Clone Information

BLAST Search Result

Clone Name	bastl31g02
Clone Library Name	barley_pub

No.	Definition	Score (bits)	E Value
1	AP2B1_RAT (P62944) AP-2 complex subunit beta-1 (Adapter-related ...	106	3e-23
2	AP2B1_MOUSE (Q9DBG3) AP-2 complex subunit beta-1 (Adapter-relate...	106	3e-23
3	AP2B1_HUMAN (P63010) AP-2 complex subunit beta-1 (Adapter-relate...	106	3e-23
4	AP1B1_RAT (P52303) AP-1 complex subunit beta-1 (Adapter-related ...	105	7e-23
5	AP1B1_HUMAN (Q10567) AP-1 complex subunit beta-1 (Adapter-relate...	105	7e-23
6	AP1B1_MOUSE (O35643) AP-1 complex subunit beta-1 (Adapter-relate...	105	7e-23
7	AP2B1_BOVIN (P63009) AP-2 complex subunit beta-1 (Adapter-relate...	65	1e-10
8	AP1B1_SCHPO (O43079) AP-1 complex subunit beta-1 (Beta(1)-adapti...	64	2e-10
9	AP1B1_YEAST (P36000) AP-1 complex subunit beta-1 (Beta(1)-adapti...	60	2e-09
10	AP2B_SCHPO (O43005) AP-2 complex subunit beta (Beta-adaptin) (Cl...	47	2e-05
11	AP3B1_CANFA (Q7YRF1) AP-3 complex subunit beta-1 (Adapter-relate...	45	1e-04
12	AP3B1_HUMAN (O00203) AP-3 complex subunit beta-1 (Adapter-relate...	44	2e-04
13	AP3B1_MOUSE (Q9Z1T1) AP-3 complex subunit beta-1 (Adapter-relate...	44	2e-04
14	AP3B2_MOUSE (Q9JME5) AP-3 complex subunit beta-2 (Adapter-relate...	37	0.022
15	AP3B2_HUMAN (Q13367) AP-3 complex subunit beta-2 (Adapter-relate...	37	0.022
16	RNZ_BRAJA (Q89NF8) Ribonuclease Z (EC 3.1.26.11) (RNase Z) (tRNa...	32	0.54
17	AP3B_ASHGO (Q759E2) AP-3 complex subunit beta (Beta-adaptin) (Ad...	32	0.91
18	AP3B_SCHPO (O13939) AP-3 complex subunit beta (Beta-adaptin) (Ad...	31	1.2
19	ATIN_BHV1P (P30020) Alpha trans-inducing protein (Alpha-TIF)	31	1.2
20	ICP4_EHV1V (Q6S6U0) Trans-acting transcriptional protein ICP4 (1...	31	1.6
21	ICP4_EHV1K (P17473) Trans-acting transcriptional protein ICP4 (1...	31	1.6
22	ICP4_EHV1B (P28925) Trans-acting transcriptional protein ICP4 (1...	31	1.6
23	AP2B_YEAST (P27351) AP-2 complex subunit beta (Beta-adaptin) (Cl...	30	2.7
24	KINH_STRPU (P35978) Kinesin heavy chain	30	3.5
25	VCOM_ADEM1 (O10442) Minor core protein (Protein V) (pV)	29	4.5
26	RENBP_PIG (P17560) N-acylglucosamine 2-epimerase (EC 5.1.3.8) (G...	29	4.5
27	CCNA2_CHICK (P43449) Cyclin-A2 (Cyclin-A)	29	4.5
28	RRF_WIGBR (Q8D2G5) Ribosome recycling factor (Ribosome-releasing...	29	5.9
29	KCNC4_MOUSE (Q8R1C0) Potassium voltage-gated channel subfamily C...	29	5.9
30	ROCK1_PANTR (P61584) Rho-associated protein kinase 1 (EC 2.7.11....	28	7.7
31	TARSH_HUMAN (Q7Z7G0) Target of Nesh-SH3 precursor (Tarsh) (Nesh-...	28	7.7
32	ROCK1_RABIT (O77819) Rho-associated protein kinase 1 (EC 2.7.11....	28	7.7
33	ROCK1_HUMAN (Q13464) Rho-associated protein kinase 1 (EC 2.7.11....	28	7.7
34	LEA2_CICAR (O49817) Late embryogenesis abundant protein 2 (CapLE...	28	7.7
35	MLL3_HUMAN (Q8NEZ4) Myeloid/lymphoid or mixed-lineage leukemia p...	28	7.7
36	DPOLA_ORYSA (O48653) DNA polymerase alpha catalytic subunit (EC ...	28	7.7
37	ATRIP_DROME (Q9VVN4) ATR-interacting protein mus304 (Mutagen-sen...	28	7.7
38	ROCK1_BOVIN (Q8MIT6) Rho-associated protein kinase 1 (EC 2.7.11....	28	7.7
39	NOLA1_HUMAN (Q9NY12) H/ACA ribonucleoprotein complex subunit 1 (...	28	7.7
40	NELFA_HUMAN (Q9H3P2) Negative elongation factor A (NELF-A) (Wolf...	28	7.7

