ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bastl31h07 |
|---|---|
| Clone Library Name | barley_pub |
>TNC6B_HUMAN (Q9UPQ9) Trinucleotide repeat-containing 6B protein| Length = 1723 Score = 30.0 bits (66), Expect = 1.4 Identities = 12/34 (35%), Positives = 19/34 (55%), Gaps = 5/34 (14%) Frame = -2 Query: 129 WN-----PEHLSKFHQEEKSKENPSPPQPNCAGA 43 WN P +K HQ+++ + P PPQP +G+ Sbjct: 806 WNETGRQPNSWNKQHQQQQPPQQPPPPQPEASGS 839
>RAB3C_HUMAN (Q96E17) Ras-related protein Rab-3C| Length = 227 Score = 29.6 bits (65), Expect = 1.8 Identities = 11/17 (64%), Positives = 12/17 (70%) Frame = -2 Query: 99 QEEKSKENPSPPQPNCA 49 Q + KE P PPQPNCA Sbjct: 210 QNTRLKETPPPPQPNCA 226
>MILK1_MOUSE (Q8BGT6) Molecule interacting with Rab13 (MIRab13) (MICAL-like| protein 1) Length = 870 Score = 29.3 bits (64), Expect = 2.4 Identities = 12/36 (33%), Positives = 22/36 (61%) Frame = -2 Query: 141 SATDWNPEHLSKFHQEEKSKENPSPPQPNCAGANPI 34 S T+ P+ + F +EE+ + P+PP P+ + A P+ Sbjct: 411 SGTEPEPKPYNPFEEEEEEEGEPAPPVPSPSLAPPV 446
>C5AP_STRP6 (Q5X9R0) C5a peptidase precursor (EC 3.4.21.-) (SCP)| Length = 1184 Score = 29.3 bits (64), Expect = 2.4 Identities = 18/59 (30%), Positives = 30/59 (50%) Frame = +1 Query: 205 DIEAGAVVTDSDSSRRPQDNTATTIPNSGSLEGSSHKTTKTTRFKDDGDDGVVEITLDI 381 DI+A V D+ ++ + + T P + S E S K TKT + DD ++ V + D+ Sbjct: 28 DIKANTVTEDTPATEQAVE---TPQPTAVSEEAPSSKETKTPQTPDDAEETVADKANDL 83
>WRKY1_ARATH (Q9SI37) WRKY transcription factor 1 (WRKY DNA-binding protein 1)| (Zinc-dependent activator protein 1) (Transcription factor ZAP1) Length = 487 Score = 28.9 bits (63), Expect = 3.2 Identities = 14/44 (31%), Positives = 22/44 (50%) Frame = +1 Query: 232 DSDSSRRPQDNTATTIPNSGSLEGSSHKTTKTTRFKDDGDDGVV 363 + D+++ PQ +T +I +E K TKT F+ D G V Sbjct: 385 EGDANKTPQSSTLQSITKDQHVEDHLRKKTKTNGFEKSLDQGPV 428
>C5AP_STRP1 (P58099) C5a peptidase precursor (EC 3.4.21.-) (SCP)| Length = 1181 Score = 28.9 bits (63), Expect = 3.2 Identities = 17/59 (28%), Positives = 30/59 (50%) Frame = +1 Query: 205 DIEAGAVVTDSDSSRRPQDNTATTIPNSGSLEGSSHKTTKTTRFKDDGDDGVVEITLDI 381 DI+A V D+ ++ + + T P + S E S K TKT + DD ++ + + D+ Sbjct: 28 DIKANTVTEDTPATEQAVE---TPQPTAVSEEAPSSKETKTPQTPDDAEETIADDANDL 83
