERLVALG 303
>APX8_ORYSA (Q69SV0) Probable L-ascorbate peroxidase 8, chloroplast precursor| (EC 1.11.1.11) Length = 478 Score = 29.3 bits (64), Expect = 5.4 Identities = 25/67 (37%), Positives = 31/67 (46%) Frame = +3 Query: 201 RPRCSAQ*RAGQRPHLTSRSLGSLRTKIRRSSCRSLQPRSGSAGALALLTSRAPCASAGA 380 RPR SA A TS LR++ R ++ RSG AGA A R A+A A Sbjct: 25 RPRVSAAAAASFPCCSTSAGGLRLRSRPSRFPQKAATTRSGRAGAGARAVVRCMAAAAVA 84 Query: 381 ASSTGRL 401 AS +L Sbjct: 85 ASDAAQL 91
>EXOC7_HUMAN (Q9UPT5) Exocyst complex component 7 (Exocyst complex component| Exo70) Length = 735 Score = 28.5 bits (62), Expect = 9.2 Identities = 9/23 (39%), Positives = 17/23 (73%) Frame = -3 Query: 214 EHLGRDWVEDIVQVARWLYDSGR 146 EHL ++D+++++RWL + GR Sbjct: 189 EHLPESVLQDVIRISRWLVEYGR 211
>TRME_SALTY (Q8ZKY3) tRNA modification GTPase trmE| Length = 454 Score = 28.5 bits (62), Expect = 9.2 Identities = 13/37 (35%), Positives = 18/37 (48%) Frame = +1 Query: 160 ITSELLGQCPPPSRAQGVRLNDAPGSGLT*QVAHWVP 270 + E+LG+ P P A + D GS L +A W P Sbjct: 32 VAQEVLGKLPKPRYADYLPFKDVDGSALDQGIALWFP 68
>TRME_SALTI (Q8Z2N8) tRNA modification GTPase trmE| Length = 454 Score = 28.5 bits (62), Expect = 9.2 Identities = 13/37 (35%), Positives = 18/37 (48%) Frame = +1 Query: 160 ITSELLGQCPPPSRAQGVRLNDAPGSGLT*QVAHWVP 270 + E+LG+ P P A + D GS L +A W P Sbjct: 32 VAQEVLGKLPKPRYADYLPFKDVDGSALDQGIALWFP 68
>EXOC7_RAT (O54922) Exocyst complex component 7 (Exocyst complex component| Exo70) (rExo70) Length = 653 Score = 28.5 bits (62), Expect = 9.2 Identities = 9/23 (39%), Positives = 17/23 (73%) Frame = -3 Query: 214 EHLGRDWVEDIVQVARWLYDSGR 146 EHL ++D+++++RWL + GR Sbjct: 189 EHLPESVLQDVIRISRWLVEYGR 211 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 62,663,549 Number of Sequences: 219361 Number of extensions: 1237851 Number of successful extensions: 3718 Number of sequences better than 10.0: 19 Number of HSP's better than 10.0 without gapping: 3609 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 3717 length of database: 80,573,946 effective HSP length: 103 effective length of database: 57,979,763 effective search space used: 3130907202 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
