ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name bastl31h03
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1dbj|AK101888.1| Oryza sativa (japonica cultivar-group) cDNA clon... 92 2e-15
2gb|AC146937.2| Oryza sativa (japonica cultivar-group) chromosome... 76 1e-10
3gb|AC116367.10| Oryza sativa (japonica cultivar-group) chromosom... 76 1e-10
4dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic D... 76 1e-10
5gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome... 76 1e-10
6ref|NM_187868.1| Oryza sativa (japonica cultivar-group), Ozsa831... 46 0.11
7dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic D... 46 0.11
8dbj|AP001278.1| Oryza sativa (japonica cultivar-group) genomic D... 46 0.11
9dbj|AP000816.1| Oryza sativa (japonica cultivar-group) genomic D... 46 0.11
10ref|XM_479592.1| Oryza sativa (japonica cultivar-group), mRNA 42 1.7
11gb|AC121328.3| Oryza sativa (japonica cultivar-group) chromosome... 42 1.7
12gb|AC104448.2| Homo sapiens chromosome 3 clone RP11-24C3, comple... 42 1.7
13dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic D... 42 1.7
14dbj|AP003813.4| Oryza sativa (japonica cultivar-group) genomic D... 42 1.7
15dbj|AP003818.2| Oryza sativa (japonica cultivar-group) genomic D... 42 1.7
16dbj|AK062636.1| Oryza sativa (japonica cultivar-group) cDNA clon... 42 1.7
17gb|AC134772.2| Homo sapiens chromosome 3 clone RP13-794C1, compl... 42 1.7
18ref|XM_480820.1| Oryza sativa (japonica cultivar-group), mRNA 40 6.8
19ref|NM_192244.1| Oryza sativa (japonica cultivar-group), predic... 40 6.8
20gb|CP000067.1| Trypanosoma brucei chromosome 4, complete sequence 40 6.8
21gb|AC103580.4| Trypanosoma brucei chromosome 4 clone RPCI93-5E12... 40 6.8
22gb|AC115937.14| Mus musculus chromosome 5, clone RP24-547J21, co... 40 6.8
23gb|AE000516.2| Mycobacterium tuberculosis CDC1551, complete genome 40 6.8
24gb|AE017283.1| Propionibacterium acnes KPA171202, complete genome 40 6.8
25ref|XM_821735.1| Trypanosoma brucei TREU927 clone RPCI93-5E12 dy... 40 6.8
26gb|AY459338.1| Oryza sativa (japonica cultivar-group) clone CL02... 40 6.8
27gb|AC125183.4| Mus musculus BAC clone RP23-297M4 from 5, complet... 40 6.8
28gb|CP000300.1| Methanococcoides burtonii DSM 6242, complete genome 40 6.8
29emb|AL353588.25| Human DNA sequence from clone RP11-444E17 on ch... 40 6.8
30emb|BX842574.1| Mycobacterium tuberculosis H37Rv complete genome... 40 6.8
31emb|BX248337.1| Mycobacterium bovis subsp. bovis AF2122/97 compl... 40 6.8
32emb|AL627094.2| Zebrafish DNA sequence from clone RP71-PACKTRZ i... 40 6.8
33emb|BX530079.19| Zebrafish DNA sequence from clone DKEY-51A16 in... 40 6.8
34dbj|AP003707.4| Oryza sativa (japonica cultivar-group) genomic D... 40 6.8
35ref|NM_001013520.1| Danio rerio cadherin 6 (cdh6), mRNA 40 6.8
36gb|U82619.2|SFU82619 Shigella flexneri bacteriophage V, complete... 40 6.8
37gb|AC175674.2| Gallus gallus BAC clone CH261-137E22 from chromos... 40 6.8
38dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic D... 40 6.8
39gb|AC007881.4| Homo sapiens BAC clone RP11-467P9 from 2, complet... 40 6.8
40dbj|AP006843.2| Oryza sativa (japonica cultivar-group) genomic D... 40 6.8
41dbj|BA000030.2| Streptomyces avermitilis MA-4680 genomic DNA, co... 40 6.8
42gb|BC090908.1| Danio rerio cadherin 6, mRNA (cDNA clone MGC:1036... 40 6.8
43dbj|AP004559.2| Oryza sativa (japonica cultivar-group) genomic D... 40 6.8
44dbj|AP003607.3| Oryza sativa (japonica cultivar-group) genomic D... 40 6.8
45dbj|AP004367.4| Oryza sativa (japonica cultivar-group) genomic D... 40 6.8
46dbj|AB193290.1| Danio rerio cdh6 mRNA for cadherin 6, complete cds 40 6.8
47dbj|AP003504.1| Oryza sativa (japonica cultivar-group) genomic D... 40 6.8
48dbj|AP006165.2| Oryza sativa (japonica cultivar-group) genomic D... 40 6.8
49gb|AE004992.1| Halobacterium sp. NRC-1 section 23 of 170 of the ... 40 6.8
50dbj|AK111371.1| Oryza sativa (japonica cultivar-group) cDNA clon... 40 6.8
51dbj|AK103824.1| Oryza sativa (japonica cultivar-group) cDNA clon... 40 6.8
52dbj|AK101659.1| Oryza sativa (japonica cultivar-group) cDNA clon... 40 6.8
53gb|AE015451.1| Pseudomonas putida KT2440 complete genome 40 6.8
54gb|AE017221.1| Thermus thermophilus HB27, complete genome 40 6.8 
>dbj|AK101888.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033070M12, full
           insert sequence
          Length = 3586