>AP2B1_RAT (P62944) AP-2 complex subunit beta-1 (Adapter-related protein|
           complex 2 beta-1 subunit) (Beta-adaptin) (Plasma
           membrane adaptor HA2/AP2 adaptin beta subunit) (Clathrin
           assembly protein complex 2 beta large chain) (AP105B)
          Length = 937

 Score =  106 bits (264), Expect = 3e-23
 Identities = 53/64 (82%), Positives = 59/64 (92%)
 Frame = +3

Query: 222 DSKYFSTTKKGEIPELKEELNSQYKDKRKDAVKKVIAAMTVGKDVSSLFTDVVNCMQTEN 401
           DSKYF+T KKGEI ELK ELN++ K+KRK+AVKKVIAAMTVGKDVSSLF DVVNCMQT+N
Sbjct: 3   DSKYFTTNKKGEIFELKAELNNEKKEKRKEAVKKVIAAMTVGKDVSSLFPDVVNCMQTDN 62

Query: 402 LELK 413
           LELK
Sbjct: 63  LELK 66

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>AP2B1_MOUSE (Q9DBG3) AP-2 complex subunit beta-1 (Adapter-related protein|
           complex 2 beta-1 subunit) (Beta-adaptin) (Plasma
           membrane adaptor HA2/AP2 adaptin beta subunit) (Clathrin
           assembly protein complex 2 beta large chain) (AP105B)
          Length = 937

 Score =  106 bits (264), Expect = 3e-23
 Identities = 53/64 (82%), Positives = 59/64 (92%)
 Frame = +3

Query: 222 DSKYFSTTKKGEIPELKEELNSQYKDKRKDAVKKVIAAMTVGKDVSSLFTDVVNCMQTEN 401
           DSKYF+T KKGEI ELK ELN++ K+KRK+AVKKVIAAMTVGKDVSSLF DVVNCMQT+N
Sbjct: 3   DSKYFTTNKKGEIFELKAELNNEKKEKRKEAVKKVIAAMTVGKDVSSLFPDVVNCMQTDN 62

Query: 402 LELK 413
           LELK
Sbjct: 63  LELK 66

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>AP2B1_HUMAN (P63010) AP-2 complex subunit beta-1 (Adapter-related protein|
           complex 2 beta-1 subunit) (Beta-adaptin) (Plasma
           membrane adaptor HA2/AP2 adaptin beta subunit) (Clathrin
           assembly protein complex 2 beta large chain) (AP105B)
          Length = 937

 Score =  106 bits (264), Expect = 3e-23
 Identities = 53/64 (82%), Positives = 59/64 (92%)
 Frame = +3

Query: 222 DSKYFSTTKKGEIPELKEELNSQYKDKRKDAVKKVIAAMTVGKDVSSLFTDVVNCMQTEN 401
           DSKYF+T KKGEI ELK ELN++ K+KRK+AVKKVIAAMTVGKDVSSLF DVVNCMQT+N
Sbjct: 3   DSKYFTTNKKGEIFELKAELNNEKKEKRKEAVKKVIAAMTVGKDVSSLFPDVVNCMQTDN 62

Query: 402 LELK 413
           LELK
Sbjct: 63  LELK 66

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>AP1B1_RAT (P52303) AP-1 complex subunit beta-1 (Adapter-related protein|
           complex 1 beta-1 subunit) (Beta-adaptin 1) (Adaptor
           protein complex AP-1 beta-1 subunit) (Golgi adaptor
           HA1/AP1 adaptin beta subunit) (Clathrin assembly protein
           complex 1 beta large
          Length = 949

 Score =  105 bits (261), Expect = 7e-23
 Identities = 52/64 (81%), Positives = 59/64 (92%)
 Frame = +3

Query: 222 DSKYFSTTKKGEIPELKEELNSQYKDKRKDAVKKVIAAMTVGKDVSSLFTDVVNCMQTEN 401
           DSKYF+TTKKGEI ELK ELNS  K+K+K+AVKKVIA+MTVGKDVS+LF DVVNCMQT+N
Sbjct: 3   DSKYFTTTKKGEIFELKAELNSDKKEKKKEAVKKVIASMTVGKDVSALFPDVVNCMQTDN 62

Query: 402 LELK 413
           LELK
Sbjct: 63  LELK 66

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>AP1B1_HUMAN (Q10567) AP-1 complex subunit beta-1 (Adapter-related protein|
           complex 1 beta-1 subunit) (Beta-adaptin 1) (Adaptor
           protein complex AP-1 beta-1 subunit) (Golgi adaptor
           HA1/AP1 adaptin beta subunit) (Clathrin assembly protein
           complex 1 beta larg
          Length = 949