>FAS_HUMAN (P49327) Fatty acid synthase (EC 2.3.1.85) [Includes:| [Acyl-carrier-protein] S-acetyltransferase (EC 2.3.1.38); [Acyl-carrier-protein] S-malonyltransferase (EC 2.3.1.39); 3-oxoacyl-[acyl-carrier-protein] synthase (EC 2.3.1.41); 3-oxoacyl-[acyl- Length = 2511 Score = 28.9 bits (63), Expect = 3.2 Identities = 16/59 (27%), Positives = 29/59 (49%), Gaps = 6/59 (10%) Frame = -2 Query: 201 HLHLYLSGQFSPSVLIPREISATDWNPEHLS------KFHQEEKSKENPSPPQPNCAGA 43 HL+ + G SP L+ +ATD +P+ L + H + + +P+ P P+ G+ Sbjct: 1251 HLYSRIPGLLSPHPLLQLSYTATDRHPQALEAAQAELQQHDVAQGQWDPADPAPSALGS 1309
>RAB3C_RAT (P62824) Ras-related protein Rab-3C| Length = 227 Score = 28.1 bits (61), Expect = 5.4 Identities = 10/16 (62%), Positives = 11/16 (68%) Frame = -2 Query: 99 QEEKSKENPSPPQPNC 52 Q + KE P PPQPNC Sbjct: 210 QSTRLKETPPPPQPNC 225
>RAB3C_MOUSE (P62823) Ras-related protein Rab-3C| Length = 227 Score = 28.1 bits (61), Expect = 5.4 Identities = 10/16 (62%), Positives = 11/16 (68%) Frame = -2 Query: 99 QEEKSKENPSPPQPNC 52 Q + KE P PPQPNC Sbjct: 210 QSTRLKETPPPPQPNC 225
>PMPB_CHLTR (O84418) Probable outer membrane protein pmpB precursor| (Polymorphic membrane protein B) Length = 1754 Score = 28.1 bits (61), Expect = 5.4 Identities = 18/48 (37%), Positives = 28/48 (58%), Gaps = 2/48 (4%) Frame = +1 Query: 190 EMEMPDIEAGAVVTDSDSSRRPQDNT-ATTIPNSG-SLEGSSHKTTKT 327 ++ +P +A A D+ +S PQ + ATT+ NSG S GS T++T Sbjct: 385 KITLPKAQASAGNADAWASSSPQSGSGATTVSNSGDSSSGSDSDTSET 432
>PER_DROPV (P91698) Period circadian protein (Fragment)| Length = 396 Score = 28.1 bits (61), Expect = 5.4 Identities = 25/94 (26%), Positives = 42/94 (44%), Gaps = 11/94 (11%) Frame = -2 Query: 276 CCRSIVLWPS*TIRI-------SDYRA----SFNIRHLHLYLSGQFSPSVLIPREISATD 130 C ++I LWP ++ I S + A SF+ +H L+ + + P+ + S+T+ Sbjct: 280 CTQNINLWPPFSVGITTPTSVLSSHTAVPPSSFSPQH-SLFPTFYYIPASIAASSPSSTN 338 Query: 129 WNPEHLSKFHQEEKSKENPSPPQPNCAGANPIEH 28 NP K S E PS Q A P+++ Sbjct: 339 TNPNRPHKHAHVHNSSEKPSTSQA-AAATMPLQY 371
>PER_DROPU (P91697) Period circadian protein (Fragment)| Length = 396 Score = 28.1 bits (61), Expect = 5.4 Identities = 25/94 (26%), Positives = 42/94 (44%), Gaps = 11/94 (11%) Frame = -2 Query: 276 CCRSIVLWPS*TIRI-------SDYRA----SFNIRHLHLYLSGQFSPSVLIPREISATD 130 C ++I LWP ++ I S + A SF+ +H L+ + + P+ + S+T+ Sbjct: 280 CTQNINLWPPFSVGITTPTSVLSSHTAVPPSSFSPQH-SLFPTFYYIPASIAASSPSSTN 338 Query: 129 WNPEHLSKFHQEEKSKENPSPPQPNCAGANPIEH 28 NP K S E PS Q A P+++ Sbjct: 339 TNPNRPHKHAHVHNSSEKPSTSQA-AAATMPLQY 371
