Clone Name | bastl32a06 |
---|---|
Clone Library Name | barley_pub |
>ref|NM_185137.1| Oryza sativa (japonica cultivar-group), mRNA Length = 2834 Score = 260 bits (131), Expect = 4e-66 Identities = 188/207 (90%) Strand = Plus / Plus Query: 262 aacaagttccgccagcgcgaggccagcgacgacatgctcggctacccccaccttgatgaa 321 ||||||||||| ||||||||||||| |||||||||||| || |||||||||||||||||| Sbjct: 85 aacaagttccggcagcgcgaggccaccgacgacatgcttggatacccccaccttgatgaa 144 Query: 322 gatgcattgttgagtaccaagtgtccaaaacacgtggagctgagatggcagaccgaagtt 381 ||||| || |||| ||||||||||||||||| || ||||||||||||||||| |||||| Sbjct: 145 gatgctttattgaagaccaagtgtccaaaacatgtagagctgagatggcagactgaagtt 204 Query: 382 agttccagcatttatgcgagtccactgattgctgatatcaacagtgatggaaagctggaa 441 ||||||||||||||||| | ||| |||| |||||||||||||| ||||||||| ||||| Sbjct: 205 agttccagcatttatgcaactccgttgatcgctgatatcaacagcgatggaaagttggaa 264 Query: 442 gtagtggtgccatcatttgtccattac 468 |||||||||||||||||||| |||||| Sbjct: 265 gtagtggtgccatcatttgttcattac 291
>dbj|AK067902.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013121O19, full insert sequence Length = 3031 Score = 260 bits (131), Expect = 4e-66 Identities = 188/207 (90%) Strand = Plus / Plus Query: 262 aacaagttccgccagcgcgaggccagcgacgacatgctcggctacccccaccttgatgaa 321 ||||||||||| ||||||||||||| |||||||||||| || |||||||||||||||||| Sbjct: 234 aacaagttccggcagcgcgaggccaccgacgacatgcttggatacccccaccttgatgaa 293 Query: 322 gatgcattgttgagtaccaagtgtccaaaacacgtggagctgagatggcagaccgaagtt 381 ||||| || |||| ||||||||||||||||| || ||||||||||||||||| |||||| Sbjct: 294 gatgctttattgaagaccaagtgtccaaaacatgtagagctgagatggcagactgaagtt 353 Query: 382 agttccagcatttatgcgagtccactgattgctgatatcaacagtgatggaaagctggaa 441 ||||||||||||||||| | ||| |||| |||||||||||||| ||||||||| ||||| Sbjct: 354 agttccagcatttatgcaactccgttgatcgctgatatcaacagcgatggaaagttggaa 413 Query: 442 gtagtggtgccatcatttgtccattac 468 |||||||||||||||||||| |||||| Sbjct: 414 gtagtggtgccatcatttgttcattac 440 Score = 44.1 bits (22), Expect = 0.40 Identities = 25/26 (96%) Strand = Plus / Plus Query: 175 cagatgcgtcccctcctcgccctcgc 200 ||||||||||||||||||||| |||| Sbjct: 147 cagatgcgtcccctcctcgccttcgc 172
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 Length = 36102668 Score = 125 bits (63), Expect = 1e-25 Identities = 99/111 (89%) Strand = Plus / Plus Query: 315 tgatgaagatgcattgttgagtaccaagtgtccaaaacacgtggagctgagatggcagac 374 |||||||||||| || |||| ||||||||||||||||| || ||||||||||||||||| Sbjct: 34378006 tgatgaagatgctttattgaagaccaagtgtccaaaacatgtagagctgagatggcagac 34378065 Query: 375 cgaagttagttccagcatttatgcgagtccactgattgctgatatcaacag 425 ||||||||||||||||||||||| | ||| |||| |||||||||||||| Sbjct: 34378066 tgaagttagttccagcatttatgcaactccgttgatcgctgatatcaacag 34378116 Score = 73.8 bits (37), Expect = 5e-10 Identities = 49/53 (92%) Strand = Plus / Plus Query: 262 aacaagttccgccagcgcgaggccagcgacgacatgctcggctacccccacct 314 ||||||||||| ||||||||||||| |||||||||||| || ||||||||||| Sbjct: 34376355 aacaagttccggcagcgcgaggccaccgacgacatgcttggatacccccacct 34376407 Score = 67.9 bits (34), Expect = 3e-08 Identities = 40/42 (95%) Strand = Plus / Plus Query: 427 gatggaaagctggaagtagtggtgccatcatttgtccattac 468 ||||||||| ||||||||||||||||||||||||| |||||| Sbjct: 34378526 gatggaaagttggaagtagtggtgccatcatttgttcattac 34378567 Score = 44.1 bits (22), Expect = 0.40 Identities = 25/26 (96%) Strand = Plus / Plus Query: 175 cagatgcgtcccctcctcgccctcgc 200 ||||||||||||||||||||| |||| Sbjct: 34376268 cagatgcgtcccctcctcgccttcgc 34376293 Score = 40.1 bits (20), Expect = 6.3 Identities = 26/28 (92%) Strand = Plus / Minus Query: 217 gcggcgggcgcggccgccgcgggggagg 244 |||||||||| |||||||||||||||| Sbjct: 34655373 gcggcgggcggtgccgccgcgggggagg 34655346 Score = 40.1 bits (20), Expect = 6.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 79 gctcgcccgctcgcccgccg 98 |||||||||||||||||||| Sbjct: 7035407 gctcgcccgctcgcccgccg 7035426
