ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bastl31f12 |
|---|---|
| Clone Library Name | barley_pub |
>YLPM1_MOUSE (Q9R0I7) YLP motif-containing protein 1 (Nuclear protein ZAP3)| Length = 1386 Score = 31.6 bits (70), Expect = 0.57 Identities = 16/35 (45%), Positives = 19/35 (54%) Frame = +1 Query: 121 IESRPRLPSPPRHAAIPRVPAGEFLHWSPPLPHPP 225 I S P LP PP H++IP P G PP+ PP Sbjct: 844 IPSAPVLPPPPVHSSIP--PPGPMPMGMPPMSKPP 876
>CIKS_HUMAN (O43734) Adapter protein CIKS (Connection to IKK and SAPK/JNK)| (TRAF3-interacting protein 2) (Nuclear factor NF-kappa-B activator 1) (ACT1) Length = 574 Score = 31.6 bits (70), Expect = 0.57 Identities = 12/22 (54%), Positives = 16/22 (72%) Frame = +1 Query: 118 PIESRPRLPSPPRHAAIPRVPA 183 P E RP++P PP AA+PR P+ Sbjct: 371 PAELRPQVPQPPSPAAVPRPPS 392
>YLPM1_HUMAN (P49750) YLP motif-containing protein 1 (Nuclear protein ZAP3)| (ZAP113) Length = 1951 Score = 31.2 bits (69), Expect = 0.74 Identities = 16/35 (45%), Positives = 19/35 (54%) Frame = +1 Query: 121 IESRPRLPSPPRHAAIPRVPAGEFLHWSPPLPHPP 225 I S P LP PP H++IP P G PP+ PP Sbjct: 1407 IPSAPVLPPPPVHSSIP--PPGPVPMGMPPMSKPP 1439
>VINEX_HUMAN (O60504) Vinexin (Sorbin and SH3 domain-containing protein 3)| (SH3-containing adapter molecule 1) (SCAM-1) Length = 671 Score = 30.8 bits (68), Expect = 0.97 Identities = 17/35 (48%), Positives = 17/35 (48%), Gaps = 5/35 (14%) Frame = +1 Query: 136 RLPSP-----PRHAAIPRVPAGEFLHWSPPLPHPP 225 RLPSP PR A R PAG WS PH P Sbjct: 296 RLPSPKSSPAPRRAPEQRPPAGPASAWSSSYPHAP 330
>CSF3R_HUMAN (Q99062) Granulocyte colony-stimulating factor receptor precursor| (G-CSF-R) (CD114 antigen) Length = 836 Score = 29.6 bits (65), Expect = 2.2 Identities = 16/43 (37%), Positives = 23/43 (53%), Gaps = 1/43 (2%) Frame = +1 Query: 109 RPWPIE-SRPRLPSPPRHAAIPRVPAGEFLHWSPPLPHPPGFL 234 RP P+ S R P+ R A+ R P ++ W PP P P G++ Sbjct: 418 RPTPVVFSESRGPALTRLHAMARDPHSLWVGWEPPNPWPQGYV 460
>FUBP2_HUMAN (Q92945) Far upstream element-binding protein 2 (FUSE-binding| protein 2) (KH type splicing regulatory protein) (KSRP) (p75) Length = 707 Score = 29.3 bits (64), Expect = 2.8 Identities = 12/36 (33%), Positives = 15/36 (41%) Frame = +1 Query: 118 PIESRPRLPSPPRHAAIPRVPAGEFLHWSPPLPHPP 225 P + P PP H P+ + W PP PH P Sbjct: 525 PPGAPPHAGGPPPHQYPPQGWGNTYPQWQPPAPHDP 560
>FUBP2_RAT (Q99PF5) Far upstream element-binding protein 2 (FUSE-binding| protein 2) (KH type splicing regulatory protein) (KSRP) (MAP2 RNA trans-acting protein 1) (MARTA1) Length = 721 Score = 29.3 bits (64), Expect = 2.8 Identities = 12/36 (33%), Positives = 15/36 (41%) Frame = +1 Query: 118 PIESRPRLPSPPRHAAIPRVPAGEFLHWSPPLPHPP 225 P + P PP H P+ + W PP PH P Sbjct: 528 PPGAPPHAGGPPPHQYPPQGWGNTYPEWQPPAPHDP 563