 Score =  105 bits (261), Expect = 7e-23
 Identities = 52/64 (81%), Positives = 59/64 (92%)
 Frame = +3

Query: 222 DSKYFSTTKKGEIPELKEELNSQYKDKRKDAVKKVIAAMTVGKDVSSLFTDVVNCMQTEN 401
           DSKYF+TTKKGEI ELK ELNS  K+K+K+AVKKVIA+MTVGKDVS+LF DVVNCMQT+N
Sbjct: 3   DSKYFTTTKKGEIFELKAELNSDKKEKKKEAVKKVIASMTVGKDVSALFPDVVNCMQTDN 62

Query: 402 LELK 413
           LELK
Sbjct: 63  LELK 66

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>AP1B1_MOUSE (O35643) AP-1 complex subunit beta-1 (Adapter-related protein|
           complex 1 beta-1 subunit) (Beta-adaptin 1) (Adaptor
           protein complex AP-1 beta-1 subunit) (Golgi adaptor
           HA1/AP1 adaptin beta subunit) (Clathrin assembly protein
           complex 1 beta larg
          Length = 943

 Score =  105 bits (261), Expect = 7e-23
 Identities = 52/64 (81%), Positives = 59/64 (92%)
 Frame = +3

Query: 222 DSKYFSTTKKGEIPELKEELNSQYKDKRKDAVKKVIAAMTVGKDVSSLFTDVVNCMQTEN 401
           DSKYF+TTKKGEI ELK ELNS  K+K+K+AVKKVIA+MTVGKDVS+LF DVVNCMQT+N
Sbjct: 3   DSKYFTTTKKGEIFELKAELNSDKKEKKKEAVKKVIASMTVGKDVSALFPDVVNCMQTDN 62

Query: 402 LELK 413
           LELK
Sbjct: 63  LELK 66

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>AP2B1_BOVIN (P63009) AP-2 complex subunit beta-1 (Adapter-related protein|
           complex 2 beta-1 subunit) (Beta-adaptin) (Plasma
           membrane adaptor HA2/AP2 adaptin beta subunit) (Clathrin
           assembly protein complex 2 beta large chain) (AP105B)
           (Fragment)
          Length = 236

 Score = 64.7 bits (156), Expect = 1e-10
 Identities = 32/34 (94%), Positives = 33/34 (97%)
 Frame = +3

Query: 312 AVKKVIAAMTVGKDVSSLFTDVVNCMQTENLELK 413
           AVKKVIAAMTVGKDVSSLF DVVNCMQT+NLELK
Sbjct: 1   AVKKVIAAMTVGKDVSSLFPDVVNCMQTDNLELK 34

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>AP1B1_SCHPO (O43079) AP-1 complex subunit beta-1 (Beta(1)-adaptin) (Clathrin|
           assembly protein large beta-1 chain) (Clathrin assembly
           protein complex 1 beta-1 large chain)
          Length = 683

 Score = 63.9 bits (154), Expect = 2e-10
 Identities = 35/63 (55%), Positives = 43/63 (68%)
 Frame = +3

Query: 225 SKYFSTTKKGEIPELKEELNSQYKDKRKDAVKKVIAAMTVGKDVSSLFTDVVNCMQTENL 404
           S  F   KK E  EL++ L SQY  +R DAVK+ IAAMTVGKDVSSLF DV+  + T ++
Sbjct: 8   SSRFKAFKKSETSELQKGLVSQYAYERIDAVKRTIAAMTVGKDVSSLFPDVLKNLATRDI 67

Query: 405 ELK 413
            LK
Sbjct: 68  TLK 70

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>AP1B1_YEAST (P36000) AP-1 complex subunit beta-1 (Beta(1)-adaptin) (Clathrin|
           assembly protein large beta-1 chain) (Clathrin assembly
           protein complex 1 beta-1 large chain)
          Length = 726

 Score = 60.1 bits (144), Expect = 2e-09
 Identities = 31/55 (56%), Positives = 39/55 (70%)
 Frame = +3

Query: 249 KGEIPELKEELNSQYKDKRKDAVKKVIAAMTVGKDVSSLFTDVVNCMQTENLELK 413
           KGE+ EL+  L SQY   RKDA+KK I  MT+GKDVSSLF DV+  + T ++E K
Sbjct: 25  KGELSELRTGLVSQYPQTRKDAIKKTIQQMTLGKDVSSLFPDVLKNIATIDVEQK 79

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>AP2B_SCHPO (O43005) AP-2 complex subunit beta (Beta-adaptin) (Clathrin|
           assembly protein large beta chain) (Clathrin assembly
           protein complex 2 beta large chain)
          Length = 677

 Score = 47.4 bits (111), Expect = 2e-05
 Identities = 24/63 (38%), Positives = 38/63 (60%)
 Frame = +3