>gb|AC091247.4| Oryza sativa chromosome 3 BAC OJ1111_B11 genomic sequence, complete sequence Length = 115393 Score = 125 bits (63), Expect = 1e-25 Identities = 99/111 (89%) Strand = Plus / Minus Query: 315 tgatgaagatgcattgttgagtaccaagtgtccaaaacacgtggagctgagatggcagac 374 |||||||||||| || |||| ||||||||||||||||| || ||||||||||||||||| Sbjct: 71688 tgatgaagatgctttattgaagaccaagtgtccaaaacatgtagagctgagatggcagac 71629 Query: 375 cgaagttagttccagcatttatgcgagtccactgattgctgatatcaacag 425 ||||||||||||||||||||||| | ||| |||| |||||||||||||| Sbjct: 71628 tgaagttagttccagcatttatgcaactccgttgatcgctgatatcaacag 71578 Score = 73.8 bits (37), Expect = 5e-10 Identities = 49/53 (92%) Strand = Plus / Minus Query: 262 aacaagttccgccagcgcgaggccagcgacgacatgctcggctacccccacct 314 ||||||||||| ||||||||||||| |||||||||||| || ||||||||||| Sbjct: 73339 aacaagttccggcagcgcgaggccaccgacgacatgcttggatacccccacct 73287 Score = 67.9 bits (34), Expect = 3e-08 Identities = 40/42 (95%) Strand = Plus / Minus Query: 427 gatggaaagctggaagtagtggtgccatcatttgtccattac 468 ||||||||| ||||||||||||||||||||||||| |||||| Sbjct: 71168 gatggaaagttggaagtagtggtgccatcatttgttcattac 71127 Score = 44.1 bits (22), Expect = 0.40 Identities = 25/26 (96%) Strand = Plus / Minus Query: 175 cagatgcgtcccctcctcgccctcgc 200 ||||||||||||||||||||| |||| Sbjct: 73426 cagatgcgtcccctcctcgccttcgc 73401
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete sequence Length = 36192742 Score = 125 bits (63), Expect = 1e-25 Identities = 99/111 (89%) Strand = Plus / Plus Query: 315 tgatgaagatgcattgttgagtaccaagtgtccaaaacacgtggagctgagatggcagac 374 |||||||||||| || |||| ||||||||||||||||| || ||||||||||||||||| Sbjct: 34468478 tgatgaagatgctttattgaagaccaagtgtccaaaacatgtagagctgagatggcagac 34468537 Query: 375 cgaagttagttccagcatttatgcgagtccactgattgctgatatcaacag 425 ||||||||||||||||||||||| | ||| |||| |||||||||||||| Sbjct: 34468538 tgaagttagttccagcatttatgcaactccgttgatcgctgatatcaacag 34468588 Score = 73.8 bits (37), Expect = 5e-10 Identities = 49/53 (92%) Strand = Plus / Plus Query: 262 aacaagttccgccagcgcgaggccagcgacgacatgctcggctacccccacct 314 ||||||||||| ||||||||||||| |||||||||||| || ||||||||||| Sbjct: 34466827 aacaagttccggcagcgcgaggccaccgacgacatgcttggatacccccacct 34466879 Score = 67.9 bits (34), Expect = 3e-08 Identities = 40/42 (95%) Strand = Plus / Plus Query: 427 gatggaaagctggaagtagtggtgccatcatttgtccattac 468 ||||||||| ||||||||||||||||||||||||| |||||| Sbjct: 34468998 gatggaaagttggaagtagtggtgccatcatttgttcattac 34469039 Score = 44.1 bits (22), Expect = 0.40 Identities = 25/26 (96%) Strand = Plus / Plus Query: 175 cagatgcgtcccctcctcgccctcgc 200 ||||||||||||||||||||| |||| Sbjct: 34466740 cagatgcgtcccctcctcgccttcgc 34466765 Score = 40.1 bits (20), Expect = 6.3 Identities = 26/28 (92%) Strand = Plus / Minus Query: 217 gcggcgggcgcggccgccgcgggggagg 244 |||||||||| |||||||||||||||| Sbjct: 34745445 gcggcgggcggtgccgccgcgggggagg 34745418 Score = 40.1 bits (20), Expect = 6.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 79 gctcgcccgctcgcccgccg 98 |||||||||||||||||||| Sbjct: 7033302 gctcgcccgctcgcccgccg 7033321
>ref|NM_111744.3| Arabidopsis thaliana DEX1 (DEFECTIVE IN EXINE FORMATION 1) AT3G09090 (DEX1) mRNA, complete cds Length = 3722 Score = 65.9 bits (33), Expect = 1e-07 Identities = 111/137 (81%) Strand = Plus / Plus Query: 301 ggctacccccaccttgatgaagatgcattgttgagtaccaagtgtccaaaacacgtggag 360 ||||||||| | ||||||||||||| || |||| ||| |||| || ||| | ||||| Sbjct: 367 ggctaccccgatattgatgaagatgctttattgaatactcagtgcccgaaaaaattggag 426 Query: 361 ctgagatggcagaccgaagttagttccagcatttatgcgagtccactgattgctgatatc 420 ||| ||||||| || ||||| | ||| ||| ||||||| | || ||||||||||||| Sbjct: 427 ctgcgatggcaaactgaagtcacttctagcgtttatgctacacccttgattgctgatatt 486 Query: 421 aacagtgatggaaagct 437 ||||||||||||||||| Sbjct: 487 aacagtgatggaaagct 503
