ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bastl31g08 |
|---|---|
| Clone Library Name | barley_pub |
>HIRA_DROME (O17468) HIRA protein homolog (dHIRA)| Length = 1047 Score = 33.1 bits (74), Expect = 0.31 Identities = 22/65 (33%), Positives = 31/65 (47%) Frame = -3 Query: 251 AAVSLSSSGSNARTSHEDAKEEGEMRAAASSPLTPMDAAPPCHTHQTHARCLLFPILSLS 72 A+ SLSSSGS++ TS + ++ S P +P T + C+ ILS S Sbjct: 943 ASSSLSSSGSSSSTSGSGSSSSSSSTSSLSVPQPAPSLSPEIQTLDSPTVCIDDEILSAS 1002 Query: 71 HSL*P 57 SL P Sbjct: 1003 SSLPP 1007
>PER1_MOUSE (O35973) Period circadian protein 1 (Circadian pacemaker protein| Rigui) (mPER) (M-Rigui) Length = 1291 Score = 32.7 bits (73), Expect = 0.41 Identities = 19/54 (35%), Positives = 27/54 (50%), Gaps = 5/54 (9%) Frame = -3 Query: 287 QGDGCG-----REAGEEAAVSLSSSGSNARTSHEDAKEEGEMRAAASSPLTPMD 141 +G GCG + GEEA + + GS +S + A EE E +SSP P + Sbjct: 1236 EGGGCGVGGGGGDGGEEAQTQIGAKGS---SSQDSAMEEEEQGGGSSSPALPAE 1286
>RERE_MOUSE (Q80TZ9) Arginine-glutamic acid dipeptide repeats protein| (Atrophin-2) Length = 1558 Score = 32.7 bits (73), Expect = 0.41 Identities = 26/87 (29%), Positives = 33/87 (37%) Frame = -3 Query: 269 REAGEEAAVSLSSSGSNARTSHEDAKEEGEMRAAASSPLTPMDAAPPCHTHQTHARCLLF 90 RE E A SSS R S G MR + P T + A PP T A Sbjct: 1190 REREAERAAKASSSAHEGRLSDPQLSGPGHMRPSFEPPPTTIAAVPPYIGPDTPA----- 1244 Query: 89 PILSLSHSL*PHAMATRAGDAPHRKPI 9 + +LS PH M+ + P P+ Sbjct: 1245 -LRTLSEYARPHVMSPTNRNHPFYMPL 1270
>RERE_HUMAN (Q9P2R6) Arginine-glutamic acid dipeptide repeats protein| (Atrophin-1-like protein) (Atrophin-1-related protein) Length = 1566 Score = 32.7 bits (73), Expect = 0.41 Identities = 26/87 (29%), Positives = 33/87 (37%) Frame = -3 Query: 269 REAGEEAAVSLSSSGSNARTSHEDAKEEGEMRAAASSPLTPMDAAPPCHTHQTHARCLLF 90 RE E A SSS R S G MR + P T + A PP T A Sbjct: 1198 REREAERAAKASSSAHEGRLSDPQLSGPGHMRPSFEPPPTTIAAVPPYIGPDTPA----- 1252 Query: 89 PILSLSHSL*PHAMATRAGDAPHRKPI 9 + +LS PH M+ + P P+ Sbjct: 1253 -LRTLSEYARPHVMSPTNRNHPFYMPL 1278
>RERE_RAT (Q62901) Arginine-glutamic acid dipeptide repeats protein| (Atrophin-1-related protein) Length = 1559 Score = 32.3 bits (72), Expect = 0.53 Identities = 28/87 (32%), Positives = 35/87 (40%) Frame = -3 Query: 269 REAGEEAAVSLSSSGSNARTSHEDAKEEGEMRAAASSPLTPMDAAPPCHTHQTHARCLLF 90 REA E AA SSS R S G MR + P T + A PP T A Sbjct: 1192 REA-ERAAQKASSSAHEGRLSDPQLSGPGHMRPSFEPPPTTIAAVPPYIGPDTPA----- 1245 Query: 89 PILSLSHSL*PHAMATRAGDAPHRKPI 9 + +LS PH M+ + P P+ Sbjct: 1246 -LRTLSEYARPHVMSPTNRNHPFYMPL 1271
