ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name bastl31h05
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1OR1M1_HUMAN (Q8NGA1) Olfactory receptor 1M1 (Olfactory receptor ... 30 2.8
2CEFE_NOCLA (Q03047) Deacetoxycephalosporin C synthetase (EC 1.14... 29 6.2
3IF3A_SCHPO (O74760) Probable eukaryotic translation initiation f... 28 8.1
4BAT2_MOUSE (Q7TSC1) Large proline-rich protein BAT2 (HLA-B-assoc... 28 8.1
5BAT2_RAT (Q6MG48) Large proline-rich protein BAT2 (HLA-B-associa... 28 8.1

>OR1M1_HUMAN (Q8NGA1) Olfactory receptor 1M1 (Olfactory receptor 19-6) (OR19-6)|
          Length = 313

 Score = 30.0 bits (66), Expect = 2.8
 Identities = 12/34 (35%), Positives = 23/34 (67%)
 Frame = -2

Query: 340 ILTETVPQVVLS*QNGSRASDVPTEIIELYSTYF 239
           + T T+P++++S Q GS+A   P  +I++Y  +F
Sbjct: 73  LATNTIPKMLVSLQTGSKAISYPCCLIQMYFFHF 106



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>CEFE_NOCLA (Q03047) Deacetoxycephalosporin C synthetase (EC 1.14.20.1) (DAOCS)|
           (Expandase)
          Length = 314

 Score = 28.9 bits (63), Expect = 6.2
 Identities = 13/33 (39%), Positives = 17/33 (51%)
 Frame = +3

Query: 222 QIQEDGK*VEYSSMISVGTSDALEPFCQLRTTW 320
           QI   GK  +YS   S+GT+D L P  +    W
Sbjct: 89  QITNTGKYTDYSMSYSMGTADNLFPSAEFEKAW 121



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>IF3A_SCHPO (O74760) Probable eukaryotic translation initiation factor 3 110|
           kDa subunit (eIF3 p110) (Translation initiation factor
           eIF3, p110 subunit) (eIF3a)
          Length = 932

 Score = 28.5 bits (62), Expect = 8.1
 Identities = 14/31 (45%), Positives = 16/31 (51%)
 Frame = -1

Query: 110 GAWRRGGGRDGTAEAASPLGWTRGETRVSIP 18
           GAWRRGG   G     SP     G +R S+P
Sbjct: 879 GAWRRGGASAGGVSRDSPRYSRGGYSRGSVP 909



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>BAT2_MOUSE (Q7TSC1) Large proline-rich protein BAT2 (HLA-B-associated transcript|
            2)
          Length = 2158

 Score = 28.5 bits (62), Expect = 8.1
 Identities = 19/53 (35%), Positives = 23/53 (43%), Gaps = 7/53 (13%)
 Frame = -1

Query: 167  RARKTSLGSRGR-------RRCLNLEGAWRRGGGRDGTAEAASPLGWTRGETR 30
            R  + + G RGR       R      G   RGGG  GT   ++P G T  ETR
Sbjct: 1034 RGFRGTYGGRGRGARSREFRSYREFRGDDGRGGGSGGTNHPSAPRGRTASETR 1086



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>BAT2_RAT (Q6MG48) Large proline-rich protein BAT2 (HLA-B-associated transcript|
            2)
          Length = 2161

 Score = 28.5 bits (62), Expect = 8.1
 Identities = 19/53 (35%), Positives = 23/53 (43%), Gaps = 7/53 (13%)
 Frame = -1

Query: 167  RARKTSLGSRGR-------RRCLNLEGAWRRGGGRDGTAEAASPLGWTRGETR 30
            R  + + G RGR       R      G   RGGG  GT   ++P G T  ETR
Sbjct: 1039 RGFRGTYGGRGRGARSREFRSYREFRGDDGRGGGSGGTNHPSAPRGRTASETR 1091


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 52,994,478
Number of Sequences: 219361
Number of extensions: 844403
Number of successful extensions: 1907
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 1869
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1907
length of database: 80,573,946
effective HSP length: 102
effective length of database: 58,199,124
effective search space used: 2735358828
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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