>gb|AF257187.1|AF257187 Arabidopsis thaliana defective in exine formation (DEX1) mRNA, complete cds Length = 3112 Score = 65.9 bits (33), Expect = 1e-07 Identities = 111/137 (81%) Strand = Plus / Plus Query: 301 ggctacccccaccttgatgaagatgcattgttgagtaccaagtgtccaaaacacgtggag 360 ||||||||| | ||||||||||||| || |||| ||| |||| || ||| | ||||| Sbjct: 367 ggctaccccgatattgatgaagatgctttattgaatactcagtgcccgaaaaaattggag 426 Query: 361 ctgagatggcagaccgaagttagttccagcatttatgcgagtccactgattgctgatatc 420 ||| ||||||| || ||||| | ||| ||| ||||||| | || ||||||||||||| Sbjct: 427 ctgcgatggcaaactgaagtcacttctagcgtttatgctacacccttgattgctgatatt 486 Query: 421 aacagtgatggaaagct 437 ||||||||||||||||| Sbjct: 487 aacagtgatggaaagct 503
>gb|BT005785.1| Arabidopsis thaliana clone RAFL15-34-O06 (R50099) unknown protein (At3g09090) mRNA, partial cds Length = 2893 Score = 65.9 bits (33), Expect = 1e-07 Identities = 111/137 (81%) Strand = Plus / Plus Query: 301 ggctacccccaccttgatgaagatgcattgttgagtaccaagtgtccaaaacacgtggag 360 ||||||||| | ||||||||||||| || |||| ||| |||| || ||| | ||||| Sbjct: 102 ggctaccccgatattgatgaagatgctttattgaatactcagtgcccgaaaaaattggag 161 Query: 361 ctgagatggcagaccgaagttagttccagcatttatgcgagtccactgattgctgatatc 420 ||| ||||||| || ||||| | ||| ||| ||||||| | || ||||||||||||| Sbjct: 162 ctgcgatggcaaactgaagtcacttctagcgtttatgctacacccttgattgctgatatt 221 Query: 421 aacagtgatggaaagct 437 ||||||||||||||||| Sbjct: 222 aacagtgatggaaagct 238
>emb|BX824633.1|CNS0A7UY Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTPGH61ZA03 of Hormone Treated Callus of strain col-0 of Arabidopsis thaliana (thale cress) Length = 2946 Score = 60.0 bits (30), Expect = 7e-06 Identities = 69/82 (84%) Strand = Plus / Plus Query: 356 tggagctgagatggcagaccgaagttagttccagcatttatgcgagtccactgattgctg 415 |||||||| ||||||| || ||||| | ||| ||| ||||||| | || ||||||||| Sbjct: 296 tggagctgcgatggcaaactgaagtcacttctagcgtttatgctacacccttgattgctg 355 Query: 416 atatcaacagtgatggaaagct 437 |||| ||||||||||||||||| Sbjct: 356 atattaacagtgatggaaagct 377
>ref|XM_474423.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 1650 Score = 48.1 bits (24), Expect = 0.026 Identities = 27/28 (96%) Strand = Plus / Minus Query: 211 cttctcgcggcgggcgcggccgccgcgg 238 |||||||||||||| ||||||||||||| Sbjct: 937 cttctcgcggcgggagcggccgccgcgg 910
>emb|AL606686.3|OSJN00084 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0070M12, complete sequence Length = 144670 Score = 48.1 bits (24), Expect = 0.026 Identities = 27/28 (96%) Strand = Plus / Plus Query: 211 cttctcgcggcgggcgcggccgccgcgg 238 |||||||||||||| ||||||||||||| Sbjct: 3833 cttctcgcggcgggagcggccgccgcgg 3860
>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete sequence Length = 35498469 Score = 48.1 bits (24), Expect = 0.026 Identities = 27/28 (96%) Strand = Plus / Plus Query: 211 cttctcgcggcgggcgcggccgccgcgg 238 |||||||||||||| ||||||||||||| Sbjct: 35067330 cttctcgcggcgggagcggccgccgcgg 35067357
>emb|AL732347.3| Oryza sativa genomic DNA, chromosome 4, BAC clone: H0723C07, complete sequence Length = 112897 Score = 48.1 bits (24), Expect = 0.026 Identities = 27/28 (96%) Strand = Plus / Plus Query: 211 cttctcgcggcgggcgcggccgccgcgg 238 |||||||||||||| ||||||||||||| Sbjct: 22063 cttctcgcggcgggagcggccgccgcgg 22090
>gb|CP000086.1| Burkholderia thailandensis E264 chromosome I, complete sequence Length = 3809201 Score = 48.1 bits (24), Expect = 0.026 Identities = 24/24 (100%) Strand = Plus / Plus Query: 216 cgcggcgggcgcggccgccgcggg 239 |||||||||||||||||||||||| Sbjct: 2462257 cgcggcgggcgcggccgccgcggg 2462280 Score = 44.1 bits (22), Expect = 0.40 Identities = 22/22 (100%) Strand = Plus / Minus Query: 215 tcgcggcgggcgcggccgccgc 236 |||||||||||||||||||||| Sbjct: 419868 tcgcggcgggcgcggccgccgc 419847 Score = 44.1 bits (22), Expect = 0.40 Identities = 22/22 (100%) Strand = Plus / Plus Query: 216 cgcggcgggcgcggccgccgcg 237 |||||||||||||||||||||| Sbjct: 406425 cgcggcgggcgcggccgccgcg 406446 Score = 40.1 bits (20), Expect = 6.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 217 gcggcgggcgcggccgccgc 236 |||||||||||||||||||| Sbjct: 2501000 gcggcgggcgcggccgccgc 2500981
>emb|AL606651.3|OSJN00092 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0088H09, complete sequence Length = 145391 Score = 48.1 bits (24), Expect = 0.026 Identities = 27/28 (96%) Strand = Plus / Plus Query: 211 cttctcgcggcgggcgcggccgccgcgg 238 |||||||||||||| ||||||||||||| Sbjct: 126377 cttctcgcggcgggagcggccgccgcgg 126404
