ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bastl32a11 |
|---|---|
| Clone Library Name | barley_pub |
>IF3A_MAIZE (Q9XHR2) Eukaryotic translation initiation factor 3 subunit 10| (eIF-3 theta) (Eukaryotic translation initiation factor 3 large subunit) (eIF3a) Length = 962 Score = 216 bits (551), Expect = 2e-56 Identities = 108/119 (90%), Positives = 115/119 (96%) Frame = +1 Query: 121 MATFAKPENALKRAEELIHVGQKQAALQALHDLITSKRYRSWQKPLEKIMMKYVELCVDL 300 MATFAKPENALKRAEELIHVGQKQ+ALQALHDLITSKRYRSWQKPLEKIMMKYVELCVDL Sbjct: 1 MATFAKPENALKRAEELIHVGQKQSALQALHDLITSKRYRSWQKPLEKIMMKYVELCVDL 60 Query: 301 RKGRFAKDGLIQYRIVCQQANVSSLEEVIXHFMQLSNEKAEEARNQAQALEDALDVKIL 477 RKGRFAKDGLIQYRIVCQQ NVSSLE+VI HFMQLSNEKAE+A++Q +ALEDALDV+ L Sbjct: 61 RKGRFAKDGLIQYRIVCQQVNVSSLEDVIKHFMQLSNEKAEQAKSQVEALEDALDVEDL 119
>IF3A_TOBAC (Q40554) Eukaryotic translation initiation factor 3 subunit 10| (eIF-3 theta) (Eukaryotic translation initiation factor 3 large subunit) (eIF3a) (PNLA-35) Length = 958 Score = 197 bits (500), Expect = 2e-50 Identities = 98/119 (82%), Positives = 109/119 (91%) Frame = +1 Query: 121 MATFAKPENALKRAEELIHVGQKQAALQALHDLITSKRYRSWQKPLEKIMMKYVELCVDL 300 MATFAKPENALKRAEELI VGQKQ ALQALHDLITS+RYR+WQK LE+IM KYVELCVD+ Sbjct: 1 MATFAKPENALKRAEELITVGQKQEALQALHDLITSRRYRAWQKTLERIMFKYVELCVDM 60 Query: 301 RKGRFAKDGLIQYRIVCQQANVSSLEEVIXHFMQLSNEKAEEARNQAQALEDALDVKIL 477 R+GRFAKDGLIQYRIVCQQ N++SLEEVI HFM L+ E+AE ARNQAQALE+ALDV+ L Sbjct: 61 RRGRFAKDGLIQYRIVCQQVNINSLEEVIKHFMHLATERAELARNQAQALEEALDVEDL 119
>IF3A_ARATH (Q9LD55) Eukaryotic translation initiation factor 3 subunit 10| (eIF-3 theta) (Eukaryotic translation initiation factor 3 large subunit) (eIF3a) (p114) Length = 987 Score = 195 bits (496), Expect = 5e-50 Identities = 97/123 (78%), Positives = 110/123 (89%) Frame = +1 Query: 121 MATFAKPENALKRAEELIHVGQKQAALQALHDLITSKRYRSWQKPLEKIMMKYVELCVDL 300 MA FAKPENALKRA+ELI+VGQKQ ALQALHDLITSKRYR+WQKPLEKIM KY++LCVDL Sbjct: 1 MANFAKPENALKRADELINVGQKQDALQALHDLITSKRYRAWQKPLEKIMFKYLDLCVDL 60 Query: 301 RKGRFAKDGLIQYRIVCQQANVSSLEEVIXHFMQLSNEKAEEARNQAQALEDALDVKILS 480 ++GRFAKDGLIQYRIVCQQ NVSSLEEVI HF+ L+ +KAE+AR+QA ALE+ALDV L Sbjct: 61 KRGRFAKDGLIQYRIVCQQVNVSSLEEVIKHFLHLATDKAEQARSQADALEEALDVDDLE 120 Query: 481 *QR 489 R Sbjct: 121 ADR 123
>IF3A_MOUSE (P23116) Eukaryotic translation initiation factor 3 subunit 10| (eIF-3 theta) (eIF3 p167) (eIF3 p180) (eIF3 p185) (eIF3a) (p162 protein) (Centrosomin) Length = 1344 Score = 129 bits (324), Expect = 4e-30 Identities = 61/118 (51%), Positives = 88/118 (74%) Frame = +1 Query: 124 ATFAKPENALKRAEELIHVGQKQAALQALHDLITSKRYRSWQKPLEKIMMKYVELCVDLR 303 A F +PENALKRA E + VG+KQ AL L+D++ SK++R+WQK E IM+KY+ELCVDLR Sbjct: 3 AYFQRPENALKRANEFLEVGKKQPALDVLYDVMKSKKHRTWQKIHEPIMLKYLELCVDLR 62 Query: 304 KGRFAKDGLIQYRIVCQQANVSSLEEVIXHFMQLSNEKAEEARNQAQALEDALDVKIL 477 K AK+GL QY+ +CQQ N+ SLE+V+ +++L+ EK E A+ ++Q + LD++ L Sbjct: 63 KSHLAKEGLYQYKNICQQVNIKSLEDVVRAYLKLAEEKTEAAKEESQQM--VLDIEDL 118