>PER_DROWI (Q03297) Period circadian protein (Fragment)| Length = 1093 Score = 28.1 bits (61), Expect = 5.4 Identities = 25/94 (26%), Positives = 42/94 (44%), Gaps = 11/94 (11%) Frame = -2 Query: 276 CCRSIVLWPS*TIRI-------SDYRA----SFNIRHLHLYLSGQFSPSVLIPREISATD 130 C ++I LWP ++ I S + A SF+ +H L+ + + P+ + S+T+ Sbjct: 803 CTQNINLWPPFSVGITTPTSVLSSHTAVPPSSFSPQH-SLFPTFYYIPASIAASSPSSTN 861 Query: 129 WNPEHLSKFHQEEKSKENPSPPQPNCAGANPIEH 28 NP K S E PS Q A P+++ Sbjct: 862 TNPNRPHKHAHVHSSSEKPSTSQA-AAATMPLQY 894
>PER_DROEQ (P92203) Period circadian protein (Fragment)| Length = 395 Score = 27.7 bits (60), Expect = 7.0 Identities = 25/94 (26%), Positives = 41/94 (43%), Gaps = 11/94 (11%) Frame = -2 Query: 276 CCRSIVLWPS*TIRI-------SDYRA----SFNIRHLHLYLSGQFSPSVLIPREISATD 130 C ++I LWP ++ I S + A SF+ +H L+ + + P+ + S T+ Sbjct: 279 CTQNINLWPPFSVGITTPTSVLSSHTAVPPSSFSPQH-SLFPTFYYIPASIAASSPSGTN 337 Query: 129 WNPEHLSKFHQEEKSKENPSPPQPNCAGANPIEH 28 NP K S E PS Q A P+++ Sbjct: 338 TNPNRPHKHAHVHNSSEKPSTSQA-AAATMPLQY 370
>PER_DROIN (P91613) Period circadian protein (Fragment)| Length = 391 Score = 27.7 bits (60), Expect = 7.0 Identities = 24/100 (24%), Positives = 42/100 (42%), Gaps = 11/100 (11%) Frame = -2 Query: 294 TSTVWDCCRSIVLWPS*TIRISD-----------YRASFNIRHLHLYLSGQFSPSVLIPR 148 T + C ++I LWP ++ I+ ++SF+ +H L+ + + P+ + Sbjct: 269 TQSGLSCTQNINLWPPFSVGITTPTSVLSSHTAVAQSSFSPQH-SLFPTFYYIPASIAAS 327 Query: 147 EISATDWNPEHLSKFHQEEKSKENPSPPQPNCAGANPIEH 28 S T NP K S E PS Q A P+++ Sbjct: 328 SPSGTSPNPNRPHKHAHVHSSSEKPSTSQA-AAATMPLQY 366
>FAS_RAT (P12785) Fatty acid synthase (EC 2.3.1.85) [Includes:| [Acyl-carrier-protein] S-acetyltransferase (EC 2.3.1.38); [Acyl-carrier-protein] S-malonyltransferase (EC 2.3.1.39); 3-oxoacyl-[acyl-carrier-protein] synthase (EC 2.3.1.41); 3-oxoacyl-[acyl-ca Length = 2505 Score = 27.7 bits (60), Expect = 7.0 Identities = 16/59 (27%), Positives = 29/59 (49%), Gaps = 6/59 (10%) Frame = -2 Query: 201 HLHLYLSGQFSPSVLIPREISATDWNPEHLS------KFHQEEKSKENPSPPQPNCAGA 43 HL+ ++S + ++ E +ATD +P+ L + H + + +PS P P GA Sbjct: 1246 HLYSHISALLNTQPMLQLEYTATDRHPQALKDVQTKLQQHDVAQGQWDPSGPAPTNLGA 1304
>ZN638_MOUSE (Q61464) Zinc finger protein 638 (Nuclear protein 220) (Zinc-finger| matrin-like protein) Length = 1960 Score = 27.7 bits (60), Expect = 7.0 Identities = 15/42 (35%), Positives = 18/42 (42%), Gaps = 6/42 (14%) Frame = -2 Query: 132 DWNPEHLSKFHQEEKSKENPSP------PQPNCAGANPIEHR 25 DWNPE L E KEN +P P P + + HR Sbjct: 461 DWNPEILPSRRNESNRKENETPRRRSHSPSPRHSRRSSSGHR 502