>emb|BX640441.1| Bordetella bronchiseptica strain RB50, complete genome; segment 5/16 Length = 348624 Score = 46.1 bits (23), Expect = 0.10 Identities = 23/23 (100%) Strand = Plus / Minus Query: 216 cgcggcgggcgcggccgccgcgg 238 ||||||||||||||||||||||| Sbjct: 283955 cgcggcgggcgcggccgccgcgg 283933
>emb|BX640429.1| Bordetella parapertussis strain 12822, complete genome; segment 7/14 Length = 344321 Score = 46.1 bits (23), Expect = 0.10 Identities = 23/23 (100%) Strand = Plus / Minus Query: 216 cgcggcgggcgcggccgccgcgg 238 ||||||||||||||||||||||| Sbjct: 229443 cgcggcgggcgcggccgccgcgg 229421
>gb|CP000157.1| Erythrobacter litoralis HTCC2594, complete genome Length = 3052398 Score = 46.1 bits (23), Expect = 0.10 Identities = 23/23 (100%) Strand = Plus / Minus Query: 266 agttccgccagcgcgaggccagc 288 ||||||||||||||||||||||| Sbjct: 398860 agttccgccagcgcgaggccagc 398838
>gb|U50602.1|HSU50602 Human Promoter Capture subclone s3-1 Length = 367 Score = 44.1 bits (22), Expect = 0.40 Identities = 22/22 (100%) Strand = Plus / Plus Query: 217 gcggcgggcgcggccgccgcgg 238 |||||||||||||||||||||| Sbjct: 275 gcggcgggcgcggccgccgcgg 296
>gb|U29488.2| Caenorhabditis elegans cosmid C56C10, complete sequence Length = 35166 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Minus Query: 345 tccaaaacacgtggagctgag 365 ||||||||||||||||||||| Sbjct: 20715 tccaaaacacgtggagctgag 20695
>gb|AC167718.4| Culex pipiens quinquefasciatus, clone Culex pipiens quinquefasciatus-3940130D9, complete sequence Length = 117683 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Minus Query: 218 cggcgggcgcggccgccgcgg 238 ||||||||||||||||||||| Sbjct: 63318 cggcgggcgcggccgccgcgg 63298
>ref|NM_193639.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 2070 Score = 42.1 bits (21), Expect = 1.6 Identities = 27/29 (93%) Strand = Plus / Plus Query: 216 cgcggcgggcgcggccgccgcgggggagg 244 ||||||||||||||| | ||||||||||| Sbjct: 69 cgcggcgggcgcggcgggcgcgggggagg 97
>gb|CP000125.1| Burkholderia pseudomallei 1710b chromosome II, complete sequence Length = 3181762 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Plus Query: 217 gcggcgggcgcggccgccgcg 237 ||||||||||||||||||||| Sbjct: 2455167 gcggcgggcgcggccgccgcg 2455187 Score = 40.1 bits (20), Expect = 6.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 221 cgggcgcggccgccgcgggg 240 |||||||||||||||||||| Sbjct: 2737913 cgggcgcggccgccgcgggg 2737932
>gb|CP000270.1| Burkholderia xenovorans LB400 chromosome 1, complete sequence Length = 4895836 Score = 42.1 bits (21), Expect = 1.6 Identities = 24/25 (96%) Strand = Plus / Plus Query: 215 tcgcggcgggcgcggccgccgcggg 239 |||||||||| |||||||||||||| Sbjct: 679150 tcgcggcgggtgcggccgccgcggg 679174
>gb|AC167662.6| Culex pipiens quinquefasciatus, clone Culex pipiens quinquefasciatus-3940141D9, complete sequence Length = 117679 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Plus Query: 218 cggcgggcgcggccgccgcgg 238 ||||||||||||||||||||| Sbjct: 54363 cggcgggcgcggccgccgcgg 54383
>emb|BX571966.1| Burkholderia pseudomallei strain K96243, chromosome 2, complete sequence Length = 3173005 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Plus Query: 217 gcggcgggcgcggccgccgcg 237 ||||||||||||||||||||| Sbjct: 635148 gcggcgggcgcggccgccgcg 635168 Score = 40.1 bits (20), Expect = 6.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 221 cgggcgcggccgccgcgggg 240 |||||||||||||||||||| Sbjct: 918403 cgggcgcggccgccgcgggg 918422
>ref|NM_062939.2| Caenorhabditis elegans DNaJ domain (prokaryotic heat shock protein) family member (dnj-8) (dnj-8) mRNA, complete cds Length = 2750 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Plus Query: 345 tccaaaacacgtggagctgag 365 ||||||||||||||||||||| Sbjct: 2190 tccaaaacacgtggagctgag 2210
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete sequence Length = 43261740 Score = 42.1 bits (21), Expect = 1.6 Identities = 27/29 (93%) Strand = Plus / Minus Query: 216 cgcggcgggcgcggccgccgcgggggagg 244 ||||||||||||||| | ||||||||||| Sbjct: 22337520 cgcggcgggcgcggcgggcgcgggggagg 22337492
