ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bastl31h01 |
|---|---|
| Clone Library Name | barley_pub |
>KKCC1_RAT (P97756) Calcium/calmodulin-dependent protein kinase kinase 1 (EC| 2.7.11.17) (Calcium/calmodulin-dependent protein kinase kinase alpha) (CaM-kinase kinase alpha) (CaM-KK alpha) (CaMKK alpha) (alpha CaMKK) (CaMKK 1) (CaM-kinase IV kinase) Length = 505 Score = 31.2 bits (69), Expect = 0.72 Identities = 21/69 (30%), Positives = 29/69 (42%) Frame = +2 Query: 59 PRSRARNISPCPASRPDPFRPRRAILTLLICADEGGELLSTVMPPMELLGRSFLQAAGSA 238 PR+RA ++ P ASRP P RP + + G L + P + G A Sbjct: 46 PRARAASVIPGSASRPTPVRPSLSARKFSLQERPAGSCLEAQVGP---------YSTGPA 96 Query: 239 STAAPRGGR 265 S +PR R Sbjct: 97 SHMSPRAWR 105
>KKCC1_MOUSE (Q8VBY2) Calcium/calmodulin-dependent protein kinase kinase 1 (EC| 2.7.11.17) (Calcium/calmodulin-dependent protein kinase kinase alpha) (CaM-kinase kinase alpha) (CaM-KK alpha) (CaMKK alpha) (CaMKK 1) (CaM-kinase IV kinase) Length = 505 Score = 31.2 bits (69), Expect = 0.72 Identities = 21/69 (30%), Positives = 29/69 (42%) Frame = +2 Query: 59 PRSRARNISPCPASRPDPFRPRRAILTLLICADEGGELLSTVMPPMELLGRSFLQAAGSA 238 PR+RA ++ P ASRP P RP + + G L + P + G A Sbjct: 46 PRARAASVIPGSASRPTPVRPSLSARKFSLQERPAGSCLGAQVGP---------YSTGPA 96 Query: 239 STAAPRGGR 265 S +PR R Sbjct: 97 SHISPRSWR 105
>SURE_HAEDU (Q7VN28) 5'-nucleotidase surE (EC 3.1.3.5) (Nucleoside| 5'-monophosphate phosphohydrolase) Length = 253 Score = 31.2 bits (69), Expect = 0.72 Identities = 27/70 (38%), Positives = 34/70 (48%), Gaps = 7/70 (10%) Frame = -2 Query: 213 DLPSSSIGGMTVERSSPPS-SAQISKVKIARR------GRNGSGRLAGQGDMFLALDLGR 55 DLP S+I GM V R S SA+I K + R G NGS G+G F AL Sbjct: 171 DLPYSAIKGMLVTRLGQRSPSAEILKSQDPRGSTIYWLGENGSAIDNGEGTDFYALAHDY 230 Query: 54 LDRTPVAAPL 25 + TP+ A + Sbjct: 231 VSITPIHADM 240
>SLD3_SCHPO (Q09761) DNA replication regulator sld3| Length = 668 Score = 31.2 bits (69), Expect = 0.72 Identities = 21/56 (37%), Positives = 30/56 (53%), Gaps = 1/56 (1%) Frame = -2 Query: 267 SRPPRGAAVLAEPAACKKDLPSSSIGGMTVERSSPPSSAQISK-VKIARRGRNGSG 103 S PPR + ++ A + LP ++ G SSP S A ISK +I +R R+ SG Sbjct: 436 SAPPRSKLISSKSEAGRA-LPGNTSGASISNTSSPHSEASISKDYEILKRRRSNSG 490
>NIR_SYNP7 (P39661) Ferredoxin--nitrite reductase (EC 1.7.7.1)| Length = 512 Score = 30.4 bits (67), Expect = 1.2 Identities = 11/29 (37%), Positives = 17/29 (58%) Frame = +1 Query: 1 GERQHKRKQGGCYWCPVQPSKIQSEKHIP 87 G+R+H+ K G +W PV P + + IP Sbjct: 44 GDREHRLKWLGIFWRPVTPGRFMARLRIP 72
