>IRX2_MOUSE (P81066) Iroquois-class homeodomain protein IRX-2 (Iroquois|
           homeobox protein 2) (Homeodomain protein IRXA2)
          Length = 474

 Score = 30.4 bits (67), Expect = 2.9
 Identities = 18/47 (38%), Positives = 22/47 (46%), Gaps = 5/47 (10%)
 Frame = +2

Query: 173 SPCSGHAAPSPPTQPRAASPGASRRLRPVGGRVAATAP-----PRLW 298
           SP +G  AP     P AA  G S    P+G R +  AP     P+LW
Sbjct: 287 SPLTGVEAPLLSPAPEAAPRGGSGGKTPLGSRTSPGAPPPASKPKLW 333

>NDF2_RAT (Q63689) Neurogenic differentiation factor 2 (NeuroD2) (Brain bHLH|
           protein KW8)
          Length = 382

 Score = 30.4 bits (67), Expect = 2.9
 Identities = 14/37 (37%), Positives = 18/37 (48%)
 Frame = +2

Query: 185 GHAAPSPPTQPRAASPGASRRLRPVGGRVAATAPPRL 295
           G A P PP  P + +PG +R  +PV  R      P L
Sbjct: 34  GDAPPQPPPAPGSGAPGPARATKPVSLRGEEVPEPTL 70

>HRX_MOUSE (P55200) Zinc finger protein HRX (ALL-1) (Fragment)|
          Length = 3866

 Score = 30.0 bits (66), Expect = 3.7
 Identities = 15/44 (34%), Positives = 23/44 (52%)
 Frame = +2

Query: 161  VQRRSPCSGHAAPSPPTQPRAASPGASRRLRPVGGRVAATAPPR 292
            V+ +S   G  AP+P  +P+  S  ASR+      + AA  PP+
Sbjct: 1164 VEEKSEEGGAPAPAPAPEPKQVSAPASRKSSKQVSQPAAVVPPQ 1207

>PDC6I_MOUSE (Q9WU78) Programmed cell death 6-interacting protein|
           (ALG-2-interacting protein X) (ALG-2-interacting protein
           1) (E2F1-inducible protein) (Eig2)
          Length = 869

 Score = 29.6 bits (65), Expect = 4.9
 Identities = 20/67 (29%), Positives = 24/67 (35%), Gaps = 20/67 (29%)
 Frame = +2

Query: 152 PLAVQRRSPCSGHAA--------------------PSPPTQPRAASPGASRRLRPVGGRV 271
           P    + SP +GHAA                    P PP  P    P AS    P G   
Sbjct: 723 PPPAYQSSPAAGHAAAPPTPAPRTMPPAKPQPPARPPPPVLPANRVPPASAAAAPAGVGT 782

Query: 272 AATAPPR 292
           A+ APP+
Sbjct: 783 ASAAPPQ 789

>NDF2_MOUSE (Q62414) Neurogenic differentiation factor 2 (NeuroD2)|
           (NeuroD-related factor) (NDRF)
          Length = 383

 Score = 29.6 bits (65), Expect = 4.9
 Identities = 13/34 (38%), Positives = 17/34 (50%)
 Frame = +2

Query: 185 GHAAPSPPTQPRAASPGASRRLRPVGGRVAATAP 286
           G A P PP  P + +PG +R  +PV  R     P
Sbjct: 34  GDAPPQPPPAPGSGAPGPARAAKPVSLRGGEEIP 67

>AL_DROME (Q06453) Homeobox protein aristaless|
          Length = 408

 Score = 29.6 bits (65), Expect = 4.9
 Identities = 15/28 (53%), Positives = 17/28 (60%)
 Frame = +2

Query: 164 QRRSPCSGHAAPSPPTQPRAASPGASRR 247
           QR+ P   H AP PP  PRAA+P   RR
Sbjct: 351 QRQLPPPSHQAPPPP--PRAATPPEDRR 376

>CO7A1_HUMAN (Q02388) Collagen alpha-1(VII) chain precursor (Long-chain collagen)|
            (LC collagen)
          Length = 2944

 Score = 29.3 bits (64), Expect = 6.4
 Identities = 13/38 (34%), Positives = 15/38 (39%)
 Frame = +2

Query: 176  PCSGHAAPSPPTQPRAASPGASRRLRPVGGRVAATAPP 289
            P  GH  P PP  P  A P   +    + G    T PP
Sbjct: 2178 PVGGHGDPGPPGAPGLAGPAGPQGPSGLKGEPGETGPP 2215

>ATBF1_MOUSE (Q61329) Alpha-fetoprotein enhancer-binding protein (AT motif-binding|
            factor) (AT-binding transcription factor 1)
          Length = 3726

 Score = 29.3 bits (64), Expect = 6.4
 Identities = 19/44 (43%), Positives = 23/44 (52%), Gaps = 5/44 (11%)
 Frame = +2

Query: 173  SPCSGHAAPSPPTQPRA----ASPGASRRL-RPVGGRVAATAPP 289
            S  + H+  SPP    A    ASP ASR+   PVG R +A  PP
Sbjct: 3610 SQSAAHSNDSPPPPSAAPSSSASPHASRKSWPPVGSRASAAKPP 3653

>MUC13_MOUSE (P19467) Mucin-13 precursor (Cell surface antigen 114/A10)|
           (Lymphocyte antigen 64)
          Length = 573

 Score = 29.3 bits (64), Expect = 6.4
 Identities = 19/57 (33%), Positives = 27/57 (47%), Gaps = 12/57 (21%)
 Frame = +2

Query: 152 PLAVQRRSP---------CSGHAAPSPPTQPRAASPGASRR---LRPVGGRVAATAP 286
           P  VQ +SP          S     SPPT  ++ SPG+S +    +P GG  ++T P
Sbjct: 170 PTTVQSQSPGSSSQVSTTTSSSGGASPPTTVQSQSPGSSSQPGPTQPSGGASSSTVP 226

>NACAM_MOUSE (P70670) Nascent polypeptide-associated complex alpha subunit,|
            muscle-specific form (Alpha-NAC, muscle-specific form)
          Length = 2187

 Score = 28.9 bits (63), Expect = 8.3
 Identities = 17/44 (38%), Positives = 22/44 (50%), Gaps = 3/44 (6%)
 Frame = +2

Query: 173  SPCSGHAAPSPPTQPRAASPG---ASRRLRPVGGRVAATAPPRL 295
            SP      PS    PR ++P    AS  ++PV   +A TAPP L
Sbjct: 1579 SPTKSPKIPSSKKAPRTSAPKEFPASPSIKPVTTSLAQTAPPSL 1622

>CREA_BOTCI (O94130) DNA-binding protein creA (Carbon catabolite repressor)|
          Length = 435

 Score = 28.9 bits (63), Expect = 8.3
 Identities = 16/39 (41%), Positives = 20/39 (51%), Gaps = 1/39 (2%)
 Frame = +2

Query: 152 PLAVQRRSPCSGHAAPSP-PTQPRAASPGASRRLRPVGG 265
           P++    SP   H + SP P     A+P  S RLRP GG
Sbjct: 291 PMSTAPSSPTFSHDSLSPTPDHTPLATPAHSPRLRPFGG 329


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 48,958,480
Number of Sequences: 219361
Number of extensions: 708928
Number of successful extensions: 3519
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 3125
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3504
length of database: 80,573,946
effective HSP length: 104
effective length of database: 57,760,402
effective search space used: 3696665728
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)