>gb|CP000251.1| Anaeromyxobacter dehalogenans 2CP-C, complete genome Length = 5013479 Score = 42.1 bits (21), Expect = 1.6 Identities = 24/25 (96%) Strand = Plus / Plus Query: 82 cgcccgctcgcccgccgggccgaga 106 |||||||||||||| |||||||||| Sbjct: 4739168 cgcccgctcgcccggcgggccgaga 4739192 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Minus Query: 224 gcgcggccgccgcgggggagg 244 ||||||||||||||||||||| Sbjct: 4339446 gcgcggccgccgcgggggagg 4339426 Score = 42.1 bits (21), Expect = 1.6 Identities = 24/25 (96%) Strand = Plus / Plus Query: 220 gcgggcgcggccgccgcgggggagg 244 |||||||||| |||||||||||||| Sbjct: 605673 gcgggcgcgggcgccgcgggggagg 605697 Score = 40.1 bits (20), Expect = 6.3 Identities = 23/24 (95%) Strand = Plus / Plus Query: 216 cgcggcgggcgcggccgccgcggg 239 |||||||||||||| ||||||||| Sbjct: 2086931 cgcggcgggcgcgggcgccgcggg 2086954 Score = 40.1 bits (20), Expect = 6.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 82 cgcccgctcgcccgccgggc 101 |||||||||||||||||||| Sbjct: 1661056 cgcccgctcgcccgccgggc 1661075
>dbj|AP008226.1| Thermus thermophilus HB8 genomic DNA, complete genome Length = 1849742 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Minus Query: 184 cccctcctcgccctcgccgtg 204 ||||||||||||||||||||| Sbjct: 987395 cccctcctcgccctcgccgtg 987375 Score = 40.1 bits (20), Expect = 6.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 86 cgctcgcccgccgggccgag 105 |||||||||||||||||||| Sbjct: 630334 cgctcgcccgccgggccgag 630353
>dbj|AP002908.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0013G02 Length = 163419 Score = 42.1 bits (21), Expect = 1.6 Identities = 27/29 (93%) Strand = Plus / Minus Query: 216 cgcggcgggcgcggccgccgcgggggagg 244 ||||||||||||||| | ||||||||||| Sbjct: 34790 cgcggcgggcgcggcgggcgcgggggagg 34762
>dbj|AP003310.5| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0022F12 Length = 137716 Score = 42.1 bits (21), Expect = 1.6 Identities = 27/29 (93%) Strand = Plus / Minus Query: 216 cgcggcgggcgcggccgccgcgggggagg 244 ||||||||||||||| | ||||||||||| Sbjct: 119999 cgcggcgggcgcggcgggcgcgggggagg 119971
>gb|AC152987.1| Mus musculus 6 BAC RP23-133N21 (Roswell Park Cancer Institute (C57BL/6J Female) Mouse BAC Library) complete sequence Length = 196532 Score = 40.1 bits (20), Expect = 6.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 79 gctcgcccgctcgcccgccg 98 |||||||||||||||||||| Sbjct: 68967 gctcgcccgctcgcccgccg 68986
>ref|XM_470162.1| Oryza sativa (japonica cultivar-group), mRNA Length = 608 Score = 40.1 bits (20), Expect = 6.3 Identities = 26/28 (92%) Strand = Plus / Plus Query: 217 gcggcgggcgcggccgccgcgggggagg 244 |||||||||| |||||||||||||||| Sbjct: 52 gcggcgggcggtgccgccgcgggggagg 79
>ref|XM_477322.1| Oryza sativa (japonica cultivar-group), mRNA Length = 816 Score = 40.1 bits (20), Expect = 6.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 79 gctcgcccgctcgcccgccg 98 |||||||||||||||||||| Sbjct: 370 gctcgcccgctcgcccgccg 351
>gb|CP000010.1| Burkholderia mallei ATCC 23344 chromosome 1, complete sequence Length = 3510148 Score = 40.1 bits (20), Expect = 6.3 Identities = 23/24 (95%) Strand = Plus / Minus Query: 216 cgcggcgggcgcggccgccgcggg 239 ||||||||||||||| |||||||| Sbjct: 1454671 cgcggcgggcgcggctgccgcggg 1454648
>gb|AE016822.1| Leifsonia xyli subsp. xyli str. CTCB07, complete genome Length = 2584158 Score = 40.1 bits (20), Expect = 6.3 Identities = 26/28 (92%) Strand = Plus / Plus Query: 214 ctcgcggcgggcgcggccgccgcggggg 241 |||||||||||||| |||||||||||| Sbjct: 1085555 ctcgcggcgggcgcttccgccgcggggg 1085582
>gb|BC055100.1| Mus musculus WD repeat and SOCS box-containing 2, mRNA (cDNA clone MGC:58219 IMAGE:6589250), complete cds Length = 2439 Score = 40.1 bits (20), Expect = 6.3 Identities = 23/24 (95%) Strand = Plus / Plus Query: 217 gcggcgggcgcggccgccgcgggg 240 ||||||||||||||||| |||||| Sbjct: 62 gcggcgggcgcggccgcggcgggg 85
