Clone Name | bastl31g01 |
---|---|
Clone Library Name | barley_pub |
No. | Definition | Score (bits) |
E Value |
1 | gb|M95746.1|WHTSTPCDN Wheat (clone p80k-16) initiation factor is... | 167 | 2e-38 | 2 | gb|M95747.1|WHTIF4F82B Wheat (clone p80k-34) initiation factor i... | 167 | 2e-38 | 3 | gb|AC103849.3| Homo sapiens chromosome 8, clone RP11-75H14, comp... | 40 | 3.3 | 4 | gb|AC107952.5| Homo sapiens chromosome 8, clone RP11-140I16, com... | 40 | 3.3 | 5 | gb|CP000085.1| Burkholderia thailandensis E264 chromosome II, co... | 40 | 3.3 |
---|
>gb|M95746.1|WHTSTPCDN Wheat (clone p80k-16) initiation factor isozyme 4F p82 subunit mRNA sequence Length = 2863 Score = 167 bits (84), Expect = 2e-38 Identities = 93/96 (96%) Strand = Plus / Plus Query: 95 cccgccgattccctgtcgatcgagctgccgcggtgccttggtcgggttcgggaccctcag 154 ||||||||||||||||||||||||||| ||||||||||||||||| ||||| |||||||| Sbjct: 22 cccgccgattccctgtcgatcgagctgtcgcggtgccttggtcggattcggcaccctcag 81 Query: 155 ccatgacgacagaccagccagtgatcagcctgcgcc 190 |||||||||||||||||||||||||||||||||||| Sbjct: 82 ccatgacgacagaccagccagtgatcagcctgcgcc 117 Score = 46.1 bits (23), Expect = 0.053 Identities = 29/31 (93%) Strand = Plus / Plus Query: 223 cgcctctttgcccccgccttcgccgtcgccg 253 |||||||| |||||||||||||| ||||||| Sbjct: 150 cgcctcttcgcccccgccttcgcggtcgccg 180
>gb|M95747.1|WHTIF4F82B Wheat (clone p80k-34) initiation factor isozyme 4F p82 subunit mRNA, complete cds Length = 2887 Score = 167 bits (84), Expect = 2e-38 Identities = 93/96 (96%) Strand = Plus / Plus Query: 95 cccgccgattccctgtcgatcgagctgccgcggtgccttggtcgggttcgggaccctcag 154 ||||||||||||||||||||||||||| ||||||||||||||||| ||||| |||||||| Sbjct: 22 cccgccgattccctgtcgatcgagctgtcgcggtgccttggtcggattcggcaccctcag 81 Query: 155 ccatgacgacagaccagccagtgatcagcctgcgcc 190 |||||||||||||||||||||||||||||||||||| Sbjct: 82 ccatgacgacagaccagccagtgatcagcctgcgcc 117 Score = 46.1 bits (23), Expect = 0.053 Identities = 29/31 (93%) Strand = Plus / Plus Query: 223 cgcctctttgcccccgccttcgccgtcgccg 253 |||||||| |||||||||||||| ||||||| Sbjct: 150 cgcctcttcgcccccgccttcgcggtcgccg 180
>gb|AC103849.3| Homo sapiens chromosome 8, clone RP11-75H14, complete sequence Length = 147107 Score = 40.1 bits (20), Expect = 3.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 162 gacagaccagccagtgatca 181 |||||||||||||||||||| Sbjct: 15395 gacagaccagccagtgatca 15376
>gb|AC107952.5| Homo sapiens chromosome 8, clone RP11-140I16, complete sequence Length = 142102 Score = 40.1 bits (20), Expect = 3.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 162 gacagaccagccagtgatca 181 |||||||||||||||||||| Sbjct: 106152 gacagaccagccagtgatca 106133
>gb|CP000085.1| Burkholderia thailandensis E264 chromosome II, complete sequence Length = 2914771 Score = 40.1 bits (20), Expect = 3.3 Identities = 23/24 (95%) Strand = Plus / Plus Query: 230 ttgcccccgccttcgccgtcgccg 253 |||||| ||||||||||||||||| Sbjct: 1991866 ttgccctcgccttcgccgtcgccg 1991889 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 1,149,783 Number of Sequences: 3902068 Number of extensions: 1149783 Number of successful extensions: 20662 Number of sequences better than 10.0: 5 Number of HSP's better than 10.0 without gapping: 5 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 20635 Number of HSP's gapped (non-prelim): 27 length of query: 255 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 233 effective length of database: 17,147,199,772 effective search space: 3995297546876 effective search space used: 3995297546876 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)