>HTPG_BRAJA (Q89CK8) Chaperone protein htpG (Heat shock protein htpG) (High| temperature protein G) Length = 625 Score = 30.0 bits (66), Expect = 2.7 Identities = 14/41 (34%), Positives = 20/41 (48%), Gaps = 1/41 (2%) Frame = -2 Query: 318 RVLKERRRAGPGR-WMWTRSGGRGGSQLEQQRQQCAHISRG 199 +++ RRAG W WT SGG G + A ++RG Sbjct: 139 KIIVVSRRAGESDVWSWTSSGGSGFEIARASEEDAARVTRG 179
>ALL2_ASPFU (P79017) Major allergen Asp f 2 precursor (Asp f II)| Length = 310 Score = 29.3 bits (64), Expect = 4.5 Identities = 15/57 (26%), Positives = 23/57 (40%) Frame = -3 Query: 284 GDGCGREAGEEAAVSLSSSGSNARTSHEDAKEEGEMRAAASSPLTPMDAAPPCHTHQ 114 G+ G + G + S S+ S + +S G SP +D CHTH+ Sbjct: 248 GESHGPDQGHDTG-SASAPASTSTSSSSSGSGSGATTTPTDSPSATIDVPSNCHTHE 303
>CUL4B_HUMAN (Q13620) Cullin-4B (CUL-4B)| Length = 895 Score = 29.3 bits (64), Expect = 4.5 Identities = 17/56 (30%), Positives = 30/56 (53%) Frame = -3 Query: 236 SSSGSNARTSHEDAKEEGEMRAAASSPLTPMDAAPPCHTHQTHARCLLFPILSLSH 69 SSS S++ +S+E + ++++ PL P D+A P T + CL + + SH Sbjct: 43 SSSSSSSNSSNEREDFDSTSSSSSTPPLQPRDSASP----STSSFCLGVSVAASSH 94
>CAC1A_HUMAN (O00555) Voltage-dependent P/Q-type calcium channel alpha-1A subunit| (Voltage-gated calcium channel alpha subunit Cav2.1) (Calcium channel, L type, alpha-1 polypeptide isoform 4) (Brain calcium channel I) (BI) Length = 2505 Score = 28.9 bits (63), Expect = 5.9 Identities = 19/67 (28%), Positives = 25/67 (37%) Frame = -3 Query: 296 EQDQGDGCGREAGEEAAVSLSSSGSNARTSHEDAKEEGEMRAAASSPLTPMDAAPPCHTH 117 + D+ DG G GEEA + R + A SP TP + P C + Sbjct: 2413 DYDEADGPGSGGGEEAMAGAYDAPPPVRHASSGA--------TGRSPRTPRASGPACASP 2464 Query: 116 QTHARCL 96 H R L Sbjct: 2465 SRHGRRL 2471
>RECQ5_HUMAN (O94762) ATP-dependent DNA helicase Q5 (EC 3.6.1.-) (RecQ| protein-like 5) (RecQ5) Length = 991 Score = 28.9 bits (63), Expect = 5.9 Identities = 18/42 (42%), Positives = 22/42 (52%), Gaps = 7/42 (16%) Frame = -3 Query: 296 EQDQG-DGCG------REAGEEAAVSLSSSGSNARTSHEDAK 192 E D+G GCG REA E+ A+ LS G NA+ H K Sbjct: 253 EADKGLSGCGIVYCRTREACEQLAIELSCRGVNAKAYHAGLK 294
>NFE2_HUMAN (Q16621) Transcription factor NF-E2 45 kDa subunit (Nuclear factor,| erythroid-derived 2 45 kDa subunit) (p45 NF-E2) (Leucine zipper protein NF-E2) Length = 373 Score = 28.9 bits (63), Expect = 5.9 Identities = 19/55 (34%), Positives = 23/55 (41%) Frame = -2 Query: 309 KERRRAGPGRWMWTRSGGRGGSQLEQQRQQCAHISRGCKRGRRDESGCLLSPHTY 145 +E R R R+ G LE RQQ + R + RDESG SP Y Sbjct: 296 RELERLTNERERLLRARGEADRTLEVMRQQLTELYRDIFQHLRDESGNSYSPEEY 350
