ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name bastl31h02
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1dbj|AP007154.1| Aspergillus oryzae RIB40 genomic DNA, SC001 40 0.52
2gb|CP000031.1| Silicibacter pomeroyi DSS-3, complete genome 38 2.1
3emb|BX640416.1| Bordetella pertussis strain Tohama I, complete g... 38 2.1
4gb|S55763.1| cephamycin gene cluster: cefD=isopenicillin N epime... 38 2.1
5dbj|BS000242.1| Pan troglodytes chromosome 22 clone:PTB-120M01, ... 38 2.1
6dbj|BS000241.1| Pan troglodytes chromosome 22 clone:PTB-110J21, ... 38 2.1
7emb|Z13984.1|NLCEFD N.lactamdurans cefD gene 38 2.1
8dbj|AP000051.1| Homo sapiens genomic DNA, chromosome 21q22.1, se... 36 8.2
9dbj|BA000030.2| Streptomyces avermitilis MA-4680 genomic DNA, co... 36 8.2
10dbj|BA000045.2| Gloeobacter violaceus PCC 7421 DNA, complete genome 36 8.2
11dbj|BS000188.1| Pan troglodytes chromosome 22 clone:RP43-084B17,... 36 8.2
12dbj|AP000317.2| Homo sapiens genomic DNA, chromosome 21 clone:RP... 36 8.2
13dbj|AP001719.1| Homo sapiens genomic DNA, chromosome 21q, sectio... 36 8.2
14gb|CP000086.1| Burkholderia thailandensis E264 chromosome I, com... 36 8.2
15gb|AE000513.1| Deinococcus radiodurans R1 chromosome 1, complete... 36 8.2
16dbj|AP000166.1| Homo sapiens genomic DNA, chromosome 21q22.1, D2... 36 8.2

>dbj|AP007154.1| Aspergillus oryzae RIB40 genomic DNA, SC001
          Length = 2005935

 Score = 40.1 bits (20), Expect = 0.52
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                       
Query: 9       cctgcccgcccaccgagaaaggaa 32
               |||||||| |||||||||||||||
Sbjct: 1245096 cctgcccgtccaccgagaaaggaa 1245119



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>gb|CP000031.1| Silicibacter pomeroyi DSS-3, complete genome
          Length = 4109442

 Score = 38.2 bits (19), Expect = 2.1
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                  
Query: 34      gcggtcaatctggtggcct 52
               |||||||||||||||||||
Sbjct: 2495097 gcggtcaatctggtggcct 2495079



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>emb|BX640416.1| Bordetella pertussis strain Tohama I, complete genome; segment 6/12
          Length = 349354

 Score = 38.2 bits (19), Expect = 2.1
 Identities = 22/23 (95%)
 Strand = Plus / Plus

                                    
Query: 33    cgcggtcaatctggtggcctcgt 55
             ||||||||| |||||||||||||
Sbjct: 45592 cgcggtcaacctggtggcctcgt 45614



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>gb|S55763.1| cephamycin gene cluster: cefD=isopenicillin N epimerase,
           cefE=deacetoxycephalosporin C synthase [Nocardia
           lactamdurans, Genomic, 2169 nt]
          Length = 2169

 Score = 38.2 bits (19), Expect = 2.1
 Identities = 22/23 (95%)
 Strand = Plus / Plus

                                  
Query: 33  cgcggtcaatctggtggcctcgt 55
           ||||||||| |||||||||||||
Sbjct: 289 cgcggtcaacctggtggcctcgt 311



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>dbj|BS000242.1| Pan troglodytes chromosome 22 clone:PTB-120M01, map 22, complete
             sequences
          Length = 224098

 Score = 38.2 bits (19), Expect = 2.1
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 7     gccctgcccgcccaccgag 25
             |||||||||||||||||||
Sbjct: 11614 gccctgcccgcccaccgag 11632



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>dbj|BS000241.1| Pan troglodytes chromosome 22 clone:PTB-110J21, map 22, complete
             sequences
          Length = 102671

 Score = 38.2 bits (19), Expect = 2.1
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 7     gccctgcccgcccaccgag 25
             |||||||||||||||||||
Sbjct: 48356 gccctgcccgcccaccgag 48374



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>emb|Z13984.1|NLCEFD N.lactamdurans cefD gene
          Length = 1197

 Score = 38.2 bits (19), Expect = 2.1
 Identities = 22/23 (95%)
 Strand = Plus / Plus