>HHEX_CHICK (Q05502) Homeobox protein PRH (Hematopoietically expressed| homeobox) Length = 277 Score = 28.9 bits (63), Expect = 3.7 Identities = 16/42 (38%), Positives = 21/42 (50%) Frame = +1 Query: 118 PIESRPRLPSPPRHAAIPRVPAGEFLHWSPPLPHPPGFLRGG 243 P+ S PR HA I + P G+ L WSP + P +GG Sbjct: 106 PLYSFPRAVGDYTHALIRQDPLGKPLLWSPFIQRPLHKRKGG 147
>DOT1L_HUMAN (Q8TEK3) Histone-lysine N-methyltransferase, H3 lysine-79 specific| (EC 2.1.1.43) (Histone H3-K79 methyltransferase) (H3-K79-HMTase) (DOT1-like protein) Length = 1739 Score = 28.9 bits (63), Expect = 3.7 Identities = 21/52 (40%), Positives = 24/52 (46%), Gaps = 11/52 (21%) Frame = +1 Query: 112 PWPIESRPRLPSPPRHAAIP------RVPAG-EFLHWSPP----LPHPPGFL 234 P +E+RP P PP +P R PAG LH PP LP PP L Sbjct: 1585 PASVETRPPPPPPPPPPPLPPPAHLGRSPAGPPVLHAPPPPNAALPPPPTLL 1636
>BCTN7_SHEEP (P50415) Bactenecin-7 precursor (Bac7) (Cathelicidin-3) (PR-59)| Length = 190 Score = 28.9 bits (63), Expect = 3.7 Identities = 17/43 (39%), Positives = 20/43 (46%), Gaps = 12/43 (27%) Frame = +1 Query: 130 RPRLPSP-----PRHAAIP-------RVPAGEFLHWSPPLPHP 222 RPRLP P PR ++P R+P L W PP P P Sbjct: 137 RPRLPRPRPRPRPRPRSLPLPRPQPRRIPRPILLPWRPPRPIP 179
>AMEL_ORNAN (O97646) Amelogenin (Fragment)| Length = 121 Score = 28.9 bits (63), Expect = 3.7 Identities = 14/33 (42%), Positives = 19/33 (57%), Gaps = 1/33 (3%) Frame = +1 Query: 130 RPRLPSPPRHAAI-PRVPAGEFLHWSPPLPHPP 225 +P++P P H I P+ PA H PP+P PP Sbjct: 68 QPQVPQQPPHQPIQPQAPA----HPMPPMPQPP 96
>PDCD7_HUMAN (Q8N8D1) Programmed cell death protein 7 (ES18) (HES18)| Length = 485 Score = 28.9 bits (63), Expect = 3.7 Identities = 14/37 (37%), Positives = 17/37 (45%) Frame = +1 Query: 115 WPIESRPRLPSPPRHAAIPRVPAGEFLHWSPPLPHPP 225 +P+ P P PP+ P AGE PP P PP Sbjct: 81 YPVPPPPLPPPPPQCRPFPGTDAGERPRPPPPGPGPP 117
>HME1_MOUSE (P09065) Homeobox protein engrailed-1 (Mo-En-1)| Length = 401 Score = 28.5 bits (62), Expect = 4.8 Identities = 13/36 (36%), Positives = 17/36 (47%) Frame = +1 Query: 118 PIESRPRLPSPPRHAAIPRVPAGEFLHWSPPLPHPP 225 P+ +P PSPP +P + L PP P PP Sbjct: 47 PVSPQPAPPSPPAAPCLPPLAHHPHLPPHPPPPPPP 82
>NCOR2_HUMAN (Q9Y618) Nuclear receptor corepressor 2 (N-CoR2) (Silencing mediator| of retinoic acid and thyroid hormone receptor) (SMRT) (SMRTe) (Thyroid-, retinoic-acid-receptor-associated corepressor) (T3 receptor-associating factor) (TRAC) (CTG repeat p Length = 2517 Score = 28.5 bits (62), Expect = 4.8 Identities = 16/36 (44%), Positives = 17/36 (47%), Gaps = 2/36 (5%) Frame = +1 Query: 124 ESRPRLPSPPRHAAIPRVPAGEFL--HWSPPLPHPP 225 E RP +P HA I R PA H SP P PP Sbjct: 1980 EPRPLVPPVSGHATIARTPAKNLAPHHASPDPPAPP 2015
>YRR2_CAEEL (Q09345) Hypothetical protein R144.2| Length = 823 Score = 28.5 bits (62), Expect = 4.8 Identities = 18/60 (30%), Positives = 24/60 (40%) Frame = +1 Query: 43 AQDKNXXXXXXXXXXXXXXTSLRPWPIESRPRLPSPPRHAAIPRVPAGEFLHWSPPLPHP 222 AQD++ + P RP +P PP + P VPA L +PP HP Sbjct: 290 AQDQDFRPKTLKPTSVIGSHAFAPVAAPIRPMIPVPPPVSVAPFVPAPP-LSSAPPFQHP 348
