ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name bastl31g05
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1SH24A_RAT (Q6AYC8) SH2 domain-containing protein 4A 31 1.0
2SH24A_MOUSE (Q9D7V1) SH2 domain-containing protein 4A 31 1.0
3SH24A_HUMAN (Q9H788) SH2 domain-containing protein 4A (Protein S... 30 1.3
4HMGN3_RAT (Q66H40) High mobility group nucleosome-binding domain... 29 3.9
5FOXO4_HUMAN (P98177) Putative fork head domain transcription fac... 28 8.7

>SH24A_RAT (Q6AYC8) SH2 domain-containing protein 4A|
          Length = 422

 Score = 30.8 bits (68), Expect = 1.0
 Identities = 14/34 (41%), Positives = 19/34 (55%)
 Frame = -2

Query: 194 ESGPGFDGPRAEGGKEEDWRGGSARNWWVLVLGE 93
           ES P    P+ E GK   W+ G+ +  WV V+GE
Sbjct: 50  ESLPVKSRPKKENGKSVHWKLGADKQVWVWVMGE 83



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>SH24A_MOUSE (Q9D7V1) SH2 domain-containing protein 4A|
          Length = 421

 Score = 30.8 bits (68), Expect = 1.0
 Identities = 14/34 (41%), Positives = 19/34 (55%)
 Frame = -2

Query: 194 ESGPGFDGPRAEGGKEEDWRGGSARNWWVLVLGE 93
           ES P    P+ E GK   W+ G+ +  WV V+GE
Sbjct: 50  ESLPVKSRPKKENGKSVHWKLGADKQVWVWVMGE 83



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>SH24A_HUMAN (Q9H788) SH2 domain-containing protein 4A (Protein SH(2)A)|
          Length = 454

 Score = 30.4 bits (67), Expect = 1.3
 Identities = 14/34 (41%), Positives = 19/34 (55%)
 Frame = -2

Query: 194 ESGPGFDGPRAEGGKEEDWRGGSARNWWVLVLGE 93
           ES P    P+ E GK   W+ G+ +  WV V+GE
Sbjct: 50  ESLPVKPRPKKENGKSVHWKLGADKEVWVWVMGE 83



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>HMGN3_RAT (Q66H40) High mobility group nucleosome-binding domain-containing|
           protein 3
          Length = 95

 Score = 28.9 bits (63), Expect = 3.9
 Identities = 14/35 (40%), Positives = 20/35 (57%)
 Frame = +1

Query: 13  GKKYNQAAKRRGEERQSAAIRVRGPSASPKTRTHQ 117
           G K N+AAK + EE+Q A      PSA+  T+  +
Sbjct: 53  GTKINRAAKGKKEEKQEAGKEGTAPSANGDTKAEE 87



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>FOXO4_HUMAN (P98177) Putative fork head domain transcription factor AFX1|
           (Forkhead box protein O4)
          Length = 505

 Score = 27.7 bits (60), Expect = 8.7
 Identities = 12/36 (33%), Positives = 22/36 (61%)
 Frame = +1

Query: 1   IHPKGKKYNQAAKRRGEERQSAAIRVRGPSASPKTR 108
           ++P+G K  +A +RR     S++  +RG S +PK +
Sbjct: 180 LNPEGGKSGKAPRRRAASMDSSSKLLRGRSKAPKKK 215


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.311    0.124    0.346 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 19,293,563
Number of Sequences: 219361
Number of extensions: 239130
Number of successful extensions: 692
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 664
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 692
length of database: 80,573,946
effective HSP length: 40
effective length of database: 71,799,506
effective search space used: 1723188144
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
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