 Score = 91.7 bits (46), Expect = 2e-15
 Identities = 97/114 (85%)
 Strand = Plus / Plus

                                                                       
Query: 353 tgcttcgagtggaacctgcaattcttcgagtgctgattgaagtttttcgccaagttgcgg 412
           |||||| ||||||||||    ||||||||||  ||||||||||||| ||||||||    |
Sbjct: 387 tgcttcaagtggaacctttccttcttcgagtattgattgaagttttccgccaagtcatag 446

                                                                 
Query: 413 agaaagattttgtcaaggagaattcgtggcctgaacttgtgcctcagttgaagc 466
           | ||||||||||||||||| |||| ||||||||||||||| || ||||||||||
Sbjct: 447 aaaaagattttgtcaaggaaaatttgtggcctgaacttgtcccccagttgaagc 500



 Score = 75.8 bits (38), Expect = 1e-10
 Identities = 117/142 (82%), Gaps = 1/142 (0%)
 Strand = Plus / Plus

                                                                       
Query: 104 ctcctcgccgccaccctcagcgccgacaaaacgtccgtggacgccgccaccg-ctggttc 162
           |||||| |||||||||| ||| |||||||  || | |||||||||||||| |   || ||
Sbjct: 137 ctcctctccgccaccctgagccccgacaaggcggcggtggacgccgccacggaagggctc 196

                                                                       
Query: 163 gaccggatctccgcggccggcgacccccgcttccccatcgccctcctcgccgtcgccgca 222
             | ||||| |||| |||  ||||||||||||||||||| ||||||||||||||||||||
Sbjct: 197 tccaggatcgccgccgcctccgacccccgcttccccatctccctcctcgccgtcgccgca 256

                                 
Query: 223 ggggatggtgatcaaggtacaa 244
           |  ||||| || ||||| ||||
Sbjct: 257 gctgatggggaccaaggaacaa 278
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>gb|AC146937.2| Oryza sativa (japonica cultivar-group) chromosome 11 clone
            OSJNBa0004O15 map near R3342S, complete sequence
          Length = 140142

 Score = 75.8 bits (38), Expect = 1e-10
 Identities = 41/42 (97%)
 Strand = Plus / Minus

                                                      
Query: 183  cgacccccgcttccccatcgccctcctcgccgtcgccgcagg 224
            ||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 5535 cgacccccgcttccccatctccctcctcgccgtcgccgcagg 5494



 Score = 71.9 bits (36), Expect = 2e-09
 Identities = 48/52 (92%)
 Strand = Plus / Minus

                                                                
Query: 415  aaagattttgtcaaggagaattcgtggcctgaacttgtgcctcagttgaagc 466
            ||||||||||||||||| |||| ||||||||||||||| || ||||||||||
Sbjct: 4547 aaagattttgtcaaggaaaatttgtggcctgaacttgtcccccagttgaagc 4496



 Score = 44.1 bits (22), Expect = 0.44
 Identities = 43/50 (86%)
 Strand = Plus / Minus