Query: 225 SKYFSTTKKGEIPELKEELNSQYKDKRKDAVKKVIAAMTVGKDVSSLFTDVVNCMQTENL 404
           S +FS+T    +     +   +  +KR  A+KK IA ++ G D+SSLF  V++ M++ NL
Sbjct: 5   SSHFSSTAADLLAVFSSDNKDKSANKRISALKKAIAGISYGYDMSSLFPSVISSMESNNL 64

Query: 405 ELK 413
           ELK
Sbjct: 65  ELK 67

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>AP3B1_CANFA (Q7YRF1) AP-3 complex subunit beta-1 (Adapter-related protein|
           complex 3 beta-1 subunit) (Beta3A-adaptin) (Adaptor
           protein complex AP-3 beta-1 subunit) (Clathrin assembly
           protein complex 3 beta-1 large chain)
          Length = 1091

 Score = 44.7 bits (104), Expect = 1e-04
 Identities = 29/86 (33%), Positives = 46/86 (53%), Gaps = 1/86 (1%)
 Frame = +3

Query: 159 AGGGDRCVFGR*ARRG-DMSGHDSKYFSTTKKGEIPELKEELNSQYKDKRKDAVKKVIAA 335
           AGGG+    G+ A      SG    + S  KK E  +LK+ L S     + DA+K+++  
Sbjct: 12  AGGGEATELGQEATSTVSPSGAFGLFSSDLKKNE--DLKQMLESNKDSAKLDAMKRIVGM 69

Query: 336 MTVGKDVSSLFTDVVNCMQTENLELK 413
           +  GK+ S LF  VV  + ++N+E+K
Sbjct: 70  IAKGKNASELFPAVVKNVASKNIEIK 95

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>AP3B1_HUMAN (O00203) AP-3 complex subunit beta-1 (Adapter-related protein|
           complex 3 beta-1 subunit) (Beta3A-adaptin) (Adaptor
           protein complex AP-3 beta-1 subunit) (Clathrin assembly
           protein complex 3 beta-1 large chain)
          Length = 1094

 Score = 43.5 bits (101), Expect = 2e-04
 Identities = 28/86 (32%), Positives = 46/86 (53%), Gaps = 1/86 (1%)
 Frame = +3

Query: 159 AGGGDRCVFGR*ARRG-DMSGHDSKYFSTTKKGEIPELKEELNSQYKDKRKDAVKKVIAA 335
           +GGG+    G+ A      SG    + S  KK E  +LK+ L S     + DA+K+++  
Sbjct: 12  SGGGEATELGQEATSTISPSGAFGLFSSDLKKNE--DLKQMLESNKDSAKLDAMKRIVGM 69

Query: 336 MTVGKDVSSLFTDVVNCMQTENLELK 413
           +  GK+ S LF  VV  + ++N+E+K
Sbjct: 70  IAKGKNASELFPAVVKNVASKNIEIK 95

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>AP3B1_MOUSE (Q9Z1T1) AP-3 complex subunit beta-1 (Adapter-related protein|
           complex 3 beta-1 subunit) (Beta3A-adaptin) (Adaptor
           protein complex AP-3 beta-1 subunit) (Clathrin assembly
           protein complex 3 beta-1 large chain)
          Length = 1105

 Score = 43.5 bits (101), Expect = 2e-04
 Identities = 28/86 (32%), Positives = 46/86 (53%), Gaps = 1/86 (1%)
 Frame = +3

Query: 159 AGGGDRCVFGR*ARRG-DMSGHDSKYFSTTKKGEIPELKEELNSQYKDKRKDAVKKVIAA 335
           +GGG+    G+ A      SG    + S  KK E  +LK+ L S     + DA+K+++  
Sbjct: 12  SGGGEAAELGQEATSTISPSGAFGLFSSDWKKNE--DLKQMLESNKDSAKLDAMKRIVGM 69

Query: 336 MTVGKDVSSLFTDVVNCMQTENLELK 413
           +  GK+ S LF  VV  + ++N+E+K
Sbjct: 70  IAKGKNASELFPAVVKNVASKNIEIK 95

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>AP3B2_MOUSE (Q9JME5) AP-3 complex subunit beta-2 (Adapter-related protein|
           complex 3 beta-2 subunit) (Beta3B-adaptin) (Adaptor
           protein complex AP-3 beta-2 subunit) (Clathrin assembly
           protein complex 3 beta-2 large chain)
          Length = 1082

 Score = 37.0 bits (84), Expect = 0.022
 Identities = 23/69 (33%), Positives = 39/69 (56%), Gaps = 3/69 (4%)
 Frame = +3

Query: 216 GHDSK---YFSTTKKGEIPELKEELNSQYKDKRKDAVKKVIAAMTVGKDVSSLFTDVVNC 386
           GHD      FS+  K    +LKE L++     + +A+K+++A +  GK+ S LF  VV  
Sbjct: 23  GHDPASGGIFSSDYKRH-DDLKEMLDTNKDSLKLEAMKRIVAMIARGKNASDLFPAVVKN 81