>H1C2_XENLA (P15867) Histone H1C (Clone XLHW8)| Length = 220 Score = 29.3 bits (64), Expect = 2.7 Identities = 16/52 (30%), Positives = 25/52 (48%) Frame = -2 Query: 249 AAVLAEPAACKKDLPSSSIGGMTVERSSPPSSAQISKVKIARRGRNGSGRLA 94 AA AEP KK P + GG ++ S PS++++ ++ G LA Sbjct: 11 AAPPAEPKQKKKQQPKKAAGGAKAKKPSGPSASELIVKSVSASKERGGVSLA 62
>TRIO_HUMAN (O75962) Triple functional domain protein (PTPRF-interacting protein)| Length = 3038 Score = 28.5 bits (62), Expect = 4.7 Identities = 30/91 (32%), Positives = 39/91 (42%), Gaps = 8/91 (8%) Frame = -2 Query: 267 SRPPRGAAVLAEPAACKKDLPSSSIGGMTVERSSPPSSAQISKVKIARRGRNGSGRLAGQ 88 S PP GAA A P+A + P + G ER + P I K+K+ R G+ +G Sbjct: 2316 SLPPPGAAPEAGPSAPSRRPPGADAEGS--EREAEP----IPKMKVLESPRKGAANASGS 2369 Query: 87 GDMFLALD----LGRL----DRTPVAAPLFS 19 A D LG L R A+PL S Sbjct: 2370 SPDAPAKDARASLGTLPLGKPRAGAASPLNS 2400
>PER_DROSC (P91705) Period circadian protein (Fragment)| Length = 375 Score = 28.5 bits (62), Expect = 4.7 Identities = 16/46 (34%), Positives = 24/46 (52%) Frame = -2 Query: 216 KDLPSSSIGGMTVERSSPPSSAQISKVKIARRGRNGSGRLAGQGDM 79 K L + + GGM SSA +SK + + G GSG + G G++ Sbjct: 194 KQLLTLNTGGMPPLLDIHTSSASLSKCQASGAGGGGSGSVGGTGNI 239
>PER_DROCP (P91607) Period circadian protein (Fragment)| Length = 375 Score = 28.5 bits (62), Expect = 4.7 Identities = 16/46 (34%), Positives = 24/46 (52%) Frame = -2 Query: 216 KDLPSSSIGGMTVERSSPPSSAQISKVKIARRGRNGSGRLAGQGDM 79 K L + + GGM SSA +SK + + G GSG + G G++ Sbjct: 194 KQLLTLNTGGMPPLLDIHTSSASLSKCQASGAGGGGSGSVGGTGNI 239
>DCBD2_MOUSE (Q91ZV3) Discoidin, CUB and LCCL domain-containing protein 2| precursor (Endothelial and smooth muscle cell-derived neuropilin-like protein) Length = 769 Score = 28.5 bits (62), Expect = 4.7 Identities = 15/47 (31%), Positives = 20/47 (42%) Frame = +2 Query: 29 GAATGVRSNRPRSRARNISPCPASRPDPFRPRRAILTLLICADEGGE 169 G A + R + P P R RPR +L LL+ D GG+ Sbjct: 18 GPAAPAATGRAALPSAGCCPLPPGRNSSSRPRLLLLLLLLLQDAGGQ 64
>PSIP1_RAT (Q812D1) PC4 and SFRS1-interacting protein (Lens epithelium-derived| growth factor) Length = 528 Score = 28.1 bits (61), Expect = 6.1 Identities = 14/32 (43%), Positives = 19/32 (59%), Gaps = 1/32 (3%) Frame = +2 Query: 5 KGSTKENRGAATGVRSNRPRSRARNI-SPCPA 97 K S K R AAT V+ +PR R + + PCP+ Sbjct: 174 KASPKRGRPAATEVKIPKPRGRPKVVKQPCPS 205
>PSIP1_MOUSE (Q99JF8) PC4 and SFRS1-interacting protein (Lens epithelium-derived| growth factor) Length = 528 Score = 28.1 bits (61), Expect = 6.1 Identities = 14/32 (43%), Positives = 19/32 (59%), Gaps = 1/32 (3%) Frame = +2 Query: 5 KGSTKENRGAATGVRSNRPRSRARNI-SPCPA 97 K S K R AAT V+ +PR R + + PCP+ Sbjct: 174 KASPKRGRPAATEVKIPKPRGRPKVVKQPCPS 205