                                                              
Query: 104  ctcctcgccgccaccctcagcgccgacaaaacgtccgtggacgccgccac 153
            |||||| |||||||||| ||| |||||||  || | ||||||||||||||
Sbjct: 5615 ctcctctccgccaccctgagccccgacaaggcggcggtggacgccgccac 5566
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>gb|AC116367.10| Oryza sativa (japonica cultivar-group) chromosome 11 clone OSJNBa0059H21
              map R3342S, complete sequence
          Length = 133790

 Score = 75.8 bits (38), Expect = 1e-10
 Identities = 41/42 (97%)
 Strand = Plus / Minus

                                                        
Query: 183    cgacccccgcttccccatcgccctcctcgccgtcgccgcagg 224
              ||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 129234 cgacccccgcttccccatctccctcctcgccgtcgccgcagg 129193



 Score = 71.9 bits (36), Expect = 2e-09
 Identities = 48/52 (92%)
 Strand = Plus / Minus

                                                                  
Query: 415    aaagattttgtcaaggagaattcgtggcctgaacttgtgcctcagttgaagc 466
              ||||||||||||||||| |||| ||||||||||||||| || ||||||||||
Sbjct: 128246 aaagattttgtcaaggaaaatttgtggcctgaacttgtcccccagttgaagc 128195



 Score = 71.9 bits (36), Expect = 2e-09
 Identities = 48/52 (92%)
 Strand = Plus / Plus

                                                               
Query: 415 aaagattttgtcaaggagaattcgtggcctgaacttgtgcctcagttgaagc 466
           ||||||||||||||||| |||| ||||||||||||||| || ||||||||||
Sbjct: 763 aaagattttgtcaaggaaaatttgtggcctgaacttgtcccccagttgaagc 814



 Score = 44.1 bits (22), Expect = 0.44
 Identities = 43/50 (86%)
 Strand = Plus / Minus

                                                                
Query: 104    ctcctcgccgccaccctcagcgccgacaaaacgtccgtggacgccgccac 153
              |||||| |||||||||| ||| |||||||  || | ||||||||||||||
Sbjct: 129314 ctcctctccgccaccctgagccccgacaaggcggcggtggacgccgccac 129265
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>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11, complete
                sequence
          Length = 28386948

 Score = 75.8 bits (38), Expect = 1e-10
 Identities = 102/122 (83%), Gaps = 1/122 (0%)
 Strand = Plus / Minus

                                                                            
Query: 104      ctcctcgccgccaccctcagcgccgacaaaacgtccgtggacgccgccaccg-ctggttc 162
                |||||| |||||||||| ||| |||||||  || | |||||||||||||| |   || ||
Sbjct: 27845868 ctcctctccgccaccctgagccccgacaaggcggcggtggacgccgccacggaagggctc 27845809

                                                                            
Query: 163      gaccggatctccgcggccggcgacccccgcttccccatcgccctcctcgccgtcgccgca 222
                  | ||||| |||| |||  ||||||||||||||||||| ||||||||||||||||||||
Sbjct: 27845808 tccaggatcgccgccgcctccgacccccgcttccccatctccctcctcgccgtcgccgca 27845749

                  
Query: 223      gg 224
                ||
Sbjct: 27845748 gg 27845747



 Score = 75.8 bits (38), Expect = 1e-10
 Identities = 41/42 (97%)
 Strand = Plus / Plus

                                                          
Query: 183      cgacccccgcttccccatcgccctcctcgccgtcgccgcagg 224
                ||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 27716438 cgacccccgcttccccatctccctcctcgccgtcgccgcagg 27716479



 Score = 71.9 bits (36), Expect = 2e-09
 Identities = 48/52 (92%)
 Strand = Plus / Minus

                                                                    
Query: 415      aaagattttgtcaaggagaattcgtggcctgaacttgtgcctcagttgaagc 466
                ||||||||||||||||| |||| ||||||||||||||| || ||||||||||
Sbjct: 27844909 aaagattttgtcaaggaaaatttgtggcctgaacttgtcccccagttgaagc 27844858



 Score = 71.9 bits (36), Expect = 2e-09
 Identities = 48/52 (92%)
 Strand = Plus / Plus