>APP1_SCHPO (Q9P7E8) Protein app1| Length = 857 Score = 28.5 bits (62), Expect = 4.8 Identities = 11/35 (31%), Positives = 18/35 (51%) Frame = +1 Query: 121 IESRPRLPSPPRHAAIPRVPAGEFLHWSPPLPHPP 225 + RP +P P ++P+ PA + P +P PP Sbjct: 649 VPQRPAVPVVPEAPSVPQPPAAPVVPEVPSVPQPP 683
>RM49_PONPY (Q5R8X0) Mitochondrial 39S ribosomal protein L49 (L49mt) (MRP-L49)| Length = 166 Score = 28.5 bits (62), Expect = 4.8 Identities = 13/30 (43%), Positives = 16/30 (53%) Frame = +1 Query: 136 RLPSPPRHAAIPRVPAGEFLHWSPPLPHPP 225 R+P PP+H P P+G W PP PP Sbjct: 56 RIPDPPKHEHYP-TPSG----WQPPRDPPP 80
>RM49_MACFA (Q4R5K7) Mitochondrial 39S ribosomal protein L49 (L49mt) (MRP-L49)| Length = 166 Score = 28.5 bits (62), Expect = 4.8 Identities = 13/30 (43%), Positives = 16/30 (53%) Frame = +1 Query: 136 RLPSPPRHAAIPRVPAGEFLHWSPPLPHPP 225 R+P PP+H P P+G W PP PP Sbjct: 56 RIPDPPKHEHYP-TPSG----WQPPRDPPP 80
>RM49_HUMAN (Q13405) Mitochondrial 39S ribosomal protein L49 (L49mt) (MRP-L49)| (Protein NOF1) (Neighbor of FAU) (NOF) Length = 166 Score = 28.5 bits (62), Expect = 4.8 Identities = 13/30 (43%), Positives = 16/30 (53%) Frame = +1 Query: 136 RLPSPPRHAAIPRVPAGEFLHWSPPLPHPP 225 R+P PP+H P P+G W PP PP Sbjct: 56 RIPDPPKHEHYP-TPSG----WQPPRDPPP 80
>SF3A1_MOUSE (Q8K4Z5) Splicing factor 3 subunit 1 (SF3a120)| Length = 791 Score = 27.7 bits (60), Expect = 8.2 Identities = 13/40 (32%), Positives = 22/40 (55%) Frame = +1 Query: 106 LRPWPIESRPRLPSPPRHAAIPRVPAGEFLHWSPPLPHPP 225 +R + + P +P PP A++ R+P G + PP+ H P Sbjct: 584 VRTTVVSAVPVMPRPPM-ASVVRLPPGSVIAPMPPIIHAP 622
>RBM12_MACMU (Q8SQ27) RNA-binding protein 12 (RNA-binding motif protein 12)| (SH3/WW domain anchor protein in the nucleus) (SWAN) Length = 932 Score = 27.7 bits (60), Expect = 8.2 Identities = 14/38 (36%), Positives = 19/38 (50%) Frame = +1 Query: 112 PWPIESRPRLPSPPRHAAIPRVPAGEFLHWSPPLPHPP 225 P PI P +PS P +IP +P + PP+P P Sbjct: 187 PPPIPPIPAMPSLPPMPSIPPIPVPPPVPTLPPVPPVP 224
>RBM12_HUMAN (Q9NTZ6) RNA-binding protein 12 (RNA-binding motif protein 12)| (SH3/WW domain anchor protein in the nucleus) (SWAN) Length = 932 Score = 27.7 bits (60), Expect = 8.2 Identities = 14/38 (36%), Positives = 19/38 (50%) Frame = +1 Query: 112 PWPIESRPRLPSPPRHAAIPRVPAGEFLHWSPPLPHPP 225 P PI P +PS P +IP +P + PP+P P Sbjct: 187 PPPIPPIPAMPSLPPMPSIPPIPVPPPVPTLPPVPPVP 224
>ZBP2_CHICK (Q8UVD9) Zipcode-binding protein 2| Length = 769 Score = 27.7 bits (60), Expect = 8.2 Identities = 13/38 (34%), Positives = 15/38 (39%) Frame = +1 Query: 112 PWPIESRPRLPSPPRHAAIPRVPAGEFLHWSPPLPHPP 225 P P P PP H P+ + W PP PH P Sbjct: 585 PGPFNQGPP-GGPPPHQYPPQGWGNTYPQWQPPAPHDP 621
>SF3A1_HUMAN (Q15459) Splicing factor 3 subunit 1 (Spliceosome-associated| protein 114) (SAP 114) (SF3a120) Length = 793 Score = 27.7 bits (60), Expect = 8.2 Identities = 13/40 (32%), Positives = 22/40 (55%) Frame = +1 Query: 106 LRPWPIESRPRLPSPPRHAAIPRVPAGEFLHWSPPLPHPP 225 +R + + P +P PP A++ R+P G + PP+ H P Sbjct: 586 VRTTVVSAVPVMPRPPM-ASVVRLPPGSVIAPMPPIIHAP 624