Query: 387 MQTENLELK 413
           +  +N+E+K
Sbjct: 82  VACKNIEVK 90

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>AP3B2_HUMAN (Q13367) AP-3 complex subunit beta-2 (Adapter-related protein|
           complex 3 beta-2 subunit) (Beta3B-adaptin) (Adaptor
           protein complex AP-3 beta-2 subunit) (AP-3 complex
           beta-2 subunit) (Clathrin assembly protein complex 3
           beta-2 large chain) (Neu
          Length = 1082

 Score = 37.0 bits (84), Expect = 0.022
 Identities = 23/69 (33%), Positives = 39/69 (56%), Gaps = 3/69 (4%)
 Frame = +3

Query: 216 GHDSK---YFSTTKKGEIPELKEELNSQYKDKRKDAVKKVIAAMTVGKDVSSLFTDVVNC 386
           GHD      FS+  K    +LKE L++     + +A+K+++A +  GK+ S LF  VV  
Sbjct: 23  GHDPASGGIFSSDYKRH-DDLKEMLDTNKDSLKLEAMKRIVAMIARGKNASDLFPAVVKN 81

Query: 387 MQTENLELK 413
           +  +N+E+K
Sbjct: 82  VACKNIEVK 90

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>RNZ_BRAJA (Q89NF8) Ribonuclease Z (EC 3.1.26.11) (RNase Z) (tRNase Z) (tRNA 3|
           endonuclease)
          Length = 301

 Score = 32.3 bits (72), Expect = 0.54
 Identities = 22/61 (36%), Positives = 24/61 (39%), Gaps = 2/61 (3%)
 Frame = -1

Query: 178 HRSPPPAAEPGVRDGGLRYARGGGRPACLRDGMGLD--SARGSQAGVRACESYGDQTDRE 5
           H  P   A  GV DG LR     GRP  + DG  +D     G   G R     GD    E
Sbjct: 157 HLLPDRLASLGVPDGPLRGELAQGRPVVIEDGRTIDPEDVLGPATGGRKLVVIGDTETTE 216

Query: 4   G 2
           G
Sbjct: 217 G 217

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>AP3B_ASHGO (Q759E2) AP-3 complex subunit beta (Beta-adaptin) (Adapter-related|
           protein complex 3 beta subunit) (Clathrin assembly
           protein large beta chain) (Clathrin assembly protein
           complex 3 beta large chain)
          Length = 781

 Score = 31.6 bits (70), Expect = 0.91
 Identities = 17/67 (25%), Positives = 39/67 (58%), Gaps = 3/67 (4%)
 Frame = +3

Query: 222 DSKYFSTTKKGEIPELKEELNSQYKDKRKDAVKKVIAAMTVGK---DVSSLFTDVVNCMQ 392
           +S YF  +K  +   L   LNS+Y  + +D +K+V++ M  G    ++ + F D+V  + 
Sbjct: 32  ESSYFHYSKSIDSESLPGLLNSRYTREVRDGMKRVMSLMGSGDSSIELETHFADIVKNIG 91

Query: 393 TENLELK 413
           +++++++
Sbjct: 92  SDDVKVR 98

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>AP3B_SCHPO (O13939) AP-3 complex subunit beta (Beta-adaptin) (Adapter-related|
           protein complex 3 beta subunit) (Clathrin assembly
           protein large beta chain) (Clathrin assembly protein
           complex 3 beta large chain)
          Length = 745

 Score = 31.2 bits (69), Expect = 1.2
 Identities = 16/50 (32%), Positives = 29/50 (58%)
 Frame = +3

Query: 264 ELKEELNSQYKDKRKDAVKKVIAAMTVGKDVSSLFTDVVNCMQTENLELK 413
           +L   LNS     + +A+  ++A M  G+++S  F DVV  + +EN E++
Sbjct: 37  DLLRLLNSNSDAGKLEAINFILAQMMHGENMSLYFPDVVKLVASENPEIR 86

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>ATIN_BHV1P (P30020) Alpha trans-inducing protein (Alpha-TIF)|
          Length = 504

 Score = 31.2 bits (69), Expect = 1.2
 Identities = 15/29 (51%), Positives = 18/29 (62%)
 Frame = -1

Query: 121 ARGGGRPACLRDGMGLDSARGSQAGVRAC 35
           ARGG  P+ +R G+GL  ARGS     AC
Sbjct: 439 ARGGPGPSPVRSGLGLSRARGSPGPGPAC 467

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>ICP4_EHV1V (Q6S6U0) Trans-acting transcriptional protein ICP4 (155 kDa|
           immediate-early protein)
          Length = 1487

 Score = 30.8 bits (68), Expect = 1.6
 Identities = 15/42 (35%), Positives = 19/42 (45%)
 Frame = -1

Query: 208 SPRRAYLPNTHRSPPPAAEPGVRDGGLRYARGGGRPACLRDG 83
           +PR  +  N  ++P  A  PG   GG R A G   P   R G
Sbjct: 226 TPRPRHSQNAAKTPSAAGSPGPSSGGDRPAAGAATPKSCRSG 267