                                                                    
Query: 415      aaagattttgtcaaggagaattcgtggcctgaacttgtgcctcagttgaagc 466
                ||||||||||||||||| |||| ||||||||||||||| || ||||||||||
Sbjct: 27717426 aaagattttgtcaaggaaaatttgtggcctgaacttgtcccccagttgaagc 27717477



 Score = 44.1 bits (22), Expect = 0.44
 Identities = 43/50 (86%)
 Strand = Plus / Plus

                                                                  
Query: 104      ctcctcgccgccaccctcagcgccgacaaaacgtccgtggacgccgccac 153
                |||||| |||||||||| ||| |||||||  || | ||||||||||||||
Sbjct: 27716358 ctcctctccgccaccctgagccccgacaaggcggcggtggacgccgccac 27716407



 Score = 42.1 bits (21), Expect = 1.7
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                         
Query: 197      ccatcgccctcctcgccgtcgccgc 221
                |||||||||||||| ||||||||||
Sbjct: 22477385 ccatcgccctcctctccgtcgccgc 22477409
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>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence
          Length = 28369397

 Score = 75.8 bits (38), Expect = 1e-10
 Identities = 102/122 (83%), Gaps = 1/122 (0%)
 Strand = Plus / Minus

                                                                            
Query: 104      ctcctcgccgccaccctcagcgccgacaaaacgtccgtggacgccgccaccg-ctggttc 162
                |||||| |||||||||| ||| |||||||  || | |||||||||||||| |   || ||
Sbjct: 27869856 ctcctctccgccaccctgagccccgacaaggcggcggtggacgccgccacggaagggctc 27869797

                                                                            
Query: 163      gaccggatctccgcggccggcgacccccgcttccccatcgccctcctcgccgtcgccgca 222
                  | ||||| |||| |||  ||||||||||||||||||| ||||||||||||||||||||
Sbjct: 27869796 tccaggatcgccgccgcctccgacccccgcttccccatctccctcctcgccgtcgccgca 27869737

                  
Query: 223      gg 224
                ||
Sbjct: 27869736 gg 27869735



 Score = 75.8 bits (38), Expect = 1e-10
 Identities = 41/42 (97%)
 Strand = Plus / Plus

                                                          
Query: 183      cgacccccgcttccccatcgccctcctcgccgtcgccgcagg 224
                ||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 27740426 cgacccccgcttccccatctccctcctcgccgtcgccgcagg 27740467



 Score = 71.9 bits (36), Expect = 2e-09
 Identities = 48/52 (92%)
 Strand = Plus / Minus

                                                                    
Query: 415      aaagattttgtcaaggagaattcgtggcctgaacttgtgcctcagttgaagc 466
                ||||||||||||||||| |||| ||||||||||||||| || ||||||||||
Sbjct: 27868897 aaagattttgtcaaggaaaatttgtggcctgaacttgtcccccagttgaagc 27868846



 Score = 71.9 bits (36), Expect = 2e-09
 Identities = 48/52 (92%)
 Strand = Plus / Plus

                                                                    
Query: 415      aaagattttgtcaaggagaattcgtggcctgaacttgtgcctcagttgaagc 466
                ||||||||||||||||| |||| ||||||||||||||| || ||||||||||
Sbjct: 27741414 aaagattttgtcaaggaaaatttgtggcctgaacttgtcccccagttgaagc 27741465



 Score = 44.1 bits (22), Expect = 0.44
 Identities = 43/50 (86%)
 Strand = Plus / Plus

                                                                  
Query: 104      ctcctcgccgccaccctcagcgccgacaaaacgtccgtggacgccgccac 153
                |||||| |||||||||| ||| |||||||  || | ||||||||||||||
Sbjct: 27740346 ctcctctccgccaccctgagccccgacaaggcggcggtggacgccgccac 27740395



 Score = 42.1 bits (21), Expect = 1.7
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                         
Query: 197      ccatcgccctcctcgccgtcgccgc 221
                |||||||||||||| ||||||||||
Sbjct: 22787296 ccatcgccctcctctccgtcgccgc 22787320
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>ref|NM_187868.1| Oryza sativa (japonica cultivar-group), Ozsa8312 predicted mRNA
          Length = 1713

 Score = 46.1 bits (23), Expect = 0.11
 Identities = 23/23 (100%)
 Strand = Plus / Minus