                                  
Query: 33  cgcggtcaatctggtggcctcgt 55
           ||||||||| |||||||||||||
Sbjct: 258 cgcggtcaacctggtggcctcgt 280



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>dbj|AP000051.1| Homo sapiens genomic DNA, chromosome 21q22.1, segment 22/28, complete
             sequence
          Length = 100000

 Score = 36.2 bits (18), Expect = 8.2
 Identities = 18/18 (100%)
 Strand = Plus / Minus

                               
Query: 36    ggtcaatctggtggcctc 53
             ||||||||||||||||||
Sbjct: 67682 ggtcaatctggtggcctc 67665



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>dbj|BA000030.2| Streptomyces avermitilis MA-4680 genomic DNA, complete genome
          Length = 9025608

 Score = 36.2 bits (18), Expect = 8.2
 Identities = 18/18 (100%)
 Strand = Plus / Plus

                                
Query: 41     atctggtggcctcgtgct 58
              ||||||||||||||||||
Sbjct: 122631 atctggtggcctcgtgct 122648



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>dbj|BA000045.2| Gloeobacter violaceus PCC 7421 DNA, complete genome
          Length = 4659019

 Score = 36.2 bits (18), Expect = 8.2
 Identities = 18/18 (100%)
 Strand = Plus / Plus

                                 
Query: 8       ccctgcccgcccaccgag 25
               ||||||||||||||||||
Sbjct: 1623546 ccctgcccgcccaccgag 1623563



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>dbj|BS000188.1| Pan troglodytes chromosome 22 clone:RP43-084B17, map 22, complete
             sequences
          Length = 170687

 Score = 36.2 bits (18), Expect = 8.2
 Identities = 18/18 (100%)
 Strand = Plus / Minus

                               
Query: 36    ggtcaatctggtggcctc 53
             ||||||||||||||||||
Sbjct: 49890 ggtcaatctggtggcctc 49873



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>dbj|AP000317.2| Homo sapiens genomic DNA, chromosome 21 clone:RP1-24517, complete
             sequence
          Length = 97831

 Score = 36.2 bits (18), Expect = 8.2
 Identities = 18/18 (100%)
 Strand = Plus / Minus

                               
Query: 36    ggtcaatctggtggcctc 53
             ||||||||||||||||||
Sbjct: 67682 ggtcaatctggtggcctc 67665



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>dbj|AP001719.1| Homo sapiens genomic DNA, chromosome 21q, section 63/105
          Length = 340000

 Score = 36.2 bits (18), Expect = 8.2
 Identities = 18/18 (100%)
 Strand = Plus / Minus

                                
Query: 36     ggtcaatctggtggcctc 53
              ||||||||||||||||||
Sbjct: 188891 ggtcaatctggtggcctc 188874



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>gb|CP000086.1| Burkholderia thailandensis E264 chromosome I, complete sequence
          Length = 3809201

 Score = 36.2 bits (18), Expect = 8.2
 Identities = 18/18 (100%)
 Strand = Plus / Minus

                                
Query: 7      gccctgcccgcccaccga 24
              ||||||||||||||||||
Sbjct: 239071 gccctgcccgcccaccga 239054



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>gb|AE000513.1| Deinococcus radiodurans R1 chromosome 1, complete sequence
          Length = 2648638

 Score = 36.2 bits (18), Expect = 8.2
 Identities = 18/18 (100%)
 Strand = Plus / Plus

                                 
Query: 7       gccctgcccgcccaccga 24
               ||||||||||||||||||
Sbjct: 2448048 gccctgcccgcccaccga 2448065



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>dbj|AP000166.1| Homo sapiens genomic DNA, chromosome 21q22.1, D21S226-AML region, clone
             B2344F14-f50E8, segment 2/9, complete sequence
          Length = 100000

 Score = 36.2 bits (18), Expect = 8.2
 Identities = 18/18 (100%)
 Strand = Plus / Minus

                               
Query: 36    ggtcaatctggtggcctc 53
             ||||||||||||||||||
Sbjct: 59650 ggtcaatctggtggcctc 59633


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 271,601
Number of Sequences: 3902068
Number of extensions: 271601
Number of successful extensions: 18954
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 16
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 18804
Number of HSP's gapped (non-prelim): 150
length of query: 58
length of database: 17,233,045,268
effective HSP length: 21
effective length of query: 37
effective length of database: 17,151,101,840
effective search space: 634590768080
effective search space used: 634590768080
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 18 (36.2 bits)
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