>KS6B2_MOUSE (Q9Z1M4) Ribosomal protein S6 kinase beta-2 (EC 2.7.11.1) (S6K-beta| 2) (70 kDa ribosomal protein S6 kinase 2) (p70-S6KB) (p70 ribosomal S6 kinase beta) (p70 S6Kbeta) (S6K2) Length = 485 Score = 27.7 bits (60), Expect = 7.0 Identities = 12/39 (30%), Positives = 20/39 (51%) Frame = -2 Query: 174 FSPSVLIPREISATDWNPEHLSKFHQEEKSKENPSPPQP 58 F P + PR ++++ P KF E + +P PP+P Sbjct: 404 FQPKLRSPRRLNSSPRTPISPLKFSPFEGFRPSPGPPEP 442
>ZN638_HUMAN (Q14966) Zinc finger protein 638 (Nuclear protein 220) (Zinc-finger| matrin-like protein) (Cutaneous T-cell lymphoma-associated antigen se33-1) (CTCL tumor antigen se33-1) Length = 1978 Score = 27.7 bits (60), Expect = 7.0 Identities = 15/42 (35%), Positives = 18/42 (42%), Gaps = 6/42 (14%) Frame = -2 Query: 132 DWNPEHLSKFHQEEKSKENPSP------PQPNCAGANPIEHR 25 DWNPE L E KEN +P P P + + HR Sbjct: 463 DWNPEILPSRRNEGNRKENETPRRRSHSPSPRRSRRSSSSHR 504
>MDC1_MOUSE (Q5PSV9) Mediator of DNA damage checkpoint protein 1| Length = 1707 Score = 27.7 bits (60), Expect = 7.0 Identities = 20/63 (31%), Positives = 30/63 (47%), Gaps = 1/63 (1%) Frame = -1 Query: 205 QASPSLPL-RAIFSFCLNPERDFSH*LEPGASLEIPPRRKEQRKPKSAATKLRRREPY*T 29 Q S ++PL +S PE S GAS PR+K R+ S T + + EP T Sbjct: 1408 QGSRTVPLGHKSYSALSEPEPQSSASQSSGASEADSPRQKRPRRQASQKTVVIKEEPVET 1467 Query: 28 QMR 20 +++ Sbjct: 1468 EVK 1470
>FAS_MOUSE (P19096) Fatty acid synthase (EC 2.3.1.85) [Includes:| [Acyl-carrier-protein] S-acetyltransferase (EC 2.3.1.38); [Acyl-carrier-protein] S-malonyltransferase (EC 2.3.1.39); 3-oxoacyl-[acyl-carrier-protein] synthase (EC 2.3.1.41); 3-oxoacyl-[acyl- Length = 2504 Score = 27.7 bits (60), Expect = 7.0 Identities = 16/59 (27%), Positives = 27/59 (45%), Gaps = 6/59 (10%) Frame = -2 Query: 201 HLHLYLSGQFSPSVLIPREISATDWNPEHLSKF------HQEEKSKENPSPPQPNCAGA 43 HL+ + + ++ E +ATD +P+ L H + + NPS P P+ GA Sbjct: 1246 HLYSRIPALLNTQPMLQLEYTATDRHPQALKDVQTKLQQHDVAQGQWNPSDPAPSSLGA 1304
>NORM_XYLFT (Q879Z5) Probable multidrug resistance protein norM| (Multidrug-efflux transporter) Length = 469 Score = 27.3 bits (59), Expect = 9.2 Identities = 13/22 (59%), Positives = 16/22 (72%) Frame = -3 Query: 338 LNLVVFVVLWLEPSKLPLFGIV 273 L LV+F L + P+ LPLFGIV Sbjct: 120 LGLVMFTFLSVVPALLPLFGIV 141