                                  
Query: 97  ccggagcctcctcgccgccaccc 119
           |||||||||||||||||||||||
Sbjct: 675 ccggagcctcctcgccgccaccc 653
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>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
               sequence
          Length = 43261740

 Score = 46.1 bits (23), Expect = 0.11
 Identities = 23/23 (100%)
 Strand = Plus / Minus

                                      
Query: 97      ccggagcctcctcgccgccaccc 119
               |||||||||||||||||||||||
Sbjct: 8347567 ccggagcctcctcgccgccaccc 8347545



 Score = 40.1 bits (20), Expect = 6.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                    
Query: 200      tcgccctcctcgccgtcgcc 219
                ||||||||||||||||||||
Sbjct: 40214424 tcgccctcctcgccgtcgcc 40214443



 Score = 40.1 bits (20), Expect = 6.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                    
Query: 200      tcgccctcctcgccgtcgcc 219
                ||||||||||||||||||||
Sbjct: 25593597 tcgccctcctcgccgtcgcc 25593578



 Score = 40.1 bits (20), Expect = 6.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                    
Query: 200      tcgccctcctcgccgtcgcc 219
                ||||||||||||||||||||
Sbjct: 23461169 tcgccctcctcgccgtcgcc 23461150
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>dbj|AP001278.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1,
              clone:P0434D08
          Length = 161266

 Score = 46.1 bits (23), Expect = 0.11
 Identities = 23/23 (100%)
 Strand = Plus / Minus

                                     
Query: 97     ccggagcctcctcgccgccaccc 119
              |||||||||||||||||||||||
Sbjct: 141498 ccggagcctcctcgccgccaccc 141476
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>dbj|AP000816.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1,
             clone:P0503G09
          Length = 59843

 Score = 46.1 bits (23), Expect = 0.11
 Identities = 23/23 (100%)
 Strand = Plus / Minus

                                    
Query: 97    ccggagcctcctcgccgccaccc 119
             |||||||||||||||||||||||
Sbjct: 12193 ccggagcctcctcgccgccaccc 12171
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>ref|XM_479592.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 546

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 201 cgccctcctcgccgtcgccgc 221
           |||||||||||||||||||||
Sbjct: 51  cgccctcctcgccgtcgccgc 71
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>gb|AC121328.3| Oryza sativa (japonica cultivar-group) chromosome 11 BAC clone
             OSJNBb0030E22, complete sequence
          Length = 135468

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                      
Query: 197   ccatcgccctcctcgccgtcgccgc 221
             |||||||||||||| ||||||||||
Sbjct: 34530 ccatcgccctcctctccgtcgccgc 34554
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>gb|AC104448.2| Homo sapiens chromosome 3 clone RP11-24C3, complete sequence
          Length = 155470

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                      
Query: 203   ccctcctcgccgtcgccgcagggga 227
             ||||||||||||||||||| |||||
Sbjct: 88414 ccctcctcgccgtcgccgcggggga 88390
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>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete
                sequence
          Length = 29644043

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                     
Query: 201      cgccctcctcgccgtcgccgc 221
                |||||||||||||||||||||
Sbjct: 29099757 cgccctcctcgccgtcgccgc 29099737
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>dbj|AP003813.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC
             clone:OJ1150_E04
          Length = 130973

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 201   cgccctcctcgccgtcgccgc 221
             |||||||||||||||||||||
Sbjct: 34875 cgccctcctcgccgtcgccgc 34855
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>dbj|AP003818.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC
             clone:OJ1200_C08
          Length = 106214

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 201   cgccctcctcgccgtcgccgc 221
             |||||||||||||||||||||
Sbjct: 47714 cgccctcctcgccgtcgccgc 47694
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>dbj|AK062636.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-105-D02, full
           insert sequence
          Length = 890

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 201 cgccctcctcgccgtcgccgc 221
           |||||||||||||||||||||
Sbjct: 100 cgccctcctcgccgtcgccgc 120
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>gb|AC134772.2| Homo sapiens chromosome 3 clone RP13-794C1, complete sequence
          Length = 177231

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                      
Query: 203   ccctcctcgccgtcgccgcagggga 227
             ||||||||||||||||||| |||||
Sbjct: 42712 ccctcctcgccgtcgccgccgggga 42688
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>ref|XM_480820.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 697

