ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name bastl31g06
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1SYV_ARATH (P93736) Valyl-tRNA synthetase (EC 6.1.1.9) (Valine--t... 65 7e-11
2VTS1_ASHGO (Q758Y4) Protein VTS1 30 3.1
3SYV_FUGRU (P49696) Valyl-tRNA synthetase (EC 6.1.1.9) (Valine--t... 28 8.9

>SYV_ARATH (P93736) Valyl-tRNA synthetase (EC 6.1.1.9) (Valine--tRNA ligase)|
           (ValRS)
          Length = 1108

 Score = 65.5 bits (158), Expect = 7e-11
 Identities = 28/39 (71%), Positives = 33/39 (84%)
 Frame = +3

Query: 351 ADDENPEDFIDPETPSGRKKSLAPQMAKQYSPSTVGKSW 467
           A +ENPEDF+DPETP G +K L+ QMAKQYSP+TV KSW
Sbjct: 111 ASEENPEDFVDPETPLGERKRLSSQMAKQYSPATVEKSW 149



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>VTS1_ASHGO (Q758Y4) Protein VTS1|
          Length = 490

 Score = 30.0 bits (66), Expect = 3.1
 Identities = 16/55 (29%), Positives = 22/55 (40%)
 Frame = +3

Query: 303 TSDGPXXXXXXXXXXAADDENPEDFIDPETPSGRKKSLAPQMAKQYSPSTVGKSW 467
           TS GP          ++ + NP+   DP+        L      +YS S  GKSW
Sbjct: 390 TSPGPSTPNAASNVSSSSNMNPKSLCDPKLLKNIPAWLKSLRLHKYSASLNGKSW 444



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>SYV_FUGRU (P49696) Valyl-tRNA synthetase (EC 6.1.1.9) (Valine--tRNA ligase)|
           (ValRS)
          Length = 1217

 Score = 28.5 bits (62), Expect = 8.9
 Identities = 12/29 (41%), Positives = 15/29 (51%)
 Frame = +3

Query: 381 DPETPSGRKKSLAPQMAKQYSPSTVGKSW 467
           D  TPSG KK +   +   YSP  V  +W
Sbjct: 230 DIPTPSGEKKDVVSPLPDSYSPQYVEAAW 258


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 34,849,214
Number of Sequences: 219361
Number of extensions: 369684
Number of successful extensions: 1153
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 1144
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1153
length of database: 80,573,946
effective HSP length: 103
effective length of database: 57,979,763
effective search space used: 3014947676
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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