ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name bastl31g01
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1IF41_WHEAT (Q03387) Eukaryotic initiation factor iso-4F subunit ... 34 0.087
2PDE2A_HUMAN (O00408) cGMP-dependent 3',5'-cyclic phosphodiestera... 30 1.3
3STK6_XENLA (Q91820) Serine/threonine-protein kinase Eg2 (EC 2.7.... 29 2.8
4PTN12_HUMAN (Q05209) Tyrosine-protein phosphatase non-receptor t... 28 4.8
5GMIP_MOUSE (Q6PGG2) GEM-interacting protein (GMIP) 28 6.2
6PRP28_ASPOR (Q2UH00) Pre-mRNA splicing ATP-dependent RNA helicas... 25 7.6
7MK07_HUMAN (Q13164) Mitogen-activated protein kinase 7 (EC 2.7.1... 28 8.1
8STK6L_XENLA (Q91819) Serine/threonine-protein kinase Eg2-like (E... 28 8.1
9SPR2F_MOUSE (O70557) Small proline-rich protein 2F 28 8.1

>IF41_WHEAT (Q03387) Eukaryotic initiation factor iso-4F subunit p82-34|
           (eIF-(iso)4F p82-34)
          Length = 788

 Score = 34.3 bits (77), Expect = 0.087
 Identities = 19/32 (59%), Positives = 19/32 (59%)
 Frame = +1

Query: 157 MTTDQPVISLXXXXXXXXXXXXXLFAPAFAVA 252
           MTTDQPVISL             LFAPAFAVA
Sbjct: 1   MTTDQPVISLRPGGGGGGPRGGRLFAPAFAVA 32



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>PDE2A_HUMAN (O00408) cGMP-dependent 3',5'-cyclic phosphodiesterase (EC|
           3.1.4.17) (Cyclic GMP-stimulated phosphodiesterase)
           (CGS-PDE) (cGSPDE)
          Length = 941

 Score = 30.4 bits (67), Expect = 1.3
 Identities = 17/47 (36%), Positives = 25/47 (53%)
 Frame = +3

Query: 12  RSQTEPNPPPREEGKKKLGFLRDFPPGAPPIPCRSSCRGALVGFGTL 152
           RSQ  P   P E   +++ FL+   P  PP PC  S + AL+  G++
Sbjct: 12  RSQQYPAARPAEPRGQQV-FLKPDEPPPPPQPCADSLQDALLSLGSV 57



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>STK6_XENLA (Q91820) Serine/threonine-protein kinase Eg2 (EC 2.7.11.1) (pEg2)|
           (p46Eg265)
          Length = 407

 Score = 29.3 bits (64), Expect = 2.8
 Identities = 14/31 (45%), Positives = 17/31 (54%)
 Frame = +3

Query: 6   GERSQTEPNPPPREEGKKKLGFLRDFPPGAP 98
           G   Q + +  P+EEGKKK   L DF  G P
Sbjct: 115 GSTDQGKTSAVPKEEGKKKQWCLEDFEIGRP 145



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>PTN12_HUMAN (Q05209) Tyrosine-protein phosphatase non-receptor type 12 (EC|
           3.1.3.48) (Protein-tyrosine phosphatase G1) (PTPG1)
          Length = 780

 Score = 28.5 bits (62), Expect = 4.8
 Identities = 11/23 (47%), Positives = 13/23 (56%)
 Frame = +1

Query: 82  SPPAPRRFPVDRAAAVPWSGSGP 150
           +PP P R P+D    V WS  GP
Sbjct: 519 TPPRPDRLPLDEKGHVTWSFHGP 541



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>GMIP_MOUSE (Q6PGG2) GEM-interacting protein (GMIP)|
          Length = 971

 Score = 28.1 bits (61), Expect = 6.2
 Identities = 12/28 (42%), Positives = 16/28 (57%)
 Frame = +3

Query: 39  PREEGKKKLGFLRDFPPGAPPIPCRSSC 122
           P E G++   F+R   PGAPP P  + C
Sbjct: 342 PFEPGQRYQEFVRTLQPGAPPPPSPAFC 369



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>PRP28_ASPOR (Q2UH00) Pre-mRNA splicing ATP-dependent RNA helicase prp28 (EC|
           3.6.1.-)
          Length = 803

 Score = 25.0 bits (53), Expect(2) = 7.6
 Identities = 11/24 (45%), Positives = 13/24 (54%)
 Frame = +3

Query: 27  PNPPPREEGKKKLGFLRDFPPGAP 98
           P PPP E  KKK+G+    P   P
Sbjct: 57  PAPPPPEPKKKKVGWGAKKPAATP 80



 Score = 21.2 bits (43), Expect(2) = 7.6
 Identities = 8/13 (61%), Positives = 8/13 (61%)
 Frame = +3

Query: 9  ERSQTEPNPPPRE 47
          ER  T P PPP E
Sbjct: 23 ERPPTPPPPPPEE 35



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>MK07_HUMAN (Q13164) Mitogen-activated protein kinase 7 (EC 2.7.11.24)|
           (Extracellular signal-regulated kinase 5) (ERK-5) (ERK4)
           (BMK1 kinase)
          Length = 815

 Score = 27.7 bits (60), Expect = 8.1
 Identities = 12/23 (52%), Positives = 12/23 (52%)
 Frame = +3

Query: 33  PPPREEGKKKLGFLRDFPPGAPP 101
           PPP   G    G L  FPPG PP
Sbjct: 670 PPPGLPGSSTPGVLPYFPPGLPP 692



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>STK6L_XENLA (Q91819) Serine/threonine-protein kinase Eg2-like (EC 2.7.11.1)|
           (p46XlEg22)
          Length = 408

 Score = 27.7 bits (60), Expect = 8.1
 Identities = 14/31 (45%), Positives = 16/31 (51%)
 Frame = +3

Query: 6   GERSQTEPNPPPREEGKKKLGFLRDFPPGAP 98
           G   Q +    P+EEGKKK   L DF  G P
Sbjct: 115 GSTDQGKTLAVPKEEGKKKQWCLEDFEIGRP 145



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>SPR2F_MOUSE (O70557) Small proline-rich protein 2F|
          Length = 76

 Score = 27.7 bits (60), Expect = 8.1
 Identities = 13/33 (39%), Positives = 15/33 (45%)
 Frame = +3

Query: 24  EPNPPPREEGKKKLGFLRDFPPGAPPIPCRSSC 122
           EP PPP         F +  PP  PP PC+  C
Sbjct: 47  EPCPPP--------SFQQKCPPVQPPPPCQQKC 71


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 28,215,997
Number of Sequences: 219361
Number of extensions: 485747
Number of successful extensions: 1931
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 1775
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1927
length of database: 80,573,946
effective HSP length: 60
effective length of database: 67,412,286
effective search space used: 1617894864
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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