>IF3A_HUMAN (Q14152) Eukaryotic translation initiation factor 3 subunit 10| (eIF-3 theta) (eIF3 p167) (eIF3 p180) (eIF3 p185) (eIF3a) Length = 1382 Score = 128 bits (322), Expect = 7e-30 Identities = 60/118 (50%), Positives = 88/118 (74%) Frame = +1 Query: 124 ATFAKPENALKRAEELIHVGQKQAALQALHDLITSKRYRSWQKPLEKIMMKYVELCVDLR 303 A F +PENALKRA E + VG+KQ AL L+D++ SK++R+WQK E IM+KY+ELCVDLR Sbjct: 3 AYFQRPENALKRANEFLEVGKKQPALDVLYDVMKSKKHRTWQKIHEPIMLKYLELCVDLR 62 Query: 304 KGRFAKDGLIQYRIVCQQANVSSLEEVIXHFMQLSNEKAEEARNQAQALEDALDVKIL 477 K AK+GL QY+ +CQQ N+ SLE+V+ +++++ EK E A+ ++Q + LD++ L Sbjct: 63 KSHLAKEGLYQYKNICQQVNIKSLEDVVRAYLKMAEEKTEAAKEESQQM--VLDIEDL 118
>IF3A_CAEEL (P34339) Probable eukaryotic translation initiation factor 3| subunit 10 (eIF-3 theta) (eIF3a) (Egg-laying defective protein 45) Length = 1076 Score = 115 bits (288), Expect = 6e-26 Identities = 54/104 (51%), Positives = 76/104 (73%) Frame = +1 Query: 130 FAKPENALKRAEELIHVGQKQAALQALHDLITSKRYRSWQKPLEKIMMKYVELCVDLRKG 309 F KPE ALKRAEELI VG++ AL LHD I ++R++ W E+IM+K++ELCVDL+K Sbjct: 6 FQKPEAALKRAEELIQVGKESDALDTLHDTIKARRHKQWTTVHEQIMIKHMELCVDLKKQ 65 Query: 310 RFAKDGLIQYRIVCQQANVSSLEEVIXHFMQLSNEKAEEARNQA 441 AKD L QY+ + QQ NV SLE V+ HF++L+ ++ E+A+ Q+ Sbjct: 66 HLAKDALFQYKALTQQINVKSLETVVVHFLKLAEQRTEDAQKQS 109
>IF3A_SCHPO (O74760) Probable eukaryotic translation initiation factor 3 110| kDa subunit (eIF3 p110) (Translation initiation factor eIF3, p110 subunit) (eIF3a) Length = 932 Score = 100 bits (250), Expect = 2e-21 Identities = 49/106 (46%), Positives = 76/106 (71%), Gaps = 1/106 (0%) Frame = +1 Query: 136 KPENALKRAEELIHVGQKQAALQALHDLITSKRYRSWQK-PLEKIMMKYVELCVDLRKGR 312 KPEN L+ A+ELI + Q +ALQ+LH+ I KR R+ Q LE IMM+++ELCV LRKG+ Sbjct: 7 KPENVLRLADELIALDQHSSALQSLHETIVLKRSRNAQGFSLEPIMMRFIELCVHLRKGK 66 Query: 313 FAKDGLIQYRIVCQQANVSSLEEVIXHFMQLSNEKAEEARNQAQAL 450 AK+GL Y+ Q +V+++E V+ HF++L+N++ +EA+ +A + Sbjct: 67 IAKEGLYTYKNAVQNTSVTAIENVVKHFIELANKRVQEAQEKADKI 112
>IF3A_YEAST (P38249) Eukaryotic translation initiation factor 3 110 kDa subunit| (eIF3 p110) (Translation initiation factor eIF3, p110 subunit) (eIF3a) Length = 964 Score = 87.0 bits (214), Expect = 2e-17 Identities = 48/110 (43%), Positives = 73/110 (66%), Gaps = 4/110 (3%) Frame = +1 Query: 136 KPENALKRAEELIHVGQKQAALQALHDLITSKRYRSWQKP--LEKIMMKYVELCVDLRKG 309 +PENA+KRA+ELI VG+KQAALQ+LHD IT++R R W P +E ++ K++E+ V+L+KG Sbjct: 7 RPENAIKRADELISVGEKQAALQSLHDFITARRIR-WATPSTVEPVVFKFLEIGVELKKG 65 Query: 310 RFAKDGLIQYRIVCQQA--NVSSLEEVIXHFMQLSNEKAEEARNQAQALE 453 + KDGL QY+ + Q + + S+ V F+ L K + +A L+ Sbjct: 66 KLLKDGLHQYKKLIQGSTEGLVSVGAVARKFIDLVESKIASEQTRADELQ 115