 Score = 40.1 bits (20), Expect = 6.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 195 ccccatcgccctcctcgccg 214
           ||||||||||||||||||||
Sbjct: 184 ccccatcgccctcctcgccg 165
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>ref|NM_192244.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 1476

 Score = 40.1 bits (20), Expect = 6.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 200  tcgccctcctcgccgtcgcc 219
            ||||||||||||||||||||
Sbjct: 1343 tcgccctcctcgccgtcgcc 1324
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>gb|CP000067.1| Trypanosoma brucei chromosome 4, complete sequence
          Length = 1590432

 Score = 40.1 bits (20), Expect = 6.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 17     caaagaacttcctagggttt 36
              ||||||||||||||||||||
Sbjct: 242806 caaagaacttcctagggttt 242787
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>gb|AC103580.4| Trypanosoma brucei chromosome 4 clone RPCI93-5E12, complete sequence
          Length = 174832

 Score = 40.1 bits (20), Expect = 6.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 17    caaagaacttcctagggttt 36
             ||||||||||||||||||||
Sbjct: 89089 caaagaacttcctagggttt 89108
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>gb|AC115937.14| Mus musculus chromosome 5, clone RP24-547J21, complete sequence
          Length = 215400

 Score = 40.1 bits (20), Expect = 6.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 284   gcaacatggaaggggggctc 303
             ||||||||||||||||||||
Sbjct: 21132 gcaacatggaaggggggctc 21151
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>gb|AE000516.2| Mycobacterium tuberculosis CDC1551, complete genome
          Length = 4403837

 Score = 40.1 bits (20), Expect = 6.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 168     gatctccgcggccggcgacc 187
               ||||||||||||||||||||
Sbjct: 1024066 gatctccgcggccggcgacc 1024085
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>gb|AE017283.1| Propionibacterium acnes KPA171202, complete genome
          Length = 2560265

 Score = 40.1 bits (20), Expect = 6.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 125     gccgacaaaacgtccgtgga 144
               ||||||||||||||||||||
Sbjct: 2241288 gccgacaaaacgtccgtgga 2241269
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>ref|XM_821735.1| Trypanosoma brucei TREU927 clone RPCI93-5E12 dynein heavy chain
            (Tb927.4.870) partial mRNA
          Length = 13347

 Score = 40.1 bits (20), Expect = 6.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 17   caaagaacttcctagggttt 36
            ||||||||||||||||||||
Sbjct: 8879 caaagaacttcctagggttt 8898
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>gb|AY459338.1| Oryza sativa (japonica cultivar-group) clone CL029396.2 R2R3-MYB gene
            region
          Length = 16710

 Score = 40.1 bits (20), Expect = 6.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 200  tcgccctcctcgccgtcgcc 219
            ||||||||||||||||||||
Sbjct: 5172 tcgccctcctcgccgtcgcc 5191
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>gb|AC125183.4| Mus musculus BAC clone RP23-297M4 from 5, complete sequence
          Length = 221622

 Score = 40.1 bits (20), Expect = 6.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 284   gcaacatggaaggggggctc 303
             ||||||||||||||||||||
Sbjct: 53539 gcaacatggaaggggggctc 53520
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>gb|CP000300.1| Methanococcoides burtonii DSM 6242, complete genome
          Length = 2575032

 Score = 40.1 bits (20), Expect = 6.8
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 410    cggagaaagattttgtcaaggaga 433
              ||||||||||| ||||||||||||
Sbjct: 898460 cggagaaagatattgtcaaggaga 898483
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>emb|AL353588.25| Human DNA sequence from clone RP11-444E17 on chromosome 6 Contains the
             gene for a novel protein (possible ortholog of mouse
             TCTE1), the gene for novel protein (KIAA1270), a novel
             gene, the 5' end of a novel gene (possible ortholog of
             rodent CDC5-like protein), the 3' part of a novel gene and
             three CpG islands, complete sequence
          Length = 145947

 Score = 40.1 bits (20), Expect = 6.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 461   tgaagctgtgatccagacag 480
             ||||||||||||||||||||
Sbjct: 15374 tgaagctgtgatccagacag 15355
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>emb|BX842574.1| Mycobacterium tuberculosis H37Rv complete genome; segment 3/13
          Length = 349564