>gb|CP000124.1| Burkholderia pseudomallei 1710b chromosome I, complete sequence Length = 4126292 Score = 40.1 bits (20), Expect = 6.3 Identities = 23/24 (95%) Strand = Plus / Minus Query: 216 cgcggcgggcgcggccgccgcggg 239 ||||||||||||||| |||||||| Sbjct: 2680819 cgcggcgggcgcggctgccgcggg 2680796
>ref|NM_021539.3| Mus musculus WD repeat and SOCS box-containing 2 (Wsb2), mRNA Length = 2439 Score = 40.1 bits (20), Expect = 6.3 Identities = 23/24 (95%) Strand = Plus / Plus Query: 217 gcggcgggcgcggccgccgcgggg 240 ||||||||||||||||| |||||| Sbjct: 62 gcggcgggcgcggccgcggcgggg 85
>ref|XM_980776.1| PREDICTED: Mus musculus hypothetical protein LOC665995 (LOC665995), mRNA Length = 545 Score = 40.1 bits (20), Expect = 6.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 79 gctcgcccgctcgcccgccg 98 |||||||||||||||||||| Sbjct: 351 gctcgcccgctcgcccgccg 332
>gb|AC110234.11| Mus musculus chromosome 5, clone RP23-76J15, complete sequence Length = 235276 Score = 40.1 bits (20), Expect = 6.3 Identities = 23/24 (95%) Strand = Plus / Minus Query: 217 gcggcgggcgcggccgccgcgggg 240 ||||||||||||||||| |||||| Sbjct: 16948 gcggcgggcgcggccgcggcgggg 16925
>emb|Z35639.1|CED2045 Caenorhabditis elegans Cosmid D2045, complete sequence Length = 37249 Score = 40.1 bits (20), Expect = 6.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 28 tcctccgagtccgtcctcct 47 |||||||||||||||||||| Sbjct: 11272 tcctccgagtccgtcctcct 11253
>gb|AC113299.14| Mus musculus chromosome 5, clone RP23-429P17, complete sequence Length = 214124 Score = 40.1 bits (20), Expect = 6.3 Identities = 23/24 (95%) Strand = Plus / Plus Query: 217 gcggcgggcgcggccgccgcgggg 240 ||||||||||||||||| |||||| Sbjct: 17693 gcggcgggcgcggccgcggcgggg 17716
>gb|AC133339.3| Oryza sativa chromosome 3 BAC OSJNBa0078D06 genomic sequence, complete sequence Length = 164236 Score = 40.1 bits (20), Expect = 6.3 Identities = 26/28 (92%) Strand = Plus / Minus Query: 217 gcggcgggcgcggccgccgcgggggagg 244 |||||||||| |||||||||||||||| Sbjct: 113090 gcggcgggcggtgccgccgcgggggagg 113063
>emb|BX883045.1| Rattus norvegicus chromosome 20, major histocompatibility complex, assembled from 40 BACs, strain Brown Norway (BN/ssNHsd), RT1n haplotype; segment 4/11 Length = 346406 Score = 40.1 bits (20), Expect = 6.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 152 ggacccctaggctcctctgg 171 |||||||||||||||||||| Sbjct: 115940 ggacccctaggctcctctgg 115921
>emb|BX640438.1| Bordetella bronchiseptica strain RB50, complete genome; segment 2/16 Length = 347786 Score = 40.1 bits (20), Expect = 6.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 216 cgcggcgggcgcggccgccg 235 |||||||||||||||||||| Sbjct: 214349 cgcggcgggcgcggccgccg 214368
>emb|BX640424.1| Bordetella parapertussis strain 12822, complete genome; segment 2/14 Length = 349146 Score = 40.1 bits (20), Expect = 6.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 216 cgcggcgggcgcggccgccg 235 |||||||||||||||||||| Sbjct: 212556 cgcggcgggcgcggccgccg 212575
>emb|BX640413.1| Bordetella pertussis strain Tohama I, complete genome; segment 3/12 Length = 349028 Score = 40.1 bits (20), Expect = 6.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 216 cgcggcgggcgcggccgccg 235 |||||||||||||||||||| Sbjct: 227083 cgcggcgggcgcggccgccg 227064
>emb|BX571965.1| Burkholderia pseudomallei strain K96243, chromosome 1, complete sequence Length = 4074542 Score = 40.1 bits (20), Expect = 6.3 Identities = 23/24 (95%) Strand = Plus / Plus Query: 216 cgcggcgggcgcggccgccgcggg 239 ||||||||||||||| |||||||| Sbjct: 1702652 cgcggcgggcgcggctgccgcggg 1702675
>emb|AJ421477.1|MDI421477 Methylobacterium dichloromethanicum mtdB gene, mchA gene, fae gene for Hypothetical protein, fae gene and ORF1-5, strain DM4 (DSM6343) Length = 7038 Score = 40.1 bits (20), Expect = 6.3 Identities = 23/24 (95%) Strand = Plus / Minus Query: 120 tcgccgccgcctcgtcgcgaccgc 143 ||||||||||||||||||| |||| Sbjct: 1592 tcgccgccgcctcgtcgcggccgc 1569
>gb|AC092733.18| Homo sapiens chromosome 11, clone RP11-193F22, complete sequence Length = 195538 Score = 40.1 bits (20), Expect = 6.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 182 gtcccctcctcgccctcgcc 201 |||||||||||||||||||| Sbjct: 152085 gtcccctcctcgccctcgcc 152066
