ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name bastl32a05
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1COAT_PLRVW (P11624) Coat protein 30 2.5
2COAT_PLRVR (P17521) Coat protein 30 2.5
3COAT_PLRV1 (P17522) Coat protein 30 2.5
4COAT_PLRV (P10470) Coat protein 30 2.5
5NTAL_HUMAN (Q9GZY6) Linker for activation of T-cells family memb... 29 7.2

>COAT_PLRVW (P11624) Coat protein|
          Length = 208

 Score = 30.4 bits (67), Expect = 2.5
 Identities = 15/23 (65%), Positives = 17/23 (73%)
 Frame = -1

Query: 478 RRRRRGGGWSAKRADLGVPRGRG 410
           RRRRRGG   ++R   GVPRGRG
Sbjct: 47  RRRRRGGNRRSRRT--GVPRGRG 67



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>COAT_PLRVR (P17521) Coat protein|
          Length = 208

 Score = 30.4 bits (67), Expect = 2.5
 Identities = 15/23 (65%), Positives = 17/23 (73%)
 Frame = -1

Query: 478 RRRRRGGGWSAKRADLGVPRGRG 410
           RRRRRGG   ++R   GVPRGRG
Sbjct: 47  RRRRRGGNRRSRRT--GVPRGRG 67



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>COAT_PLRV1 (P17522) Coat protein|
          Length = 208

 Score = 30.4 bits (67), Expect = 2.5
 Identities = 15/23 (65%), Positives = 17/23 (73%)
 Frame = -1

Query: 478 RRRRRGGGWSAKRADLGVPRGRG 410
           RRRRRGG   ++R   GVPRGRG
Sbjct: 47  RRRRRGGNRRSRRT--GVPRGRG 67



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>COAT_PLRV (P10470) Coat protein|
          Length = 208

 Score = 30.4 bits (67), Expect = 2.5
 Identities = 15/23 (65%), Positives = 17/23 (73%)
 Frame = -1

Query: 478 RRRRRGGGWSAKRADLGVPRGRG 410
           RRRRRGG   ++R   GVPRGRG
Sbjct: 47  RRRRRGGNRRSRRT--GVPRGRG 67



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>NTAL_HUMAN (Q9GZY6) Linker for activation of T-cells family member 2|
           (Non-T-cell activation linker) (Linker for activation of
           B-cells) (Membrane-associated adapter molecule)
           (Williams-Beuren syndrome critical region 15 protein)
          Length = 243

 Score = 28.9 bits (63), Expect = 7.2
 Identities = 17/43 (39%), Positives = 26/43 (60%), Gaps = 2/43 (4%)
 Frame = +2

Query: 155 LPEPAAAPYRTVS--SRHGADDAVGTVVSMLSGYAGRFSKDAE 277
           L +PA++ Y+  S  SRHG+++A    ++M     GRFSK  E
Sbjct: 87  LEDPASSRYQNFSKGSRHGSEEAYIDPIAMEYYNWGRFSKPPE 129


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 43,982,941
Number of Sequences: 219361
Number of extensions: 527638
Number of successful extensions: 2143
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 2062
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2136
length of database: 80,573,946
effective HSP length: 103
effective length of database: 57,979,763
effective search space used: 3188886965
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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