ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
menu 
| Clone Name | bastl32a04 |
|---|---|
| Clone Library Name | barley_pub |
>YNR7_SCHPO (Q9USZ2) Hypothetical protein C11G11.07 in chromosome II| Length = 955 Score = 62.4 bits (150), Expect = 6e-10 Identities = 31/85 (36%), Positives = 51/85 (60%) Frame = +2 Query: 209 TVKEALAALYHHPDDTIRTAADRWLQKFQHTLDAWQVADSLLHDESSNLETLMFCSQTLR 388 T+ ALA LY + D + A+ +L++FQ + AWQ+ S+L+ + S++E +F +QTLR Sbjct: 3 TLLSALATLYANTDREQKLQANNYLEEFQKSPAAWQICFSILNQDDSSIEAKLFAAQTLR 62 Query: 389 SKVXRDXEELPSEAFRPLQDSLYGL 463 K+ D +LP E ++SL L Sbjct: 63 QKIVYDFHQLPKETHIEFRNSLLQL 87
>TNPO3_HUMAN (Q9Y5L0) Transportin 3 (Transportin-SR) (TRN-SR) (Importin 12)| Length = 975 Score = 60.5 bits (145), Expect = 2e-09 Identities = 29/81 (35%), Positives = 50/81 (61%) Frame = +2 Query: 212 VKEALAALYHHPDDTIRTAADRWLQKFQHTLDAWQVADSLLHDESSNLETLMFCSQTLRS 391 V +A+ ALYH PD + + A WL + Q ++ AW+++D LL ++E+ F +QT++ Sbjct: 11 VYQAVQALYHDPDPSGKERASFWLGELQRSVHAWEISDQLLQIR-QDVESCYFAAQTMKM 69 Query: 392 KVXRDXEELPSEAFRPLQDSL 454 K+ ELP+++ L+DSL Sbjct: 70 KIQTSFYELPTDSHASLRDSL 90
>TNPO3_MOUSE (Q6P2B1) Transportin 3| Length = 923 Score = 60.5 bits (145), Expect = 2e-09 Identities = 29/81 (35%), Positives = 50/81 (61%) Frame = +2 Query: 212 VKEALAALYHHPDDTIRTAADRWLQKFQHTLDAWQVADSLLHDESSNLETLMFCSQTLRS 391 V +A+ ALYH PD + + A WL + Q ++ AW+++D LL ++E+ F +QT++ Sbjct: 11 VYQAVQALYHDPDPSGKERASFWLGELQRSVHAWEISDQLLQIR-QDVESCYFAAQTMKM 69 Query: 392 KVXRDXEELPSEAFRPLQDSL 454 K+ ELP+++ L+DSL Sbjct: 70 KIQTSFYELPTDSHASLRDSL 90
>IPO13_MOUSE (Q8K0C1) Importin-13 (Imp13)| Length = 963 Score = 39.7 bits (91), Expect = 0.004 Identities = 27/103 (26%), Positives = 48/103 (46%), Gaps = 4/103 (3%) Frame = +2 Query: 161 EEEVGFGADMEAQA----TATVKEALAALYHHPDDTIRTAADRWLQKFQHTLDAWQVADS 328 EE++G A A V++AL LY+ P+ + A +WL + Q + AW + Sbjct: 5 EEQLGAAGAGAAPALDFTVENVEKALHQLYYDPNIDNKNLAQKWLMQAQVSPQAWHFSWQ 64 Query: 329 LLHDESSNLETLMFCSQTLRSKVXRDXEELPSEAFRPLQDSLY 457 LL + E F + L K+ R ++P++ + L+ L+ Sbjct: 65 LLQPDKVP-EIQYFGASALHIKISRYWSDIPTDQYESLKAQLF 106
>IPO13_HUMAN (O94829) Importin-13 (Imp13) (Ran-binding protein 13) (RanBP13)| (Karyopherin 13) (Kap13) Length = 963 Score = 38.9 bits (89), Expect = 0.007 Identities = 22/82 (26%), Positives = 41/82 (50%) Frame = +2 Query: 212 VKEALAALYHHPDDTIRTAADRWLQKFQHTLDAWQVADSLLHDESSNLETLMFCSQTLRS 391 V++AL LY+ P+ + A +WL + Q + AW + LL + E F + L Sbjct: 26 VEKALHQLYYDPNIENKNLAQKWLMQAQVSPQAWHFSWQLLQPDKVP-EIQYFGASALHI 84 Query: 392 KVXRDXEELPSEAFRPLQDSLY 457 K+ R ++P++ + L+ L+ Sbjct: 85 KISRYWSDIPTDQYESLKAQLF 106
>MTR10_YEAST (Q99189) mRNA transport regulator MTR10| Length = 972 Score = 38.1 bits (87), Expect = 0.011 Identities = 26/95 (27%), Positives = 48/95 (50%), Gaps = 3/95 (3%) Frame = +2 Query: 188 MEAQATATVKEALAALYHHPDDTIRTAADRWLQKFQHTLDAWQVADSLLHDE---SSNLE 358 M+ + ++ AL + + A ++L++FQ + AW + + +L E ++ LE Sbjct: 1 MDNLQVSDIETALQCISSTASQDDKNKALQFLEQFQRSTVAWSICNEILSKEDPTNALLE 60 Query: 359 TLMFCSQTLRSKVXRDXEELPSEAFRPLQDSLYGL 463 +F +QTLR+KV D +L + +DSL L Sbjct: 61 LNIFAAQTLRNKVTYDLSQLENN-LPQFKDSLLTL 94