>BPAEB_HUMAN (Q8WXK8) Bullous pemphigoid antigen 1, isoform 7 (Bullous pemphigoid| antigen) (BPA) (Hemidesmosomal plaque protein) (Dystonia musculorum protein) (Dystonin) (Fragment) Length = 3060 Score = 32.0 bits (71), Expect = 0.93 Identities = 20/66 (30%), Positives = 32/66 (48%) Frame = +1 Query: 190 QAALQALHDLITSKRYRSWQKPLEKIMMKYVELCVDLRKGRFAKDGLIQYRIVCQQANVS 369 QA L+ L D T R Q + ++ + C DL+ + GLI +I+CQ +S Sbjct: 1245 QAVLRGLIDYDTGIRLLETQLMISGLISPELRKCFDLKDAK--SHGLIDEQILCQLKELS 1302 Query: 370 SLEEVI 387 +E+I Sbjct: 1303 KAKEII 1308
>Y1002_RHIME (Q52969) Hypothetical sensor-like histidine kinase R01002 (EC| 2.7.13.3) Length = 525 Score = 29.6 bits (65), Expect = 4.6 Identities = 28/99 (28%), Positives = 42/99 (42%), Gaps = 1/99 (1%) Frame = +1 Query: 166 ELIHVGQKQAALQALHDL-ITSKRYRSWQKPLEKIMMKYVELCVDLRKGRFAKDGLIQYR 342 E IHV + A L+A+ L + S+R VD+R R + DG Sbjct: 149 EQIHVSDRIAFLRAIDSLRLDSERS-----------------AVDIRLERTSADGPQFAH 191 Query: 343 IVCQQANVSSLEEVIXHFMQLSNEKAEEARNQAQALEDA 459 I C+ + E + + S + +EEAR QA+A A Sbjct: 192 IYCEMTPLRDAEGNLLAIVAQSRDVSEEARLQAEAAAKA 230
>CHD1_MOUSE (P40201) Chromodomain-helicase-DNA-binding protein 1 (EC 3.6.1.-)| (ATP-dependent helicase CHD1) (CHD-1) Length = 1711 Score = 29.6 bits (65), Expect = 4.6 Identities = 28/125 (22%), Positives = 51/125 (40%), Gaps = 6/125 (4%) Frame = +1 Query: 103 RPLAPAMATFAKPENALKRAEELIHVGQKQAAL-----QALHDLITSKRYRSWQKPLEKI 267 RP+ A+ +PE L E+L H Q + + L + ++ + W+K L Sbjct: 1422 RPVKAALKQLDRPEKGLSEREQLEHTRQCLIKIGDHITECLKEYSNPEQIKQWRKNLWIF 1481 Query: 268 MMKYVELCVDLRKGRFAKDGLIQYRIVCQQANVSSLEEVIXHFMQLSN-EKAEEARNQAQ 444 + K+ E D RK I+ R QQ + + H ++ + E+ +E N Sbjct: 1482 VSKFTEF--DARKLHKLYKHAIKKRQESQQNSDQNSNVATTHVIRNPDMERLKENTNHDD 1539 Query: 445 ALEDA 459 + D+ Sbjct: 1540 SSRDS 1544
>RAD50_PYRAB (Q9UZC8) DNA double-strand break repair rad50 ATPase| Length = 880 Score = 29.3 bits (64), Expect = 6.0 Identities = 25/103 (24%), Positives = 45/103 (43%), Gaps = 6/103 (5%) Frame = +1 Query: 133 AKPENALKRAEELIHVGQKQAALQALHDLITSKRYRSWQKPLEKIMMKYVELCVDLRKGR 312 A + K+ E+ + K ++ ++ R K LE I K EL + + K + Sbjct: 201 ANEDELTKKLSEINEISSKLPPIRG-----ELEKVRENVKELESIKGKISELKIQVEKLK 255 Query: 313 FAKDGL------IQYRIVCQQANVSSLEEVIXHFMQLSNEKAE 423 K GL I+ I ++A +S LEE++ +L ++ E Sbjct: 256 GRKKGLEEKIVQIERSIEEKKAKISELEEIVKDIPKLQEKEKE 298
>BRE1B_MACFA (Q4R7K7) Ubiquitin-protein ligase BRE1B (EC 6.3.2.-) (BRE1-B) (RING| finger protein 40) Length = 1001 Score = 29.3 bits (64), Expect = 6.0 Identities = 15/37 (40%), Positives = 20/37 (54%) Frame = +1 Query: 364 VSSLEEVIXHFMQLSNEKAEEARNQAQALEDALDVKI 474 +SS EE+ +Q N+K E Q QA ED L +I Sbjct: 41 ISSTEEIDLKVLQFKNKKLAERLEQRQACEDELRERI 77