>gb|AE005983.1| Caulobacter crescentus CB15 section 309 of 359 of the complete genome Length = 13041 Score = 40.1 bits (20), Expect = 6.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 219 ggcgggcgcggccgccgcgg 238 |||||||||||||||||||| Sbjct: 12292 ggcgggcgcggccgccgcgg 12273
>gb|AC063949.21| Homo sapiens 12 BAC RP11-693J15 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 172984 Score = 40.1 bits (20), Expect = 6.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 318 tgaagatgcattgttgagta 337 |||||||||||||||||||| Sbjct: 65252 tgaagatgcattgttgagta 65271
>gb|AC103891.2| Oryza sativa (japonica cultivar-group) chromosome 3 clone OJ1175C11, complete sequence Length = 123620 Score = 40.1 bits (20), Expect = 6.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 79 gctcgcccgctcgcccgccg 98 |||||||||||||||||||| Sbjct: 46958 gctcgcccgctcgcccgccg 46939
>dbj|AK157999.1| Mus musculus adult inner ear cDNA, RIKEN full-length enriched library, clone:F930015G07 product:WD repeat and SOCS box-containing 2, full insert sequence Length = 1565 Score = 40.1 bits (20), Expect = 6.3 Identities = 23/24 (95%) Strand = Plus / Plus Query: 217 gcggcgggcgcggccgccgcgggg 240 ||||||||||||||||| |||||| Sbjct: 21 gcggcgggcgcggccgcggcgggg 44
>dbj|AK080976.1| Mus musculus 4 days neonate thymus cDNA, RIKEN full-length enriched library, clone:B630006D22 product:WSB-2 protein, full insert sequence Length = 3358 Score = 40.1 bits (20), Expect = 6.3 Identities = 23/24 (95%) Strand = Plus / Plus Query: 217 gcggcgggcgcggccgccgcgggg 240 ||||||||||||||||| |||||| Sbjct: 63 gcggcgggcgcggccgcggcgggg 86
>ref|NM_001026060.1| Caenorhabditis elegans human ATX (ataxin) related family member (atx-2) (atx-2) mRNA, complete cds Length = 3612 Score = 40.1 bits (20), Expect = 6.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 28 tcctccgagtccgtcctcct 47 |||||||||||||||||||| Sbjct: 490 tcctccgagtccgtcctcct 471
>ref|NM_001026059.1| Caenorhabditis elegans human ATX (ataxin) related family member (atx-2) (atx-2) mRNA, complete cds Length = 3612 Score = 40.1 bits (20), Expect = 6.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 28 tcctccgagtccgtcctcct 47 |||||||||||||||||||| Sbjct: 490 tcctccgagtccgtcctcct 471
>gb|CP000011.2| Burkholderia mallei ATCC 23344 chromosome 2, complete sequence Length = 2325379 Score = 40.1 bits (20), Expect = 6.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 221 cgggcgcggccgccgcgggg 240 |||||||||||||||||||| Sbjct: 1210871 cgggcgcggccgccgcgggg 1210852
>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, complete sequence Length = 28434780 Score = 40.1 bits (20), Expect = 6.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 184 cccctcctcgccctcgccgt 203 |||||||||||||||||||| Sbjct: 23078799 cccctcctcgccctcgccgt 23078818
>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete sequence Length = 29644043 Score = 40.1 bits (20), Expect = 6.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 79 gctcgcccgctcgcccgccg 98 |||||||||||||||||||| Sbjct: 9443786 gctcgcccgctcgcccgccg 9443767
>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete sequence Length = 35954743 Score = 40.1 bits (20), Expect = 6.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 77 cggctcgcccgctcgcccgc 96 |||||||||||||||||||| Sbjct: 29774461 cggctcgcccgctcgcccgc 29774442
>gb|AC158165.1| Mus musculus BAC clone RP23-462M21 from chromosome 6, complete sequence Length = 179032 Score = 40.1 bits (20), Expect = 6.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 378 agttagttccagcatttatg 397 |||||||||||||||||||| Sbjct: 107958 agttagttccagcatttatg 107939
>gb|AY211023.1| Streptomyces violaceoruber strain SANK95570 plasmid pSV2, complete sequence Length = 96742 Score = 40.1 bits (20), Expect = 6.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 214 ctcgcggcgggcgcggccgc 233 |||||||||||||||||||| Sbjct: 50914 ctcgcggcgggcgcggccgc 50933