>VE2_HPV47 (P22420) Regulatory protein E2| Length = 506 Score = 28.5 bits (62), Expect = 7.7 Identities = 20/62 (32%), Positives = 27/62 (43%), Gaps = 8/62 (12%) Frame = -2 Query: 270 TRSGGRGGSQLEQQRQQCAHIS--------RGCKRGRRDESGCLLSPHTYGRRSSLPHSP 115 +R GGRG S ++ R + S RG RGR+ +G RR S SP Sbjct: 318 SRRGGRGSSTRQRSRSPSTYTSKRSREGNTRGRGRGRQGRAGSSGGREQRRRRRSFSTSP 377 Query: 114 NS 109 +S Sbjct: 378 DS 379
>TAOK1_RAT (O88664) Serine/threonine-protein kinase TAO1 (EC 2.7.11.1)| (Thousand and one amino acid protein 1) Length = 1001 Score = 28.5 bits (62), Expect = 7.7 Identities = 16/48 (33%), Positives = 26/48 (54%) Frame = -3 Query: 245 VSLSSSGSNARTSHEDAKEEGEMRAAASSPLTPMDAAPPCHTHQTHAR 102 V +SS + + E+ +EEG+ R AS+P +P P H++H R Sbjct: 390 VMSNSSVIHLKPEEENYQEEGDPRTRASAPQSP----PQVSRHKSHYR 433
>SRBP2_CRIGR (Q60429) Sterol regulatory element-binding protein 2 (SREBP-2)| (Sterol regulatory element-binding transcription factor 2) Length = 1139 Score = 28.5 bits (62), Expect = 7.7 Identities = 18/52 (34%), Positives = 27/52 (51%), Gaps = 3/52 (5%) Frame = -3 Query: 278 GCGREAGEEAAVSLSSSGSNARTSHEDAKEEGEMRAAASSPL---TPMDAAP 132 G G ++ S SSSGSN+R + A + G R+ + PL +P A+P Sbjct: 56 GGGSSGSSSSSNSSSSSGSNSRGNGGAATDPGVQRSFSQVPLPTFSPSTASP 107
>XPC_MOUSE (P51612) DNA-repair protein complementing XP-C cells homolog| (Xeroderma pigmentosum group C-complementing protein homolog) (p125) Length = 930 Score = 28.5 bits (62), Expect = 7.7 Identities = 16/54 (29%), Positives = 29/54 (53%), Gaps = 7/54 (12%) Frame = -2 Query: 309 KERRRAGPGRWMWTRSGGRGGSQLEQQRQ-------QCAHISRGCKRGRRDESG 169 K++R + P R T++G + S+ ++ Q + + S GCKRG++ SG Sbjct: 459 KQKRASAPQR---TKAGSKSASKTQRGSQCEPSSFPEASSSSSGCKRGKKVSSG 509 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 49,953,191 Number of Sequences: 219361 Number of extensions: 818650 Number of successful extensions: 3195 Number of sequences better than 10.0: 15 Number of HSP's better than 10.0 without gapping: 2959 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 3183 length of database: 80,573,946 effective HSP length: 102 effective length of database: 58,199,124 effective search space used: 2618960580 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