>ASPM_BOVIN (P62285) Abnormal spindle-like microcephaly-associated protein| homolog (Fragment) Length = 3371 Score = 29.3 bits (64), Expect = 6.0 Identities = 29/94 (30%), Positives = 44/94 (46%), Gaps = 3/94 (3%) Frame = +1 Query: 187 KQAALQALHDLITSKRYRSWQKPLEKIMMKYVEL---CVDLRKGRFAKDGLIQYRIVCQQ 357 +QA LQ +T +RY +K + MKYVEL V L+ + L++ RI Q+ Sbjct: 2961 RQAFLQQKSAALTIQRYIRARKAGKHQRMKYVELKKSTVVLQ--ALVRGWLVRKRISEQR 3018 Query: 358 ANVSSLEEVIXHFMQLSNEKAEEARNQAQALEDA 459 A + L F LS + + A + AL+ A Sbjct: 3019 AKIRLLHFAAAAFYHLSALRIQRAYRRHVALKHA 3052
>BRE1A_CHICK (Q5ZLS3) Ubiquitin-protein ligase BRE1A (EC 6.3.2.-) (BRE1-A) (RING| finger protein 20) Length = 984 Score = 28.9 bits (63), Expect = 7.8 Identities = 15/33 (45%), Positives = 19/33 (57%) Frame = +1 Query: 364 VSSLEEVIXHFMQLSNEKAEEARNQAQALEDAL 462 VSS EE+ +Q N K E +Q QA+ED L Sbjct: 40 VSSTEELDIRTLQTKNRKLAEMLDQRQAIEDEL 72
>TGA1A_TOBAC (P14232) TGACG-sequence-specific DNA-binding protein TGA-1A (TGA1a)| (ASF-1 protein) Length = 359 Score = 28.9 bits (63), Expect = 7.8 Identities = 26/87 (29%), Positives = 35/87 (40%), Gaps = 1/87 (1%) Frame = +1 Query: 223 TSKRYR-SWQKPLEKIMMKYVELCVDLRKGRFAKDGLIQYRIVCQQANVSSLEEVIXHFM 399 TS RY KP+EK++ + + RK R K +A V LE + Sbjct: 60 TSNRYEPETSKPVEKVLRRLAQNREAARKSRLRK-----------KAYVQQLENSKLKLI 108 Query: 400 QLSNEKAEEARNQAQALEDALDVKILS 480 QL E E AR Q + +D LS Sbjct: 109 QLEQE-LERARKQGMCVGGGVDASQLS 134
>CHD1_HUMAN (O14646) Chromodomain-helicase-DNA-binding protein 1 (EC 3.6.1.-)| (ATP-dependent helicase CHD1) (CHD-1) Length = 1709 Score = 28.9 bits (63), Expect = 7.8 Identities = 19/73 (26%), Positives = 32/73 (43%), Gaps = 5/73 (6%) Frame = +1 Query: 103 RPLAPAMATFAKPENALKRAEELIHVGQKQAAL-----QALHDLITSKRYRSWQKPLEKI 267 RP+ A+ +PE L E+L H Q + + L + ++ + W+K L Sbjct: 1422 RPVKAALKQLDRPEKGLSEREQLEHTRQCLIKIGDHITECLKEYTNPEQIKQWRKNLWIF 1481 Query: 268 MMKYVELCVDLRK 306 + K+ E D RK Sbjct: 1482 VSKFTEF--DARK 1492
>BRE1A_HUMAN (Q5VTR2) Ubiquitin-protein ligase BRE1A (EC 6.3.2.-) (BRE1-A) (RING| finger protein 20) Length = 975 Score = 28.9 bits (63), Expect = 7.8 Identities = 15/33 (45%), Positives = 19/33 (57%) Frame = +1 Query: 364 VSSLEEVIXHFMQLSNEKAEEARNQAQALEDAL 462 VSS EE+ +Q N K E +Q QA+ED L Sbjct: 40 VSSTEELDIRTLQTKNRKLAEMLDQRQAIEDEL 72 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 54,019,165 Number of Sequences: 219361 Number of extensions: 948816 Number of successful extensions: 2708 Number of sequences better than 10.0: 18 Number of HSP's better than 10.0 without gapping: 2639 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 2706 length of database: 80,573,946 effective HSP length: 103 effective length of database: 57,979,763 effective search space used: 3478785780 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