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>ICP4_EHV1K (P17473) Trans-acting transcriptional protein ICP4 (155 kDa|
           immediate-early protein)
          Length = 1487

 Score = 30.8 bits (68), Expect = 1.6
 Identities = 15/42 (35%), Positives = 19/42 (45%)
 Frame = -1

Query: 208 SPRRAYLPNTHRSPPPAAEPGVRDGGLRYARGGGRPACLRDG 83
           +PR  +  N  ++P  A  PG   GG R A G   P   R G
Sbjct: 226 TPRPRHSQNAAKTPSAAGSPGPSSGGDRPAAGAATPKSCRSG 267

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>ICP4_EHV1B (P28925) Trans-acting transcriptional protein ICP4 (155 kDa|
           immediate-early protein)
          Length = 1487

 Score = 30.8 bits (68), Expect = 1.6
 Identities = 15/42 (35%), Positives = 19/42 (45%)
 Frame = -1

Query: 208 SPRRAYLPNTHRSPPPAAEPGVRDGGLRYARGGGRPACLRDG 83
           +PR  +  N  ++P  A  PG   GG R A G   P   R G
Sbjct: 226 TPRPRHSQNAAKTPSAAGSPGPSSGGDRPAAGAATPKSCRSG 267

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>AP2B_YEAST (P27351) AP-2 complex subunit beta (Beta-adaptin) (Clathrin|
           assembly protein large beta chain) (Clathrin assembly
           protein complex 2 beta large chain)
          Length = 700

 Score = 30.0 bits (66), Expect = 2.7
 Identities = 23/71 (32%), Positives = 43/71 (60%), Gaps = 7/71 (9%)
 Frame = +3

Query: 222 DSKYFSTTKKGEI-PELKEELNSQYKD---KRKDAVKKVIAAMTVGK--DVSSLFTDVVN 383
           D K F+  K  EI  +L+     ++K    +RK+A++K+IA + +G   ++S LF++++ 
Sbjct: 3   DQKVFARYKANEIVTDLQHFGVKKFKSNITRRKNALRKIIANLVLGNYGEMSVLFSELLK 62

Query: 384 CMQTE-NLELK 413
             Q E +LE+K
Sbjct: 63  FWQIEDDLEVK 73

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>KINH_STRPU (P35978) Kinesin heavy chain|
          Length = 1031

 Score = 29.6 bits (65), Expect = 3.5
 Identities = 12/26 (46%), Positives = 13/26 (50%)
 Frame = -1

Query: 178  HRSPPPAAEPGVRDGGLRYARGGGRP 101
            H  P P    G+R GG    RGGG P
Sbjct: 925  HPPPSPGGSTGIRGGGYSGIRGGGSP 950

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>VCOM_ADEM1 (O10442) Minor core protein (Protein V) (pV)|
          Length = 228

 Score = 29.3 bits (64), Expect = 4.5
 Identities = 17/40 (42%), Positives = 20/40 (50%)
 Frame = +2

Query: 50  RLAPPRRVQSHPIAQTGRPPATARISEASITNPGLRSRRR 169
           R  PP  V+ HP  +  RPPA      A I+ P  R RRR
Sbjct: 130 RAVPPVGVRYHPSIEVARPPA------ARISPPRRRRRRR 163

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>RENBP_PIG (P17560) N-acylglucosamine 2-epimerase (EC 5.1.3.8) (GlcNAc|
           2-epimerase) (N-acetyl-D-glucosamine 2-epimerase) (AGE)
           (Renin-binding protein) (RnBP)
          Length = 402

 Score = 29.3 bits (64), Expect = 4.5
 Identities = 23/86 (26%), Positives = 36/86 (41%), Gaps = 4/86 (4%)
 Frame = +2

Query: 44  HTRLAPPRRVQSHPIAQTGRPPATAR--ISEASITNPGLRSRRR*PVCIWQVGSPGRYER 217
           H R+APP +  +  + + GRP    R   SE   T             +W+V +  RY+ 
Sbjct: 94  HARVAPPEKKCAFVLTRDGRPVKVQRSIFSECFYTMAMNE--------LWRVTAEARYQS 145

Query: 218 ARLQVL--LHHQKGGDPRAQGGAQLP 289
             + ++  + H    DP   G  QLP
Sbjct: 146 EAVDMMDQIVHWVREDPSGLGRPQLP 171

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>CCNA2_CHICK (P43449) Cyclin-A2 (Cyclin-A)|
          Length = 395

 Score = 29.3 bits (64), Expect = 4.5
 Identities = 23/64 (35%), Positives = 30/64 (46%), Gaps = 2/64 (3%)
 Frame = -1