>NORM_XYLFA (Q9PA34) Probable multidrug resistance protein norM| (Multidrug-efflux transporter) Length = 469 Score = 27.3 bits (59), Expect = 9.2 Identities = 13/22 (59%), Positives = 16/22 (72%) Frame = -3 Query: 338 LNLVVFVVLWLEPSKLPLFGIV 273 L LV+F L + P+ LPLFGIV Sbjct: 120 LGLVMFTFLSVVPALLPLFGIV 141
>POL1_BAYMJ (Q01206) Genome polyprotein 1 [Contains: Protein P3; 6 kDa protein 1| (6K1); Cytoplasmic inclusion protein (CI); 6 kDa protein 2 (6K2); Viral genome-linked protein (VPg); Nuclear inclusion protein A (EC 3.4.22.44) (NI-a) (NIa) (NIa-pro); Nuclea Length = 2410 Score = 27.3 bits (59), Expect = 9.2 Identities = 21/68 (30%), Positives = 29/68 (42%) Frame = +1 Query: 154 D*DRRRKLP*EVEMEMPDIEAGAVVTDSDSSRRPQDNTATTIPNSGSLEGSSHKTTKTTR 333 D DRRRK+ E +EA V +D++ +P + TAT P + KT R Sbjct: 2140 DADRRRKV------EADRVEAARVKKAADAALKPVNLTATRTPTE---DDGKLKTPSGAR 2190 Query: 334 FKDDGDDG 357 DG Sbjct: 2191 IPSSAADG 2198
>NFM_MOUSE (P08553) Neurofilament triplet M protein (160 kDa neurofilament| protein) (Neurofilament medium polypeptide) (NF-M) Length = 848 Score = 27.3 bits (59), Expect = 9.2 Identities = 24/83 (28%), Positives = 37/83 (44%), Gaps = 3/83 (3%) Frame = +1 Query: 142 NLSRD*DRRRKLP*EVEMEMPDIEAGAVVTDSDSSRRPQDNTATTIPNSGSLEGSSHKTT 321 +L +D + P E E + E G+ SD R PQ++ I +G +EG + Sbjct: 689 SLEKDTKEEKPQPQEKVKEKAEEEGGSEEEGSD--RSPQESKKEDIAINGEVEGKEEEEQ 746 Query: 322 KTTRFKDDG---DDGVVEITLDI 381 +T K G + GVV LD+ Sbjct: 747 ETQE-KGSGREEEKGVVTNGLDV 768
>KITH_BHV16 (P24096) Thymidine kinase (EC 2.7.1.21)| Length = 357 Score = 27.3 bits (59), Expect = 9.2 Identities = 17/51 (33%), Positives = 27/51 (52%) Frame = +3 Query: 48 LRSLVAADLGFLCSFLLGGISRDAPGSNQWLKSLSGLRQKEKIALRGRDGD 200 LR + A DL L + + +APG+N + +L Q+ ++A R R GD Sbjct: 149 LREINAEDLLMLAA----AMPPEAPGANLVVCTLPPAEQQRRLAARARPGD 195
>EP400_HUMAN (Q96L91) E1A-binding protein p400 (EC 3.6.1.-) (p400 kDa| SWI2/SNF2-related protein) (Domino homolog) (hDomino) (CAG repeat protein 32) (Trinucleotide repeat-containing gene 12 protein) Length = 3160 Score = 27.3 bits (59), Expect = 9.2 Identities = 16/40 (40%), Positives = 20/40 (50%), Gaps = 1/40 (2%) Frame = -2 Query: 153 PREISATD-WNPEHLSKFHQEEKSKENPSPPQPNCAGANP 37 P +I A PEHL K Q++K + P PP P A P Sbjct: 2804 PAQIKAVGKLTPEHLIKM-QKQKLQMPPQPPPPQAQSAPP 2842