>IPO13_RAT (Q9JM04) Importin-13 (Imp13) (Late gestation lung 2 protein)| Length = 963 Score = 37.7 bits (86), Expect = 0.015 Identities = 26/99 (26%), Positives = 46/99 (46%), Gaps = 4/99 (4%) Frame = +2 Query: 161 EEEVGFGADMEAQA----TATVKEALAALYHHPDDTIRTAADRWLQKFQHTLDAWQVADS 328 EE++G A A V++AL LY+ P+ + A +WL + Q + AW + Sbjct: 5 EEQLGAAGAGAAPALDFTVENVEKALHQLYYDPNIENKNLAQKWLMQAQVSPQAWHFSWQ 64 Query: 329 LLHDESSNLETLMFCSQTLRSKVXRDXEELPSEAFRPLQ 445 LL + E F + L K+ R ++P++ + L+ Sbjct: 65 LLQPDKVP-EIQYFGASALHIKISRYWSDIPTDQYESLK 102
>SORL_RABIT (Q95209) Sortilin-related receptor precursor (Sorting| protein-related receptor containing LDLR class A repeats) (SorLA) (SorLA-1) (Low-density lipoprotein receptor relative with 11 ligand-binding repeats) (LDLR relative with 11 ligand-binding Length = 2213 Score = 32.3 bits (72), Expect = 0.62 Identities = 28/96 (29%), Positives = 40/96 (41%), Gaps = 11/96 (11%) Frame = +2 Query: 101 PRKSSTVEGYSRKRAAGGSVEEEVGFGADMEAQATATVKEALAALYHHPDDTIRTA-ADR 277 PR S Y ++ + E++ FGA +A +A YH P D R AD Sbjct: 130 PRSSDVYVSYDYGKSFN-KISEKLNFGAGNNTEAV------VAQFYHSPADNKRYIFADA 182 Query: 278 WLQKFQHTLD----------AWQVADSLLHDESSNL 355 + Q T D ++ AD LLH ++SNL Sbjct: 183 YAQYLWITFDFCNTIHGFSIPFRAADLLLHSKASNL 218
>HPPD_TETTH (Q27203) 4-hydroxyphenylpyruvate dioxygenase (EC 1.13.11.27)| (4HPPD) (HPD) (HPPDase) (4-hydroxyphenylpyruvic acid oxidase) (F-antigen homolog) (TF-AG) Length = 404 Score = 32.0 bits (71), Expect = 0.80 Identities = 16/53 (30%), Positives = 29/53 (54%) Frame = +2 Query: 239 HHPDDTIRTAADRWLQKFQHTLDAWQVADSLLHDESSNLETLMFCSQTLRSKV 397 + PD+ + +AAD W +K W V DS++H E S+L +++ + K+ Sbjct: 201 NQPDNMMTSAAD-WYEKTLDFHRFWSVDDSMIHTEFSSLRSIVMTDYDQKIKM 252
>APXL_HUMAN (Q13796) Apical-like protein (APXL protein)| Length = 1616 Score = 30.0 bits (66), Expect = 3.1 Identities = 25/81 (30%), Positives = 33/81 (40%), Gaps = 3/81 (3%) Frame = +2 Query: 47 SSSMKPYPPRIAGRRSSTPRKSSTVEGYSRKRAAGGSVEEEVGFGADMEAQATATVKEAL 226 S+S P+PPRI GRR T + ++ YS EVG Sbjct: 738 STSGGPHPPRIGGRRRFTAEQK--LKSYSEPEKM-----NEVGLTRGYSP---------- 780 Query: 227 AALYHHP---DDTIRTAADRW 280 + HP +DT+ T ADRW Sbjct: 781 ---HQHPRTSEDTVGTFADRW 798
>MURA_BORPE (Q7VSZ3) UDP-N-acetylglucosamine 1-carboxyvinyltransferase (EC| 2.5.1.7) (Enoylpyruvate transferase) (UDP-N-acetylglucosamine enolpyruvyl transferase) (EPT) Length = 422 Score = 29.6 bits (65), Expect = 4.0 Identities = 20/59 (33%), Positives = 25/59 (42%), Gaps = 10/59 (16%) Frame = +2 Query: 128 YSRKRAAGGSVEEEVGFGADMEAQATA--TVKEALAAL--------YHHPDDTIRTAAD 274 + R RA G E GF DM+AQ A TV + A + Y H + R AD Sbjct: 286 HGRPRAVGARTHEYPGFATDMQAQLMALDTVADGTAVIVENIFENRYMHVQELCRLGAD 344