>RL19_CARHZ (Q3AC74) 50S ribosomal protein L19| Length = 113 Score = 28.1 bits (61), Expect = 6.1 Identities = 13/31 (41%), Positives = 20/31 (64%) Frame = -2 Query: 189 GMTVERSSPPSSAQISKVKIARRGRNGSGRL 97 G+ VER+ P S +I K+++ RRG+ RL Sbjct: 66 GIGVERTFPLHSPRIEKIEVIRRGKVRRARL 96
>TCP10_HUMAN (Q12799) T-complex protein 10A homolog| Length = 416 Score = 27.7 bits (60), Expect = 8.0 Identities = 22/76 (28%), Positives = 31/76 (40%), Gaps = 5/76 (6%) Frame = +2 Query: 47 RSNRPRSRARNISPCPASRPDPFRPRRAILTLLICADEGGELLSTVMPPMELLGRSFLQA 226 R P R ++ SP P RP P RR + +++G + + P GR Sbjct: 186 REKSPPGRRQDRSPAPTGRPTPGAERRGV------SEDGKIMHPSSRSPQNSGGRKSPVQ 239 Query: 227 AGSAS-----TAAPRG 259 A A+ TAA RG Sbjct: 240 ASQATTLQEQTAAARG 255
>UBP36_HUMAN (Q9P275) Ubiquitin carboxyl-terminal hydrolase 36 (EC 3.1.2.15)| (Ubiquitin thioesterase 36) (Ubiquitin-specific-processing protease 36) (Deubiquitinating enzyme 36) Length = 1121 Score = 27.7 bits (60), Expect = 8.0 Identities = 25/74 (33%), Positives = 31/74 (41%), Gaps = 3/74 (4%) Frame = +2 Query: 44 VRSNRPRSRARNISPCPASR---PDPFRPRRAILTLLICADEGGELLSTVMPPMELLGRS 214 V S P RAR +SP P S PF P +L+ ST PP G S Sbjct: 729 VASTWPVHRARAVSPAPQSSSRLQPPFSPHPTLLS------------STPKPP----GTS 772 Query: 215 FLQAAGSASTAAPR 256 ++ S STA P+ Sbjct: 773 EPRSCSSISTALPQ 786
>GDF1_MOUSE (P20863) Embryonic growth/differentiation factor 1 precursor| (GDF-1) Length = 357 Score = 27.7 bits (60), Expect = 8.0 Identities = 30/95 (31%), Positives = 36/95 (37%), Gaps = 27/95 (28%) Frame = +2 Query: 50 SNRPRSRARNISPCPA-------SRPDPF-RPRRAILTLLI---CADEGG---------- 166 S+RP AR CP S +P RP RA L L + C D GG Sbjct: 101 SSRPAQPARTSGLCPEWTVVFDLSNVEPTERPTRARLELRLEAECEDTGGWELSVALWAD 160 Query: 167 ------ELLSTVMPPMELLGRSFLQAAGSASTAAP 253 ELL PP LL L A +A+ + P Sbjct: 161 AEHPGPELLRVPAPPGVLLRADLLGTAVAANASVP 195
>SURE_VIBPA (Q87LQ5) 5'-nucleotidase surE (EC 3.1.3.5) (Nucleoside| 5'-monophosphate phosphohydrolase) Length = 258 Score = 27.7 bits (60), Expect = 8.0 Identities = 21/70 (30%), Positives = 32/70 (45%), Gaps = 7/70 (10%) Frame = -2 Query: 213 DLPSSSIGGMTVERSSPPSSAQISKVKIARRGRN-------GSGRLAGQGDMFLALDLGR 55 DLP S+G + V R A+ + RG + G + AG+G F A++ GR Sbjct: 172 DLPLESLGEIEVTRLGARHHAENMIKQKDPRGHDIYWLGPPGKEQDAGEGTDFYAIEHGR 231 Query: 54 LDRTPVAAPL 25 + TP+ L Sbjct: 232 VSITPLQVDL 241