 Score = 40.1 bits (20), Expect = 6.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 168    gatctccgcggccggcgacc 187
              ||||||||||||||||||||
Sbjct: 339780 gatctccgcggccggcgacc 339799
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>emb|BX248337.1| Mycobacterium bovis subsp. bovis AF2122/97 complete genome; segment
             4/14
          Length = 327650

 Score = 40.1 bits (20), Expect = 6.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 168   gatctccgcggccggcgacc 187
             ||||||||||||||||||||
Sbjct: 37519 gatctccgcggccggcgacc 37538
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>emb|AL627094.2| Zebrafish DNA sequence from clone RP71-PACKTRZ in linkage group 7
             Contains a novel gene similar to PKD2L1 (polycystic kidney
             disease 2-like 1), the atoh7 gene for atonal homolog 7, a
             putative novel gene and two novel genes, complete sequence
          Length = 49116

 Score = 40.1 bits (20), Expect = 6.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 464   agctgtgatccagacagcga 483
             ||||||||||||||||||||
Sbjct: 42579 agctgtgatccagacagcga 42560
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>emb|BX530079.19| Zebrafish DNA sequence from clone DKEY-51A16 in linkage group 13,
             complete sequence
          Length = 166397

 Score = 40.1 bits (20), Expect = 6.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 464   agctgtgatccagacagcga 483
             ||||||||||||||||||||
Sbjct: 88762 agctgtgatccagacagcga 88743
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>dbj|AP003707.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC
             clone:OJ1485_B09
          Length = 66599

 Score = 40.1 bits (20), Expect = 6.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 200   tcgccctcctcgccgtcgcc 219
             ||||||||||||||||||||
Sbjct: 13376 tcgccctcctcgccgtcgcc 13395
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>ref|NM_001013520.1| Danio rerio cadherin 6 (cdh6), mRNA
          Length = 4275

 Score = 40.1 bits (20), Expect = 6.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 103  cctcctcgccgccaccctca 122
            ||||||||||||||||||||
Sbjct: 2235 cctcctcgccgccaccctca 2216
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>gb|U82619.2|SFU82619 Shigella flexneri bacteriophage V, complete genome
          Length = 37074

 Score = 40.1 bits (20), Expect = 6.8
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 214   gtcgccgcaggggatggtgatcaa 237
             |||||||| |||||||||||||||
Sbjct: 11201 gtcgccgctggggatggtgatcaa 11224
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>gb|AC175674.2| Gallus gallus BAC clone CH261-137E22 from chromosome ul, complete
              sequence
          Length = 216348

 Score = 40.1 bits (20), Expect = 6.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 337    cagcttgctcaggctctgct 356
              ||||||||||||||||||||
Sbjct: 143379 cagcttgctcaggctctgct 143360
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>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, complete
               sequence
          Length = 28434780

 Score = 40.1 bits (20), Expect = 6.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 195     ccccatcgccctcctcgccg 214
               ||||||||||||||||||||
Sbjct: 7966622 ccccatcgccctcctcgccg 7966603
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>gb|AC007881.4| Homo sapiens BAC clone RP11-467P9 from 2, complete sequence
          Length = 171247

 Score = 40.1 bits (20), Expect = 6.8
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 344    ctcaggctctgcttcgagtggaac 367
              ||||||||||||||| ||||||||
Sbjct: 136498 ctcaggctctgcttctagtggaac 136521
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>dbj|AP006843.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC
             clone:B1793G04
          Length = 156714

 Score = 40.1 bits (20), Expect = 6.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 200   tcgccctcctcgccgtcgcc 219
             ||||||||||||||||||||
Sbjct: 80202 tcgccctcctcgccgtcgcc 80221
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>dbj|BA000030.2| Streptomyces avermitilis MA-4680 genomic DNA, complete genome
          Length = 9025608

 Score = 40.1 bits (20), Expect = 6.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 108     tcgccgccaccctcagcgcc 127
               ||||||||||||||||||||
Sbjct: 5832567 tcgccgccaccctcagcgcc 5832586
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>gb|BC090908.1| Danio rerio cadherin 6, mRNA (cDNA clone MGC:103673 IMAGE:7256976),
            complete cds
          Length = 3274