>MURA_BORBR (Q7WDY6) UDP-N-acetylglucosamine 1-carboxyvinyltransferase (EC| 2.5.1.7) (Enoylpyruvate transferase) (UDP-N-acetylglucosamine enolpyruvyl transferase) (EPT) Length = 422 Score = 29.6 bits (65), Expect = 4.0 Identities = 20/59 (33%), Positives = 25/59 (42%), Gaps = 10/59 (16%) Frame = +2 Query: 128 YSRKRAAGGSVEEEVGFGADMEAQATA--TVKEALAAL--------YHHPDDTIRTAAD 274 + R RA G E GF DM+AQ A TV + A + Y H + R AD Sbjct: 286 HGRPRAVGARTHEYPGFATDMQAQLMALDTVADGTAVIVENIFENRYMHVQELCRLGAD 344
>IKBL_MOUSE (O88995) NF-kappa-B inhibitor-like protein 1 (Inhibitor of kappa| B-like) (I-kappa-B-like) (IkappaBL) (Nuclear factor of kappa light polypeptide gene enhancer in B-cells inhibitor-like 1) Length = 381 Score = 29.3 bits (64), Expect = 5.2 Identities = 30/92 (32%), Positives = 42/92 (45%), Gaps = 6/92 (6%) Frame = +2 Query: 62 PYPPRIAGRRSSTPRKSSTVEGYSRKRAAGGSVEEEVGFGADMEAQATATV------KEA 223 P PPR AG R+ PR + E S R G V G D EA A A V +E Sbjct: 274 PEPPR-AGPRAEHPRGA---ERGSLWRF--GDVPWPCPGGGDPEAMAAALVARGPPLEEQ 327 Query: 224 LAALYHHPDDTIRTAADRWLQKFQHTLDAWQV 319 A + +R DR+LQ+F+ ++ W++ Sbjct: 328 GALKRYLRVQQVRWHPDRFLQRFRSQIETWEL 359
>XPO1_YEAST (P30822) Exportin-1 (Chromosome region maintenance protein 1)| Length = 1084 Score = 29.3 bits (64), Expect = 5.2 Identities = 18/53 (33%), Positives = 26/53 (49%) Frame = +2 Query: 269 ADRWLQKFQHTLDAWQVADSLLHDESSNLETLMFCSQTLRSKVXRDXEELPSE 427 A L KFQ DAWQ AD +L S+N ++ L + R + LP++ Sbjct: 34 AQEILTKFQDNPDAWQKADQIL-QFSTNPQSKFIALSILDKLITRKWKLLPND 85
>DYHC_FUSSO (P78716) Dynein heavy chain, cytosolic (DYHC)| Length = 4349 Score = 28.9 bits (63), Expect = 6.8 Identities = 28/137 (20%), Positives = 53/137 (38%), Gaps = 18/137 (13%) Frame = +2 Query: 77 IAGRRSSTPRKSSTVEGYSRKRAAGGSVEEEVGFGADMEAQATATVKEALAALYH----- 241 +A +R + RK++++E + V + A+A V+EA A++ + Sbjct: 3253 VADQREAEQRKNTSLEIQANLEKQEAEVASRKKVVLEDLAKAEPAVEEAKASVSNIKRQH 3312 Query: 242 --------HPDDTIRTAADRWLQKFQHTLDAWQVADSLLHDESSNLETLMF-----CSQT 382 +P +R A D H ++ W+ +L + LMF ++ Sbjct: 3313 LTEVRSMGNPPQGVRLAMDAVCTLLGHRINDWKAVQGILRKDDFIASILMFDNAKQMTKG 3372 Query: 383 LRSKVXRDXEELPSEAF 433 LR+K+ D P F Sbjct: 3373 LRNKMRNDFLSNPEFTF 3389
>ESYN_GIBPU (Q00868) Enniatin synthetase [Includes: N-methylcyclopeptide| synthetase (EC 6.3.2.-); S-adenosyl-L-methionine-dependent N-methyltransferase (EC 2.1.1.-)] (Fragment) Length = 983 Score = 28.5 bits (62), Expect = 8.9 Identities = 23/75 (30%), Positives = 33/75 (44%), Gaps = 17/75 (22%) Frame = +2 Query: 158 VEEEVGFGADMEAQATATVKEALAALYHH--------------PDDTIR---TAADRWLQ 286 + E GF ++ A + AL A++HH D+ +R T A+R LQ Sbjct: 756 IANEAGFRVEVSAARQWSQNGALDAVFHHFPSSNTDRTLIQFPTDNQLRSSLTLANRPLQ 815 Query: 287 KFQHTLDAWQVADSL 331 K Q A QV +SL Sbjct: 816 KLQRRRAALQVRESL 830 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 45,160,609 Number of Sequences: 219361 Number of extensions: 631377 Number of successful extensions: 2654 Number of sequences better than 10.0: 16 Number of HSP's better than 10.0 without gapping: 2445 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 2651 length of database: 80,573,946 effective HSP length: 103 effective length of database: 57,979,763 effective search space used: 3014947676 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