>emb|BX933173.1| Gallus gallus finished cDNA, clone ChEST848h23 Length = 1124 Score = 40.1 bits (20), Expect = 6.3 Identities = 23/24 (95%) Strand = Plus / Plus Query: 75 cccggctcgcccgctcgcccgccg 98 |||||||||||||| ||||||||| Sbjct: 5 cccggctcgcccgcccgcccgccg 28
>dbj|AP006267.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC clone:OSJNBa0004F07 Length = 135890 Score = 40.1 bits (20), Expect = 6.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 79 gctcgcccgctcgcccgccg 98 |||||||||||||||||||| Sbjct: 114654 gctcgcccgctcgcccgccg 114635
>dbj|AP004693.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, PAC clone:P0461F06 Length = 147891 Score = 40.1 bits (20), Expect = 6.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 184 cccctcctcgccctcgccgt 203 |||||||||||||||||||| Sbjct: 1898 cccctcctcgccctcgccgt 1917
>dbj|AP004098.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC clone:OJ2056_H01 Length = 123428 Score = 40.1 bits (20), Expect = 6.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 77 cggctcgcccgctcgcccgc 96 |||||||||||||||||||| Sbjct: 30806 cggctcgcccgctcgcccgc 30787
>dbj|AP004047.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC clone:OJ1191_G08 Length = 172832 Score = 40.1 bits (20), Expect = 6.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 77 cggctcgcccgctcgcccgc 96 |||||||||||||||||||| Sbjct: 143440 cggctcgcccgctcgcccgc 143421
>dbj|AP006447.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC clone:B1100H02 Length = 128773 Score = 40.1 bits (20), Expect = 6.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 79 gctcgcccgctcgcccgccg 98 |||||||||||||||||||| Sbjct: 25772 gctcgcccgctcgcccgccg 25753
>dbj|AP004585.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, PAC clone:P0470B03 Length = 163371 Score = 40.1 bits (20), Expect = 6.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 184 cccctcctcgccctcgccgt 203 |||||||||||||||||||| Sbjct: 138527 cccctcctcgccctcgccgt 138546
>dbj|AK101289.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033033G01, full insert sequence Length = 685 Score = 40.1 bits (20), Expect = 6.3 Identities = 26/28 (92%) Strand = Plus / Plus Query: 217 gcggcgggcgcggccgccgcgggggagg 244 |||||||||| |||||||||||||||| Sbjct: 129 gcggcgggcggtgccgccgcgggggagg 156
>gb|AY739305.1| Zea mays thiol oxidoreductase (TEL1) mRNA, complete cds Length = 2018 Score = 40.1 bits (20), Expect = 6.3 Identities = 23/24 (95%) Strand = Plus / Plus Query: 180 gcgtcccctcctcgccctcgccgt 203 ||||| |||||||||||||||||| Sbjct: 187 gcgtctcctcctcgccctcgccgt 210
>gb|AY571963.1| Caenorhabditis elegans ATX-2 (atx-2) mRNA, complete cds Length = 3634 Score = 40.1 bits (20), Expect = 6.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 28 tcctccgagtccgtcctcct 47 |||||||||||||||||||| Sbjct: 512 tcctccgagtccgtcctcct 493
>gb|CP000085.1| Burkholderia thailandensis E264 chromosome II, complete sequence Length = 2914771 Score = 40.1 bits (20), Expect = 6.3 Identities = 23/24 (95%) Strand = Plus / Plus Query: 216 cgcggcgggcgcggccgccgcggg 239 ||||||||||||||||| |||||| Sbjct: 2012419 cgcggcgggcgcggccggcgcggg 2012442
>gb|AE017221.1| Thermus thermophilus HB27, complete genome Length = 1894877 Score = 40.1 bits (20), Expect = 6.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 86 cgctcgcccgccgggccgag 105 |||||||||||||||||||| Sbjct: 292495 cgctcgcccgccgggccgag 292514 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 3,671,164 Number of Sequences: 3902068 Number of extensions: 3671164 Number of successful extensions: 96494 Number of sequences better than 10.0: 77 Number of HSP's better than 10.0 without gapping: 79 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 91764 Number of HSP's gapped (non-prelim): 4723 length of query: 468 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 446 effective length of database: 17,147,199,772 effective search space: 7647651098312 effective search space used: 7647651098312 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)