Query: 190 LPNTHRSPPPAAEPGVRDGGLR--YARGGGRPACLRDGMGLDSARGSQAGVRACESYGDQ 17
           +P   ++PPPAA   V  G LR   AR G      R+G G  +A G Q   +    Y D+
Sbjct: 11  VPPAAKAPPPAAGTRVALGLLRGGPARPGPAAQAARNGEGRGAAAGQQQ--QPFSVYVDE 68

Query: 16  TDRE 5
            D E
Sbjct: 69  PDEE 72

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>RRF_WIGBR (Q8D2G5) Ribosome recycling factor (Ribosome-releasing factor)|
           (RRF)
          Length = 185

 Score = 28.9 bits (63), Expect = 5.9
 Identities = 14/38 (36%), Positives = 22/38 (57%), Gaps = 3/38 (7%)
 Frame = +3

Query: 303 RKDA---VKKVIAAMTVGKDVSSLFTDVVNCMQTENLE 407
           R+DA   +KK+I A T+GKD    F +V+  +    +E
Sbjct: 132 RRDANEKIKKLIKAKTIGKDEDKKFQEVIQNLTNSRIE 169

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>KCNC4_MOUSE (Q8R1C0) Potassium voltage-gated channel subfamily C member 4|
           (Voltage-gated potassium channel subunit Kv3.4)
          Length = 628

 Score = 28.9 bits (63), Expect = 5.9
 Identities = 16/45 (35%), Positives = 19/45 (42%)
 Frame = -1

Query: 151 PGVRDGGLRYARGGGRPACLRDGMGLDSARGSQAGVRACESYGDQ 17
           PG R   L    GGGRP     G G   + G   G   CE + D+
Sbjct: 58  PGTRLAWLADPDGGGRPESDGGGAGSSGSSGGGGGGGGCEFFFDR 102

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>ROCK1_PANTR (P61584) Rho-associated protein kinase 1 (EC 2.7.11.1)|
           (Rho-associated, coiled-coil-containing protein kinase
           1) (p160 ROCK-1) (p160ROCK) (Fragment)
          Length = 1003

 Score = 28.5 bits (62), Expect = 7.7
 Identities = 13/33 (39%), Positives = 23/33 (69%)
 Frame = +3

Query: 228 KYFSTTKKGEIPELKEELNSQYKDKRKDAVKKV 326
           +YFST  K ++ ELKEE+    ++K ++ +KK+
Sbjct: 499 QYFSTLYKTQVKELKEEI----EEKNRENLKKI 527

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>TARSH_HUMAN (Q7Z7G0) Target of Nesh-SH3 precursor (Tarsh) (Nesh-binding|
           protein) (NeshBP) (ABI gene family member 3-binding
           protein)
          Length = 1075

 Score = 28.5 bits (62), Expect = 7.7
 Identities = 16/36 (44%), Positives = 18/36 (50%)
 Frame = +2

Query: 62  PRRVQSHPIAQTGRPPATARISEASITNPGLRSRRR 169
           PRR    P   TG+P +   IS   IT P LRS  R
Sbjct: 716 PRRKPLPPNNVTGKPGSAGIISSGPITTPPLRSTPR 751

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>ROCK1_RABIT (O77819) Rho-associated protein kinase 1 (EC 2.7.11.1)|
           (Rho-associated, coiled-coil-containing protein kinase
           1) (p160 ROCK-1) (p160ROCK) (cAMP-dependent protein
           kinase ROCK-I) (CePKA) (Corneal epithelial
           Rho-associated-Ser/Thr kinase 1) (HEB
          Length = 1354

 Score = 28.5 bits (62), Expect = 7.7
 Identities = 13/33 (39%), Positives = 23/33 (69%)
 Frame = +3

Query: 228 KYFSTTKKGEIPELKEELNSQYKDKRKDAVKKV 326
           +YFST  K ++ ELKEE+    ++K ++ +KK+
Sbjct: 850 QYFSTLYKTQVKELKEEI----EEKNRENLKKI 878

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>ROCK1_HUMAN (Q13464) Rho-associated protein kinase 1 (EC 2.7.11.1)|
           (Rho-associated, coiled-coil-containing protein kinase
           1) (p160 ROCK-1) (p160ROCK) (NY-REN-35 antigen)
          Length = 1354

 Score = 28.5 bits (62), Expect = 7.7
 Identities = 13/33 (39%), Positives = 23/33 (69%)
 Frame = +3

Query: 228 KYFSTTKKGEIPELKEELNSQYKDKRKDAVKKV 326
           +YFST  K ++ ELKEE+    ++K ++ +KK+
Sbjct: 850 QYFSTLYKTQVKELKEEI----EEKNRENLKKI 878

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>LEA2_CICAR (O49817) Late embryogenesis abundant protein 2 (CapLEA-2)|
          Length = 155

 Score = 28.5 bits (62), Expect = 7.7
 Identities = 15/51 (29%), Positives = 23/51 (45%)
 Frame = +3