>UBP7_YEAST (P40453) Ubiquitin carboxyl-terminal hydrolase 7 (EC 3.1.2.15)| (Ubiquitin thioesterase 7) (Ubiquitin-specific-processing protease 7) (Deubiquitinating enzyme 7) Length = 1071 Score = 27.7 bits (60), Expect = 8.0 Identities = 11/28 (39%), Positives = 17/28 (60%) Frame = +3 Query: 39 LVSGPTVQDPERETYPPARPAALTHFVP 122 ++ P ++PER+T P RP+ L VP Sbjct: 215 VIPTPAFREPERKTSVPVRPSVLLEDVP 242
>5E5_RAT (Q63003) 5E5 antigen| Length = 825 Score = 27.7 bits (60), Expect = 8.0 Identities = 22/75 (29%), Positives = 31/75 (41%), Gaps = 1/75 (1%) Frame = +2 Query: 50 SNRPRSRARN-ISPCPASRPDPFRPRRAILTLLICADEGGELLSTVMPPMELLGRSFLQA 226 S RP R R ++P RP PF P+ L C D+G + P + +A Sbjct: 752 SRRPARRPRGELTP---QRPSPFAPQEEGLRAESCVDDG-----AIAPDTDTASGEVPEA 803 Query: 227 AGSASTAAPRGGRER 271 S S+ + GR R Sbjct: 804 GPSLSSTMCQMGRPR 818
>MSRA_STRP8 (Q8P272) Peptide methionine sulfoxide reductase msrA (EC 1.8.4.6)| (Protein-methionine-S-oxide reductase) (Peptide Met(O) reductase) Length = 169 Score = 27.7 bits (60), Expect = 8.0 Identities = 9/15 (60%), Positives = 12/15 (80%) Frame = +1 Query: 28 GGCYWCPVQPSKIQS 72 GGC+WC VQP + Q+ Sbjct: 8 GGCFWCMVQPFEEQA 22
>MSRA_STRP6 (Q5XDH1) Peptide methionine sulfoxide reductase msrA (EC 1.8.4.6)| (Protein-methionine-S-oxide reductase) (Peptide Met(O) reductase) Length = 169 Score = 27.7 bits (60), Expect = 8.0 Identities = 9/15 (60%), Positives = 12/15 (80%) Frame = +1 Query: 28 GGCYWCPVQPSKIQS 72 GGC+WC VQP + Q+ Sbjct: 8 GGCFWCMVQPFEEQA 22
>MSRA_STRP3 (Q8K8E4) Peptide methionine sulfoxide reductase msrA (EC 1.8.4.6)| (Protein-methionine-S-oxide reductase) (Peptide Met(O) reductase) Length = 169 Score = 27.7 bits (60), Expect = 8.0 Identities = 9/15 (60%), Positives = 12/15 (80%) Frame = +1 Query: 28 GGCYWCPVQPSKIQS 72 GGC+WC VQP + Q+ Sbjct: 8 GGCFWCMVQPFEEQA 22
>MSRA_STRP1 (Q9A149) Peptide methionine sulfoxide reductase msrA (EC 1.8.4.6)| (Protein-methionine-S-oxide reductase) (Peptide Met(O) reductase) Length = 169 Score = 27.7 bits (60), Expect = 8.0 Identities = 9/15 (60%), Positives = 12/15 (80%) Frame = +1 Query: 28 GGCYWCPVQPSKIQS 72 GGC+WC VQP + Q+ Sbjct: 8 GGCFWCMVQPFEEQA 22 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 43,292,045 Number of Sequences: 219361 Number of extensions: 834898 Number of successful extensions: 3585 Number of sequences better than 10.0: 23 Number of HSP's better than 10.0 without gapping: 3447 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 3583 length of database: 80,573,946 effective HSP length: 65 effective length of database: 66,315,481 effective search space used: 1591571544 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