>DPO3_OCEIH (Q8EQU6) DNA polymerase III polC-type (EC 2.7.7.7) (PolIII)| Length = 1428 Score = 27.3 bits (59), Expect = 9.2 Identities = 10/20 (50%), Positives = 14/20 (70%) Frame = +2 Query: 125 FQSVAEISLGIKTEGENCPE 184 F S+AE+SL + E +CPE Sbjct: 70 FASIAEVSLTLSAENRHCPE 89
>BIMB_EMENI (P33144) Separin (EC 3.4.22.49) (Separase) (Cell| division-associated protein bimB) Length = 2067 Score = 27.3 bits (59), Expect = 9.2 Identities = 11/30 (36%), Positives = 18/30 (60%) Frame = -3 Query: 128 GTRSISRNSTKKKRAKKTQVRRNQTAQART 39 GT++ + N+T RAK T+ + T+ RT Sbjct: 55 GTKATATNATASSRAKTTRTKSTSTSTTRT 84
>PGCA_CHICK (P07898) Aggrecan core protein precursor (Cartilage-specific| proteoglycan core protein) (CSPCP) Length = 2109 Score = 27.3 bits (59), Expect = 9.2 Identities = 15/44 (34%), Positives = 24/44 (54%) Frame = -2 Query: 174 FSPSVLIPREISATDWNPEHLSKFHQEEKSKENPSPPQPNCAGA 43 F P+ +IP E S PE +F +S E+P+ +P+ +GA Sbjct: 788 FPPATVIPEETSTNASIPEVSGEF---PESGEHPTSGEPSASGA 828
>MAP4_BOVIN (P36225) Microtubule-associated protein 4 (MAP 4)| (Microtubule-associated protein-U) (MAP-U) Length = 1072 Score = 27.3 bits (59), Expect = 9.2 Identities = 16/48 (33%), Positives = 22/48 (45%) Frame = -2 Query: 174 FSPSVLIPREISATDWNPEHLSKFHQEEKSKENPSPPQPNCAGANPIE 31 F+P+ ++P+ SA N HL F E P P QP A +E Sbjct: 184 FAPAAVVPQGWSAEAPNLAHLESFTSPEAV---PQPLQPTAEPAEKVE 228
>UL35_HCMVA (P16766) Protein UL35| Length = 640 Score = 27.3 bits (59), Expect = 9.2 Identities = 13/35 (37%), Positives = 21/35 (60%) Frame = +1 Query: 226 VTDSDSSRRPQDNTATTIPNSGSLEGSSHKTTKTT 330 VTD+ SS ++++ PNS SL + +T+TT Sbjct: 496 VTDAASSSSASSSSSSASPNSVSLPSARSSSTRTT 530
>KITH_BHV1Q (P24424) Thymidine kinase (EC 2.7.1.21)| Length = 359 Score = 27.3 bits (59), Expect = 9.2 Identities = 17/51 (33%), Positives = 27/51 (52%) Frame = +3 Query: 48 LRSLVAADLGFLCSFLLGGISRDAPGSNQWLKSLSGLRQKEKIALRGRDGD 200 LR + A DL L + + +APG+N + +L Q+ ++A R R GD Sbjct: 150 LREINAEDLLMLAA----AMPPEAPGANLVVCTLPPAEQQRRLAARARPGD 196 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 54,171,478 Number of Sequences: 219361 Number of extensions: 1022525 Number of successful extensions: 3607 Number of sequences better than 10.0: 33 Number of HSP's better than 10.0 without gapping: 3500 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 3603 length of database: 80,573,946 effective HSP length: 102 effective length of database: 58,199,124 effective search space used: 1396778976 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