>PKWA_THECU (P49695) Probable serine/threonine-protein kinase pkwA (EC| 2.7.11.1) Length = 742 Score = 27.7 bits (60), Expect = 8.2 Identities = 18/41 (43%), Positives = 19/41 (46%), Gaps = 2/41 (4%) Frame = +1 Query: 109 RPWPIESRPRLPSPPRHAAIPRVP--AGEFLHWSPPLPHPP 225 RP P RPR P R A P+ P A WSPP PP Sbjct: 356 RPAPTPPRPR--EPARGAIKPKNPRPAAPQPPWSPPRVQPP 394
>TRX2_MOUSE (O08550) Trithorax homolog 2 (WW domain-binding protein 7)| (Fragment) Length = 290 Score = 27.7 bits (60), Expect = 8.2 Identities = 15/46 (32%), Positives = 22/46 (47%), Gaps = 8/46 (17%) Frame = +1 Query: 112 PWPIESRPRLPSPP--------RHAAIPRVPAGEFLHWSPPLPHPP 225 P P+ S PR+P+PP + +I R P + + LP PP Sbjct: 211 PVPVSSPPRVPTPPSTPVPLPEKRRSILREPTFRWTSLTRELPPPP 256
>EVX2_HUMAN (Q03828) Homeobox even-skipped homolog protein 2 (EVX-2)| Length = 476 Score = 27.7 bits (60), Expect = 8.2 Identities = 13/26 (50%), Positives = 17/26 (65%), Gaps = 1/26 (3%) Frame = +1 Query: 118 PIESRPRLPSPPRHAAIPRVPA-GEF 192 P PRLPS P H+A+ +PA G+F Sbjct: 46 PARLSPRLPSAPLHSALGELPAKGKF 71
>ELL2_HUMAN (O00472) RNA polymerase II elongation factor ELL2| Length = 640 Score = 27.7 bits (60), Expect = 8.2 Identities = 17/47 (36%), Positives = 21/47 (44%) Frame = +1 Query: 106 LRPWPIESRPRLPSPPRHAAIPRVPAGEFLHWSPPLPHPPGFLRGGS 246 L P +S LP PP AAIP P + P+ HPP + S Sbjct: 352 LNPTSEKSAAGLPLPPAAAAIPTPPPLPSTYL--PISHPPQIVNSNS 396
>DIAP3_HUMAN (Q9NSV4) Protein diaphanous homolog 3 (Diaphanous-related formin-3)| (DRF3) Length = 1110 Score = 27.7 bits (60), Expect = 8.2 Identities = 18/45 (40%), Positives = 24/45 (53%), Gaps = 2/45 (4%) Frame = +1 Query: 112 PWPIESRPRLPSPPRHAAIPRVPAGEFLHWSPPLPHPP--GFLRG 240 P P+ S +P PP P +P G + +S P+P PP GFL G Sbjct: 578 PPPLPSGGGVPPPPPPPPPPPLP-GMRMPFSGPVPPPPPLGFLGG 621
>BAG_STRAG (P27951) IgA FC receptor precursor (Beta antigen) (B antigen)| Length = 1164 Score = 27.7 bits (60), Expect = 8.2 Identities = 11/31 (35%), Positives = 15/31 (48%) Frame = +1 Query: 133 PRLPSPPRHAAIPRVPAGEFLHWSPPLPHPP 225 PR+P P+ P VP +P +P PP Sbjct: 887 PRVPESPKTPEAPHVPESPKTPEAPKIPEPP 917 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.317 0.138 0.467 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 28,599,377 Number of Sequences: 219361 Number of extensions: 411568 Number of successful extensions: 2029 Number of sequences better than 10.0: 30 Number of HSP's better than 10.0 without gapping: 1703 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 2005 length of database: 80,573,946 effective HSP length: 57 effective length of database: 68,070,369 effective search space used: 1633688856 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.6 bits)