 Score = 40.1 bits (20), Expect = 6.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 103  cctcctcgccgccaccctca 122
            ||||||||||||||||||||
Sbjct: 2193 cctcctcgccgccaccctca 2174
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>dbj|AP004559.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, PAC
             clone:P0461A06
          Length = 136384

 Score = 40.1 bits (20), Expect = 6.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 195   ccccatcgccctcctcgccg 214
             ||||||||||||||||||||
Sbjct: 38792 ccccatcgccctcctcgccg 38773
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>dbj|AP003607.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
             clone:P0004A09
          Length = 158826

 Score = 40.1 bits (20), Expect = 6.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 200   tcgccctcctcgccgtcgcc 219
             ||||||||||||||||||||
Sbjct: 40403 tcgccctcctcgccgtcgcc 40384
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>dbj|AP004367.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
              clone:P0696E01
          Length = 194056

 Score = 40.1 bits (20), Expect = 6.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 200    tcgccctcctcgccgtcgcc 219
              ||||||||||||||||||||
Sbjct: 121200 tcgccctcctcgccgtcgcc 121181
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>dbj|AB193290.1| Danio rerio cdh6 mRNA for cadherin 6, complete cds
          Length = 4275

 Score = 40.1 bits (20), Expect = 6.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 103  cctcctcgccgccaccctca 122
            ||||||||||||||||||||
Sbjct: 2235 cctcctcgccgccaccctca 2216
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>dbj|AP003504.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
             clone:P0025A05
          Length = 154298

 Score = 40.1 bits (20), Expect = 6.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 200   tcgccctcctcgccgtcgcc 219
             ||||||||||||||||||||
Sbjct: 24474 tcgccctcctcgccgtcgcc 24455
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>dbj|AP006165.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC
            clone:B1425D05, complete sequence
          Length = 66450

 Score = 40.1 bits (20), Expect = 6.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 200  tcgccctcctcgccgtcgcc 219
            ||||||||||||||||||||
Sbjct: 5774 tcgccctcctcgccgtcgcc 5793
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>gb|AE004992.1| Halobacterium sp. NRC-1 section 23 of 170 of the complete genome
          Length = 16488

 Score = 40.1 bits (20), Expect = 6.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 170  tctccgcggccggcgacccc 189
            ||||||||||||||||||||
Sbjct: 7611 tctccgcggccggcgacccc 7630
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>dbj|AK111371.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-182-A06, full
           insert sequence
          Length = 697

 Score = 40.1 bits (20), Expect = 6.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 195 ccccatcgccctcctcgccg 214
           ||||||||||||||||||||
Sbjct: 184 ccccatcgccctcctcgccg 165
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>dbj|AK103824.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033147K24, full
            insert sequence
          Length = 1896

 Score = 40.1 bits (20), Expect = 6.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 200  tcgccctcctcgccgtcgcc 219
            ||||||||||||||||||||
Sbjct: 1440 tcgccctcctcgccgtcgcc 1421
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>dbj|AK101659.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033057I21, full
            insert sequence
          Length = 1896

 Score = 40.1 bits (20), Expect = 6.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 200  tcgccctcctcgccgtcgcc 219
            ||||||||||||||||||||
Sbjct: 1440 tcgccctcctcgccgtcgcc 1421
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>gb|AE015451.1| Pseudomonas putida KT2440 complete genome
          Length = 6181863

 Score = 40.1 bits (20), Expect = 6.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 337     cagcttgctcaggctctgct 356
               ||||||||||||||||||||
Sbjct: 5708487 cagcttgctcaggctctgct 5708468
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>gb|AE017221.1| Thermus thermophilus HB27, complete genome
          Length = 1894877

 Score = 40.1 bits (20), Expect = 6.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 103     cctcctcgccgccaccctca 122
               ||||||||||||||||||||
Sbjct: 1751706 cctcctcgccgccaccctca 1751725


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 3,368,091
Number of Sequences: 3902068
Number of extensions: 3368091
Number of successful extensions: 71808
Number of sequences better than 10.0: 54
Number of HSP's better than 10.0 without gapping: 59
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 70800
Number of HSP's gapped (non-prelim): 1007
length of query: 504
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 482
effective length of database: 17,147,199,772
effective search space: 8264950290104
effective search space used: 8264950290104
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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