Query: 210 MSGHDSKYFSTTKKGEIPELKEELNSQYKDKRKDAVKKVIAAMTVGKDVSS 362
           M+ HD  Y +   KG   E   ++    +DK + A +K   A    KD +S
Sbjct: 1   MTSHDQSYRAGEAKGRTEEKTNQMIGNIEDKAQAAKEKAQQAAQTAKDKTS 51

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>MLL3_HUMAN (Q8NEZ4) Myeloid/lymphoid or mixed-lineage leukemia protein 3 homolog|
            (Histone-lysine N-methyltransferase, H3 lysine-4 specific
            MLL3) (EC 2.1.1.43) (Homologous to ALR protein)
          Length = 4911

 Score = 28.5 bits (62), Expect = 7.7
 Identities = 15/39 (38%), Positives = 18/39 (46%), Gaps = 2/39 (5%)
 Frame = -1

Query: 217  PLISPRRAYLPNTHRSP--PPAAEPGVRDGGLRYARGGG 107
            P + PR A  P   R P  P  A  G+R  G R+   GG
Sbjct: 2449 PPLGPRYAVFPKDQRGPYPPDVASMGMRPHGFRFGFPGG 2487

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>DPOLA_ORYSA (O48653) DNA polymerase alpha catalytic subunit (EC 2.7.7.7)|
          Length = 1534

 Score = 28.5 bits (62), Expect = 7.7
 Identities = 14/46 (30%), Positives = 23/46 (50%)
 Frame = -1

Query: 250 FLVVEKYLESCPLISPRRAYLPNTHRSPPPAAEPGVRDGGLRYARG 113
           F+V +K+  S    S +R   P+T  + P  A+P + D G    +G
Sbjct: 852 FIVPDKFARSKEFNSTKRKMNPDTEAARPDEADPSIDDEGHHVDQG 897

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>ATRIP_DROME (Q9VVN4) ATR-interacting protein mus304 (Mutagen-sensivite protein|
           304)
          Length = 846

 Score = 28.5 bits (62), Expect = 7.7
 Identities = 15/64 (23%), Positives = 31/64 (48%)
 Frame = +3

Query: 222 DSKYFSTTKKGEIPELKEELNSQYKDKRKDAVKKVIAAMTVGKDVSSLFTDVVNCMQTEN 401
           DSK  +  K GE+  L++EL    +  +   ++K+  A    +D +    +    +  ++
Sbjct: 201 DSKERNEIKSGEVSLLRDELKHLRQQLQASKMEKLALADETNRDCNKKVAEAAKQIAAKD 260

Query: 402 LELK 413
           +ELK
Sbjct: 261 IELK 264

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>ROCK1_BOVIN (Q8MIT6) Rho-associated protein kinase 1 (EC 2.7.11.1)|
           (Rho-associated, coiled-coil-containing protein kinase
           1) (p160 ROCK-1) (p160ROCK) (Fragment)
          Length = 441

 Score = 28.5 bits (62), Expect = 7.7
 Identities = 13/33 (39%), Positives = 23/33 (69%)
 Frame = +3

Query: 228 KYFSTTKKGEIPELKEELNSQYKDKRKDAVKKV 326
           +YFST  K ++ ELKEE+    ++K ++ +KK+
Sbjct: 257 QYFSTLYKTQVKELKEEI----EEKNRENLKKI 285

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>NOLA1_HUMAN (Q9NY12) H/ACA ribonucleoprotein complex subunit 1 (Nucleolar|
           protein family A member 1) (snoRNP protein GAR1)
          Length = 217

 Score = 28.5 bits (62), Expect = 7.7
 Identities = 19/48 (39%), Positives = 20/48 (41%)
 Frame = -1

Query: 190 LPNTHRSPPPAAEPGVRDGGLRYARGGGRPACLRDGMGLDSARGSQAG 47
           LP     P P  E G   GG R  RGGGR    R G      RG + G
Sbjct: 152 LPLQRFLPRPPGEKGPPRGGGRGGRGGGRGGGGRGGGRGGGFRGGRGG 199

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>NELFA_HUMAN (Q9H3P2) Negative elongation factor A (NELF-A) (Wolf-Hirschhorn|
           syndrome candidate 2 protein)
          Length = 549

 Score = 28.5 bits (62), Expect = 7.7
 Identities = 12/38 (31%), Positives = 19/38 (50%)
 Frame = -1

Query: 253 PFLVVEKYLESCPLISPRRAYLPNTHRSPPPAAEPGVR 140
           P L    YL S P + P  +Y+P++   P P++    R
Sbjct: 338 PALPSTSYLPSTPSVVPASSYIPSSETPPAPSSREASR 375


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 55,359,538
Number of Sequences: 219361
Number of extensions: 1055041
Number of successful extensions: 4265
Number of sequences better than 10.0: 40
Number of HSP's better than 10.0 without gapping: 4001
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4261
length of database: 80,573,946
effective HSP length: 101
effective length of database: 58,418,485
effective search space used: 2628831825
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)

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full-length cDNA and EST

Clone Information

BLAST Search Result